RNA–Protein interactions for RNA: ENST00000566292.5

USB1-213, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 575 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-213ENST00000566292 QRICH2Q9H0J4 1663 aa26.47■■□□□ 1.83
USB1-213ENST00000566292 TRPM1Q7Z4N2 1603 aa26.47■■□□□ 1.83
USB1-213ENST00000566292 VPS72Q15906 364 aa26.47■■□□□ 1.83
USB1-213ENST00000566292 COL14A1Q05707 1796 aaKnown RBP26.47■■□□□ 1.83
USB1-213ENST00000566292 PAK3O75914 559 aaPredicted RBP26.46■■□□□ 1.83
USB1-213ENST00000566292 POLR3AO14802 1390 aaPredicted RBP26.45■■□□□ 1.82
USB1-213ENST00000566292 PHRF1Q9P1Y6 1649 aaKnown RBP26.44■■□□□ 1.82
USB1-213ENST00000566292 CENPJQ9HC77 1338 aaPredicted RBP26.43■■□□□ 1.82
USB1-213ENST00000566292 CCDC61Q9Y6R9 512 aa26.43■■□□□ 1.82
USB1-213ENST00000566292 ACEP12821 1306 aa26.41■■□□□ 1.82
USB1-213ENST00000566292 PLEKHG3A1L390 1219 aa26.4■■□□□ 1.82
USB1-213ENST00000566292 NEUROD1Q13562 356 aa26.4■■□□□ 1.82
USB1-213ENST00000566292 BTG4Q9NY30 223 aa26.4■■□□□ 1.82
USB1-213ENST00000566292 CCDC9Q9Y3X0 531 aaKnown RBP26.4■■□□□ 1.82
USB1-213ENST00000566292 NBPF8Q3BBV2 869 aa26.39■■□□□ 1.82
USB1-213ENST00000566292 SEPT12Q8IYM1 358 aa26.38■■□□□ 1.81
USB1-213ENST00000566292 ONECUT3O60422 494 aaPredicted RBP26.37■■□□□ 1.81
USB1-213ENST00000566292 SRPK2P78362 688 aaKnown RBP26.36■■□□□ 1.81
USB1-213ENST00000566292 CABP2Q9NPB3 220 aa26.36■■□□□ 1.81
USB1-213ENST00000566292 PPIP5K1Q6PFW1 1433 aa26.36■■□□□ 1.81
USB1-213ENST00000566292 NUTM2GQ5VZR2 741 aa26.35■■□□□ 1.81
USB1-213ENST00000566292 CCDC125Q86Z20 511 aa26.33■■□□□ 1.81
USB1-213ENST00000566292 PRDM11Q9NQV5 511 aa26.33■■□□□ 1.81
USB1-213ENST00000566292 KIAA0232Q92628 1395 aa26.33■■□□□ 1.8
USB1-213ENST00000566292 NRKQ7Z2Y5 1582 aa26.32■■□□□ 1.8
USB1-213ENST00000566292 ROCK2O75116 1388 aaKnown RBP26.31■■□□□ 1.8
USB1-213ENST00000566292 CHRNA2Q15822 529 aa26.29■■□□□ 1.8
USB1-213ENST00000566292 FAM98CQ17RN3 349 aaKnown RBP26.29■■□□□ 1.8
USB1-213ENST00000566292 ZC3H6P61129 1189 aaKnown RBP26.28■■□□□ 1.8
USB1-213ENST00000566292 ABTB2Q8N961 1025 aa26.28■■□□□ 1.8
USB1-213ENST00000566292 SPATA31A5Q5VU36 1347 aa26.28■■□□□ 1.8
USB1-213ENST00000566292 SPATA31A7Q8IWB4 1347 aa26.28■■□□□ 1.8
USB1-213ENST00000566292 BLMP54132 1417 aaPredicted RBP26.28■■□□□ 1.8
USB1-213ENST00000566292 KRT27Q7Z3Y8 459 aa26.27■■□□□ 1.8
USB1-213ENST00000566292 THSD7AQ9UPZ6 1657 aa26.27■■□□□ 1.8
USB1-213ENST00000566292 USP19O94966 1318 aa26.26■■□□□ 1.79
USB1-213ENST00000566292 CABP1Q9NZU7 370 aa26.26■■□□□ 1.79
USB1-213ENST00000566292 EVC2Q86UK5 1308 aa26.24■■□□□ 1.79
USB1-213ENST00000566292 A0A0G2JS52 829 aa26.24■■□□□ 1.79
USB1-213ENST00000566292 MYT1Q01538 1121 aa26.24■■□□□ 1.79
USB1-213ENST00000566292 LMO7Q8WWI1 1683 aa26.24■■□□□ 1.79
USB1-213ENST00000566292 USP6P35125 1406 aa26.23■■□□□ 1.79
USB1-213ENST00000566292 BRD4O60885 1362 aaPredicted RBP26.23■■□□□ 1.79
USB1-213ENST00000566292 AKAP12Q02952 1782 aa26.22■■□□□ 1.79
USB1-213ENST00000566292 CAMTA1Q9Y6Y1 1673 aa26.21■■□□□ 1.79
USB1-213ENST00000566292 CPDO75976 1380 aa26.2■■□□□ 1.79
USB1-213ENST00000566292 SPATA31A1Q5TZJ5 1347 aa26.2■■□□□ 1.79
USB1-213ENST00000566292 PIK3C2AO00443 1686 aa26.2■■□□□ 1.78
USB1-213ENST00000566292 NLRP13Q86W25 1043 aa26.2■■□□□ 1.78
USB1-213ENST00000566292 STRN4Q9NRL3 753 aa26.2■■□□□ 1.78
USB1-213ENST00000566292 SSH2Q76I76 1423 aa26.2■■□□□ 1.78
USB1-213ENST00000566292 GCP02774 474 aa26.18■■□□□ 1.78
USB1-213ENST00000566292 DEFB132Q7Z7B7 95 aa26.18■■□□□ 1.78
USB1-213ENST00000566292 SLIT3O75094 1523 aa26.17■■□□□ 1.78
USB1-213ENST00000566292 ZRANB1Q9UGI0 708 aa26.16■■□□□ 1.78
USB1-213ENST00000566292 RGPD1P0DJD0 1748 aa26.14■■□□□ 1.78
USB1-213ENST00000566292 SF3B2Q13435 895 aaKnown RBP26.14■■□□□ 1.78
USB1-213ENST00000566292 FAM182BQ5T319 152 aa26.14■■□□□ 1.78
USB1-213ENST00000566292 TONSLQ96HA7 1378 aa26.14■■□□□ 1.78
USB1-213ENST00000566292 NLRP6P59044 892 aa26.13■■□□□ 1.77
USB1-213ENST00000566292 SBNO2Q9Y2G9 1366 aa26.12■■□□□ 1.77
USB1-213ENST00000566292 EVA1CP58658 441 aa26.12■■□□□ 1.77
USB1-213ENST00000566292 CARD11Q9BXL7 1154 aa26.12■■□□□ 1.77
USB1-213ENST00000566292 TRIM26Q12899 539 aaPredicted RBP26.11■■□□□ 1.77
USB1-213ENST00000566292 LARP1Q6PKG0 1096 aaKnown RBP26.11■■□□□ 1.77
USB1-213ENST00000566292 USP35Q9P2H5 1018 aa26.11■■□□□ 1.77
USB1-213ENST00000566292 MON2Q7Z3U7 1717 aa26.11■■□□□ 1.77
USB1-213ENST00000566292 COL5A2P05997 1499 aaPredicted RBP26.11■■□□□ 1.77
USB1-213ENST00000566292 COL18A1P39060 1754 aa26.1■■□□□ 1.77
USB1-213ENST00000566292 CPSF1Q10570 1443 aaKnown RBP26.1■■□□□ 1.77
USB1-213ENST00000566292 TNS1Q9HBL0 1735 aaKnown RBP26.1■■□□□ 1.77
USB1-213ENST00000566292 ZNF692Q9BU19 519 aaPredicted RBP26.09■■□□□ 1.77
USB1-213ENST00000566292 TTC21BQ7Z4L5 1316 aa26.09■■□□□ 1.77
USB1-213ENST00000566292 BARGINQ6ZT62 677 aa26.08■■□□□ 1.77
USB1-213ENST00000566292 SRCAPQ6ZRS2 3230 aa26.07■■□□□ 1.76
USB1-213ENST00000566292 RGPD5Q99666 1765 aa26.05■■□□□ 1.76
USB1-213ENST00000566292 ZBTB7CA1YPR0 619 aa26.05■■□□□ 1.76
USB1-213ENST00000566292 TCP11L2Q8N4U5 519 aa26.05■■□□□ 1.76
USB1-213ENST00000566292 AATKQ6ZMQ8 1374 aa26.05■■□□□ 1.76
USB1-213ENST00000566292 BAG6P46379 1132 aa26.04■■□□□ 1.76
USB1-213ENST00000566292 KTN1Q86UP2 1357 aaKnown RBP26.04■■□□□ 1.76
USB1-213ENST00000566292 PARP4Q9UKK3 1724 aaKnown RBP26.03■■□□□ 1.76
USB1-213ENST00000566292 TTC21AQ8NDW8 1320 aa26.03■■□□□ 1.76
USB1-213ENST00000566292 CD163L1Q9NR16 1453 aa26.03■■□□□ 1.76
USB1-213ENST00000566292 CRB1P82279 1406 aa26.02■■□□□ 1.76
USB1-213ENST00000566292 THRAP3Q9Y2W1 955 aaKnown RBP26.01■■□□□ 1.75
USB1-213ENST00000566292 USP54Q70EL1 1684 aa26■■□□□ 1.75
USB1-213ENST00000566292 NFAT5O94916 1531 aa26■■□□□ 1.75
USB1-213ENST00000566292 DISP2A7MBM2 1401 aa26■■□□□ 1.75
USB1-213ENST00000566292 WNK3Q9BYP7 1800 aa26■■□□□ 1.75
USB1-213ENST00000566292 EN1Q05925 392 aaPredicted RBP25.99■■□□□ 1.75
USB1-213ENST00000566292 FAM196AQ6ZSG2 479 aa25.99■■□□□ 1.75
USB1-213ENST00000566292 ARHGEF25Q86VW2 580 aa25.98■■□□□ 1.75
USB1-213ENST00000566292 AXIN2Q9Y2T1 843 aa25.98■■□□□ 1.75
USB1-213ENST00000566292 PDE3BQ13370 1112 aa25.97■■□□□ 1.75
USB1-213ENST00000566292 KCNH5Q8NCM2 988 aa25.97■■□□□ 1.75
USB1-213ENST00000566292 SOX12O15370 315 aa25.96■■□□□ 1.75
USB1-213ENST00000566292 TRIM37O94972 964 aa25.96■■□□□ 1.75
USB1-213ENST00000566292 LRRC37A3O60309 1634 aa25.96■■□□□ 1.75
USB1-213ENST00000566292 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms