RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 BTG4Q9NY30 223 aa27.06■■□□□ 1.92
CLN3-218ENST00000565688 CCDC61Q9Y6R9 512 aa27.06■■□□□ 1.92
CLN3-218ENST00000565688 COL14A1Q05707 1796 aaKnown RBP27.06■■□□□ 1.92
CLN3-218ENST00000565688 POLR3AO14802 1390 aaPredicted RBP27.04■■□□□ 1.92
CLN3-218ENST00000565688 BLMP54132 1417 aaPredicted RBP27.03■■□□□ 1.92
CLN3-218ENST00000565688 NRAPQ86VF7 1730 aa27.02■■□□□ 1.92
CLN3-218ENST00000565688 BRWD3Q6RI45 1802 aa27.02■■□□□ 1.92
CLN3-218ENST00000565688 CRYBG1Q9Y4K1 1723 aa27.02■■□□□ 1.92
CLN3-218ENST00000565688 TOPAZ1Q8N9V7 1692 aa27.01■■□□□ 1.92
CLN3-218ENST00000565688 PLEKHG3A1L390 1219 aa27.01■■□□□ 1.91
CLN3-218ENST00000565688 ACEP12821 1306 aa27■■□□□ 1.91
CLN3-218ENST00000565688 CENPJQ9HC77 1338 aaPredicted RBP27■■□□□ 1.91
CLN3-218ENST00000565688 NBPF8Q3BBV2 869 aa27■■□□□ 1.91
CLN3-218ENST00000565688 PRDM11Q9NQV5 511 aa27■■□□□ 1.91
CLN3-218ENST00000565688 ZRANB1Q9UGI0 708 aa27■■□□□ 1.91
CLN3-218ENST00000565688 KRT27Q7Z3Y8 459 aa26.99■■□□□ 1.91
CLN3-218ENST00000565688 L3MBTL2Q969R5 705 aa26.98■■□□□ 1.91
CLN3-218ENST00000565688 A0A0G2JS52 829 aa26.97■■□□□ 1.91
CLN3-218ENST00000565688 MYT1Q01538 1121 aa26.97■■□□□ 1.91
CLN3-218ENST00000565688 SRPK2P78362 688 aaKnown RBP26.96■■□□□ 1.91
CLN3-218ENST00000565688 SF3B2Q13435 895 aaKnown RBP26.96■■□□□ 1.91
CLN3-218ENST00000565688 FAM98CQ17RN3 349 aaKnown RBP26.96■■□□□ 1.91
CLN3-218ENST00000565688 KIAA0232Q92628 1395 aa26.95■■□□□ 1.9
CLN3-218ENST00000565688 SPATA31A5Q5VU36 1347 aa26.94■■□□□ 1.9
CLN3-218ENST00000565688 SPATA31A7Q8IWB4 1347 aa26.94■■□□□ 1.9
CLN3-218ENST00000565688 SRCAPQ6ZRS2 3230 aa26.94■■□□□ 1.9
CLN3-218ENST00000565688 PHRF1Q9P1Y6 1649 aaKnown RBP26.93■■□□□ 1.9
CLN3-218ENST00000565688 PPIP5K1Q6PFW1 1433 aa26.92■■□□□ 1.9
CLN3-218ENST00000565688 NUTM2GQ5VZR2 741 aa26.91■■□□□ 1.9
CLN3-218ENST00000565688 ABTB2Q8N961 1025 aa26.91■■□□□ 1.9
CLN3-218ENST00000565688 QRICH2Q9H0J4 1663 aa26.91■■□□□ 1.9
CLN3-218ENST00000565688 SIN3AQ96ST3 1273 aa26.9■■□□□ 1.9
CLN3-218ENST00000565688 CABP2Q9NPB3 220 aa26.9■■□□□ 1.9
CLN3-218ENST00000565688 BRD4O60885 1362 aaPredicted RBP26.89■■□□□ 1.9
CLN3-218ENST00000565688 ZC3H6P61129 1189 aaKnown RBP26.89■■□□□ 1.9
CLN3-218ENST00000565688 CHRNA2Q15822 529 aa26.88■■□□□ 1.89
CLN3-218ENST00000565688 NEUROD1Q13562 356 aa26.87■■□□□ 1.89
CLN3-218ENST00000565688 DEFB132Q7Z7B7 95 aa26.86■■□□□ 1.89
CLN3-218ENST00000565688 TRPM1Q7Z4N2 1603 aa26.86■■□□□ 1.89
CLN3-218ENST00000565688 USP19O94966 1318 aa26.86■■□□□ 1.89
CLN3-218ENST00000565688 SPATA31A1Q5TZJ5 1347 aa26.86■■□□□ 1.89
CLN3-218ENST00000565688 NLRP13Q86W25 1043 aa26.85■■□□□ 1.89
CLN3-218ENST00000565688 CPDO75976 1380 aa26.84■■□□□ 1.89
CLN3-218ENST00000565688 NRKQ7Z2Y5 1582 aa26.84■■□□□ 1.89
CLN3-218ENST00000565688 STRN4Q9NRL3 753 aa26.84■■□□□ 1.89
CLN3-218ENST00000565688 THSD7AQ9UPZ6 1657 aa26.84■■□□□ 1.89
CLN3-218ENST00000565688 EVC2Q86UK5 1308 aa26.84■■□□□ 1.89
CLN3-218ENST00000565688 ROCK2O75116 1388 aaKnown RBP26.84■■□□□ 1.89
CLN3-218ENST00000565688 CABP1Q9NZU7 370 aa26.83■■□□□ 1.89
CLN3-218ENST00000565688 EVA1CP58658 441 aa26.82■■□□□ 1.88
CLN3-218ENST00000565688 BAG6P46379 1132 aa26.81■■□□□ 1.88
CLN3-218ENST00000565688 USP6P35125 1406 aa26.8■■□□□ 1.88
CLN3-218ENST00000565688 GCP02774 474 aa26.79■■□□□ 1.88
CLN3-218ENST00000565688 SSH2Q76I76 1423 aa26.79■■□□□ 1.88
CLN3-218ENST00000565688 CAMTA1Q9Y6Y1 1673 aa26.76■■□□□ 1.87
CLN3-218ENST00000565688 BARGINQ6ZT62 677 aa26.76■■□□□ 1.87
CLN3-218ENST00000565688 LMO7Q8WWI1 1683 aa26.76■■□□□ 1.87
CLN3-218ENST00000565688 RGPD1P0DJD0 1748 aa26.74■■□□□ 1.87
CLN3-218ENST00000565688 NLRP6P59044 892 aa26.74■■□□□ 1.87
CLN3-218ENST00000565688 FAM182BQ5T319 152 aa26.74■■□□□ 1.87
CLN3-218ENST00000565688 USP35Q9P2H5 1018 aa26.74■■□□□ 1.87
CLN3-218ENST00000565688 LARP1Q6PKG0 1096 aaKnown RBP26.73■■□□□ 1.87
CLN3-218ENST00000565688 ZNF692Q9BU19 519 aaPredicted RBP26.73■■□□□ 1.87
CLN3-218ENST00000565688 FAM196AQ6ZSG2 479 aa26.72■■□□□ 1.87
CLN3-218ENST00000565688 TCP11L2Q8N4U5 519 aa26.72■■□□□ 1.87
CLN3-218ENST00000565688 THRAP3Q9Y2W1 955 aaKnown RBP26.71■■□□□ 1.87
CLN3-218ENST00000565688 SLIT3O75094 1523 aa26.7■■□□□ 1.86
CLN3-218ENST00000565688 DISP2A7MBM2 1401 aa26.69■■□□□ 1.86
CLN3-218ENST00000565688 COL5A2P05997 1499 aaPredicted RBP26.68■■□□□ 1.86
CLN3-218ENST00000565688 PDE3BQ13370 1112 aa26.68■■□□□ 1.86
CLN3-218ENST00000565688 AATKQ6ZMQ8 1374 aa26.68■■□□□ 1.86
CLN3-218ENST00000565688 SBNO2Q9Y2G9 1366 aa26.68■■□□□ 1.86
CLN3-218ENST00000565688 EN1Q05925 392 aaPredicted RBP26.67■■□□□ 1.86
CLN3-218ENST00000565688 PIK3C2AO00443 1686 aa26.66■■□□□ 1.86
CLN3-218ENST00000565688 TTC21BQ7Z4L5 1316 aa26.65■■□□□ 1.86
CLN3-218ENST00000565688 CARD11Q9BXL7 1154 aa26.65■■□□□ 1.86
CLN3-218ENST00000565688 TNS1Q9HBL0 1735 aaKnown RBP26.65■■□□□ 1.86
CLN3-218ENST00000565688 CRB1P82279 1406 aa26.65■■□□□ 1.86
CLN3-218ENST00000565688 TTC21AQ8NDW8 1320 aa26.65■■□□□ 1.86
CLN3-218ENST00000565688 ZBTB7CA1YPR0 619 aa26.64■■□□□ 1.86
CLN3-218ENST00000565688 CPSF1Q10570 1443 aaKnown RBP26.64■■□□□ 1.85
CLN3-218ENST00000565688 TONSLQ96HA7 1378 aa26.63■■□□□ 1.85
CLN3-218ENST00000565688 TRIM37O94972 964 aa26.63■■□□□ 1.85
CLN3-218ENST00000565688 KCNH5Q8NCM2 988 aa26.63■■□□□ 1.85
CLN3-218ENST00000565688 AKAP12Q02952 1782 aa26.63■■□□□ 1.85
CLN3-218ENST00000565688 KTN1Q86UP2 1357 aaKnown RBP26.61■■□□□ 1.85
CLN3-218ENST00000565688 C11orf95C9JLR9 678 aaPredicted RBP26.6■■□□□ 1.85
CLN3-218ENST00000565688 PARD3Q8TEW0 1356 aa26.59■■□□□ 1.85
CLN3-218ENST00000565688 PARP4Q9UKK3 1724 aaKnown RBP26.59■■□□□ 1.85
CLN3-218ENST00000565688 ARHGEF25Q86VW2 580 aa26.58■■□□□ 1.85
CLN3-218ENST00000565688 PSDA5PKW4 1024 aaPredicted RBP26.57■■□□□ 1.84
CLN3-218ENST00000565688 APBA3O96018 575 aa26.57■■□□□ 1.84
CLN3-218ENST00000565688 EZH2Q15910 746 aaKnown RBP26.57■■□□□ 1.84
CLN3-218ENST00000565688 TOM1L2Q6ZVM7 507 aa26.57■■□□□ 1.84
CLN3-218ENST00000565688 CAMKK2Q96RR4 588 aa26.57■■□□□ 1.84
CLN3-218ENST00000565688 COL18A1P39060 1754 aa26.56■■□□□ 1.84
CLN3-218ENST00000565688 LRP5O75197 1615 aa26.56■■□□□ 1.84
CLN3-218ENST00000565688 WDR17Q8IZU2 1322 aa26.55■■□□□ 1.84
CLN3-218ENST00000565688 AXIN2Q9Y2T1 843 aa26.54■■□□□ 1.84
CLN3-218ENST00000565688 MON2Q7Z3U7 1717 aa26.53■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms