RNA–Protein interactions for RNA: ENST00000560236.1

LRRC28-218, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 703 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-218ENST00000560236 VARSP26640 1264 aaKnown RBP8.95□□□□□ -0.98
LRRC28-218ENST00000560236 NFX1Q12986 1120 aaKnown RBP8.95□□□□□ -0.98
LRRC28-218ENST00000560236 TLL2Q9Y6L7 1015 aa8.95□□□□□ -0.98
LRRC28-218ENST00000560236 PLEKHG3A1L390 1219 aa8.94□□□□□ -0.98
LRRC28-218ENST00000560236 CSPP1Q1MSJ5 1256 aa8.94□□□□□ -0.98
LRRC28-218ENST00000560236 PRPF38BQ5VTL8 546 aaKnown RBP8.94□□□□□ -0.98
LRRC28-218ENST00000560236 CABLES1Q8TDN4 633 aa8.94□□□□□ -0.98
LRRC28-218ENST00000560236 BMP1P13497 986 aa8.93□□□□□ -0.98
LRRC28-218ENST00000560236 PDE4DQ08499 809 aa8.93□□□□□ -0.98
LRRC28-218ENST00000560236 TERTO14746 1132 aaKnown RBP8.92□□□□□ -0.98
LRRC28-218ENST00000560236 TRIM46Q7Z4K8 759 aa8.91□□□□□ -0.98
LRRC28-218ENST00000560236 MPNDQ8N594 471 aa8.91□□□□□ -0.98
LRRC28-218ENST00000560236 MAP10Q9P2G4 905 aa8.91□□□□□ -0.98
LRRC28-218ENST00000560236 NUTM2BA6NNL0 878 aaPredicted RBP8.9□□□□□ -0.98
LRRC28-218ENST00000560236 NUTM2EB1AL46 878 aaPredicted RBP8.9□□□□□ -0.98
LRRC28-218ENST00000560236 F12P00748 615 aaPredicted RBP8.9□□□□□ -0.98
LRRC28-218ENST00000560236 NNTQ13423 1086 aa8.9□□□□□ -0.98
LRRC28-218ENST00000560236 NUTM2DQ5VT03 806 aaPredicted RBP8.9□□□□□ -0.98
LRRC28-218ENST00000560236 MYSM1Q5VVJ2 828 aa8.9□□□□□ -0.98
LRRC28-218ENST00000560236 NUTM2AQ8IVF1 878 aaPredicted RBP8.9□□□□□ -0.98
LRRC28-218ENST00000560236 FAM174AQ8TBP5 190 aa8.9□□□□□ -0.98
LRRC28-218ENST00000560236 TSC1Q92574 1164 aa8.9□□□□□ -0.98
LRRC28-218ENST00000560236 SLC24A3Q9HC58 644 aa8.89□□□□□ -0.99
LRRC28-218ENST00000560236 LIMD1Q9UGP4 676 aa8.89□□□□□ -0.99
LRRC28-218ENST00000560236 PER1O15534 1290 aaPredicted RBP8.88□□□□□ -0.99
LRRC28-218ENST00000560236 QPCTQ16769 361 aa8.88□□□□□ -0.99
LRRC28-218ENST00000560236 FOXJ1Q92949 421 aa8.88□□□□□ -0.99
LRRC28-218ENST00000560236 WIPF1O43516 503 aa8.87□□□□□ -0.99
LRRC28-218ENST00000560236 ARID5BQ14865 1188 aa8.87□□□□□ -0.99
LRRC28-218ENST00000560236 AGERQ15109 404 aa8.87□□□□□ -0.99
LRRC28-218ENST00000560236 TUSC1Q2TAM9 212 aa8.87□□□□□ -0.99
LRRC28-218ENST00000560236 ADH1CP00326 375 aa8.86□□□□□ -0.99
LRRC28-218ENST00000560236 LILRB3O75022 631 aa8.85□□□□□ -0.99
LRRC28-218ENST00000560236 WDR4P57081 412 aaKnown RBP8.85□□□□□ -0.99
LRRC28-218ENST00000560236 INSM1Q01101 510 aaPredicted RBP8.85□□□□□ -0.99
LRRC28-218ENST00000560236 LCE2CQ5TA81 110 aa8.85□□□□□ -0.99
LRRC28-218ENST00000560236 BPHLQ86WA6 291 aaPredicted RBP8.85□□□□□ -0.99
LRRC28-218ENST00000560236 ZFP42Q96MM3 310 aa8.85□□□□□ -0.99
LRRC28-218ENST00000560236 NXF1Q9UBU9 619 aaKnown RBP8.85□□□□□ -0.99
LRRC28-218ENST00000560236 TIMP2P16035 220 aa8.84□□□□□ -0.99
LRRC28-218ENST00000560236 HELBQ8NG08 1087 aaPredicted RBP8.84□□□□□ -0.99
LRRC28-218ENST00000560236 SLC16A10Q8TF71 515 aa8.84□□□□□ -0.99
LRRC28-218ENST00000560236 CDK15Q96Q40 435 aa8.84□□□□□ -0.99
LRRC28-218ENST00000560236 CLK2P49760 499 aaKnown RBP8.83□□□□□ -1
LRRC28-218ENST00000560236 SCARF1Q14162 830 aa8.83□□□□□ -1
LRRC28-218ENST00000560236 MRPL14Q6P1L8 145 aaKnown RBP8.83□□□□□ -1
LRRC28-218ENST00000560236 ARMC2Q8NEN0 867 aa8.83□□□□□ -1
LRRC28-218ENST00000560236 RSPH6AQ9H0K4 717 aa8.83□□□□□ -1
LRRC28-218ENST00000560236 C4orf48Q5BLP8 95 aa8.82□□□□□ -1
LRRC28-218ENST00000560236 RTL5Q5HYW3 569 aaPredicted RBP8.82□□□□□ -1
LRRC28-218ENST00000560236 KLF16Q9BXK1 252 aaPredicted RBP8.82□□□□□ -1
LRRC28-218ENST00000560236 NR5A1Q13285 461 aa8.81□□□□□ -1
LRRC28-218ENST00000560236 PURBQ96QR8 312 aaKnown RBP8.81□□□□□ -1
LRRC28-218ENST00000560236 POLR3EQ9NVU0 708 aa8.81□□□□□ -1
LRRC28-218ENST00000560236 STK17AQ9UEE5 414 aa8.81□□□□□ -1
LRRC28-218ENST00000560236 NBPF14Q5TI25 921 aa8.8□□□□□ -1
LRRC28-218ENST00000560236 NPAS3Q8IXF0 933 aa8.8□□□□□ -1
LRRC28-218ENST00000560236 ZIC2O95409 532 aaPredicted RBP8.79□□□□□ -1
LRRC28-218ENST00000560236 NR3C2P08235 984 aa8.79□□□□□ -1
LRRC28-218ENST00000560236 GRM5P41594 1212 aa8.79□□□□□ -1
LRRC28-218ENST00000560236 ZFAND3Q9H8U3 227 aa8.79□□□□□ -1
LRRC28-218ENST00000560236 VEGFBP49765 207 aa8.78□□□□□ -1
LRRC28-218ENST00000560236 IRF7Q92985 503 aa8.78□□□□□ -1
LRRC28-218ENST00000560236 ITPKCQ96DU7 683 aa8.78□□□□□ -1
LRRC28-218ENST00000560236 H3BM21 787 aa8.77□□□□□ -1.01
LRRC28-218ENST00000560236 SH3RF1Q7Z6J0 888 aa8.77□□□□□ -1.01
LRRC28-218ENST00000560236 MAGEB6P1A0A0J9YX57 407 aa8.76□□□□□ -1.01
LRRC28-218ENST00000560236 SH3BP5LQ7L8J4 393 aa8.76□□□□□ -1.01
LRRC28-218ENST00000560236 C1QTNF2Q9BXJ5 285 aa8.76□□□□□ -1.01
LRRC28-218ENST00000560236 FSHRP23945 695 aa8.75□□□□□ -1.01
LRRC28-218ENST00000560236 GMPRP36959 345 aa8.75□□□□□ -1.01
LRRC28-218ENST00000560236 CTDSPL2Q05D32 466 aa8.75□□□□□ -1.01
LRRC28-218ENST00000560236 C6orf118Q5T5N4 469 aa8.75□□□□□ -1.01
LRRC28-218ENST00000560236 VASH1Q7L8A9 365 aaPredicted RBP8.75□□□□□ -1.01
LRRC28-218ENST00000560236 SOBPA7XYQ1 873 aa8.74□□□□□ -1.01
LRRC28-218ENST00000560236 TRMT44Q8IYL2 757 aaKnown RBP8.74□□□□□ -1.01
LRRC28-218ENST00000560236 GPKOWQ92917 476 aaPredicted RBP eCLIP8.74□□□□□ -1.01
LRRC28-218ENST00000560236 CARD14Q9BXL6 1004 aa8.74□□□□□ -1.01
LRRC28-218ENST00000560236 MAP4K5Q9Y4K4 846 aa8.74□□□□□ -1.01
LRRC28-218ENST00000560236 UPP2O95045 317 aa8.73□□□□□ -1.01
LRRC28-218ENST00000560236 MAN1A2O60476 641 aa8.72□□□□□ -1.01
LRRC28-218ENST00000560236 BMP2P12643 396 aa8.72□□□□□ -1.01
LRRC28-218ENST00000560236 SKIV2LQ15477 1246 aaKnown RBP8.72□□□□□ -1.01
LRRC28-218ENST00000560236 ATP1B4Q9UN42 357 aaPredicted RBP8.72□□□□□ -1.01
LRRC28-218ENST00000560236 ERBB4Q15303 1308 aa8.72□□□□□ -1.01
LRRC28-218ENST00000560236 LINC00528Q8N1L1 170 aa8.71□□□□□ -1.02
LRRC28-218ENST00000560236 MEIOBQ8N635 442 aa8.71□□□□□ -1.02
LRRC28-218ENST00000560236 ERFEQ4G0M1 354 aa8.7□□□□□ -1.02
LRRC28-218ENST00000560236 SH3D19Q5HYK7 790 aa8.7□□□□□ -1.02
LRRC28-218ENST00000560236 CCDC116Q8IYX3 515 aa8.7□□□□□ -1.02
LRRC28-218ENST00000560236 LRRN4Q8WUT4 740 aa8.7□□□□□ -1.02
LRRC28-218ENST00000560236 KDM4CQ9H3R0 1056 aa8.7□□□□□ -1.02
LRRC28-218ENST00000560236 GPBP1L1Q9HC44 474 aaPredicted RBP8.7□□□□□ -1.02
LRRC28-218ENST00000560236 EMILIN1Q9Y6C2 1016 aa8.7□□□□□ -1.02
LRRC28-218ENST00000560236 FAM181BA6NEQ2 426 aa8.69□□□□□ -1.02
LRRC28-218ENST00000560236 PDXDC2PQ6P474 469 aa8.69□□□□□ -1.02
LRRC28-218ENST00000560236 FKBPLQ9UIM3 349 aa8.69□□□□□ -1.02
LRRC28-218ENST00000560236 ZSCAN1Q8NBB4 408 aa8.68□□□□□ -1.02
LRRC28-218ENST00000560236 PROCA1Q8NCQ7 364 aaPredicted RBP8.68□□□□□ -1.02
LRRC28-218ENST00000560236 DDRGK1Q96HY6 314 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms