RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 TMEM131LA2VDJ0 1609 aa10.87□□□□□ -0.67
SPG11-209ENST00000558253 DIP2BQ9P265 1576 aa10.86□□□□□ -0.67
SPG11-209ENST00000558253 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.86□□□□□ -0.67
SPG11-209ENST00000558253 RUNDC1Q96C34 613 aa10.86□□□□□ -0.67
SPG11-209ENST00000558253 PNNQ9H307 717 aaKnown RBP10.86□□□□□ -0.67
SPG11-209ENST00000558253 SIGLEC1Q9BZZ2 1709 aa10.86□□□□□ -0.67
SPG11-209ENST00000558253 PREX1Q8TCU6 1659 aa10.85□□□□□ -0.67
SPG11-209ENST00000558253 TMEM132EQ6IEE7 984 aa10.85□□□□□ -0.67
SPG11-209ENST00000558253 WDR63Q8IWG1 891 aa10.85□□□□□ -0.67
SPG11-209ENST00000558253 EXOC6Q8TAG9 804 aa10.85□□□□□ -0.67
SPG11-209ENST00000558253 SIRT1Q96EB6 747 aa10.85□□□□□ -0.67
SPG11-209ENST00000558253 SLC12A5Q9H2X9 1139 aa10.85□□□□□ -0.67
SPG11-209ENST00000558253 PCDHB8Q9UN66 801 aa10.85□□□□□ -0.67
SPG11-209ENST00000558253 SALL2Q9Y467 1007 aaPredicted RBP10.85□□□□□ -0.67
SPG11-209ENST00000558253 PLEKHH1Q9ULM0 1364 aa10.85□□□□□ -0.67
SPG11-209ENST00000558253 MED14O60244 1454 aa10.85□□□□□ -0.67
SPG11-209ENST00000558253 NKTRP30414 1462 aaKnown RBP10.85□□□□□ -0.67
SPG11-209ENST00000558253 RIMBP3CA6NJZ7 1639 aa10.84□□□□□ -0.67
SPG11-209ENST00000558253 RIMBP3BA6NNM3 1639 aa10.84□□□□□ -0.67
SPG11-209ENST00000558253 RIMBP3Q9UFD9 1639 aa10.84□□□□□ -0.67
SPG11-209ENST00000558253 POTEB2H3BUK9 544 aa10.84□□□□□ -0.67
SPG11-209ENST00000558253 ECM2O94769 699 aaPredicted RBP10.84□□□□□ -0.67
SPG11-209ENST00000558253 ASTLQ6HA08 431 aaPredicted RBP10.84□□□□□ -0.67
SPG11-209ENST00000558253 DLC1Q96QB1 1528 aa10.84□□□□□ -0.67
SPG11-209ENST00000558253 APAF1O14727 1248 aa10.83□□□□□ -0.68
SPG11-209ENST00000558253 ATMINO43313 823 aaPredicted RBP10.83□□□□□ -0.68
SPG11-209ENST00000558253 TIE1P35590 1138 aa10.83□□□□□ -0.68
SPG11-209ENST00000558253 TRPC6Q9Y210 931 aa10.83□□□□□ -0.68
SPG11-209ENST00000558253 ARHGEF28Q8N1W1 1705 aaKnown RBP10.83□□□□□ -0.68
SPG11-209ENST00000558253 YTHDC2Q9H6S0 1430 aaKnown RBP10.83□□□□□ -0.68
SPG11-209ENST00000558253 SPATA31D1Q6ZQQ2 1576 aa10.82□□□□□ -0.68
SPG11-209ENST00000558253 ABCC11Q96J66 1382 aa10.82□□□□□ -0.68
SPG11-209ENST00000558253 CT47B1P0C2W7 299 aaPredicted RBP10.82□□□□□ -0.68
SPG11-209ENST00000558253 PDE3AQ14432 1141 aa10.82□□□□□ -0.68
SPG11-209ENST00000558253 CENPQQ7L2Z9 268 aaPredicted RBP10.82□□□□□ -0.68
SPG11-209ENST00000558253 HDGFL2Q7Z4V5 671 aaPredicted RBP10.82□□□□□ -0.68
SPG11-209ENST00000558253 POGKQ9P215 609 aa10.82□□□□□ -0.68
SPG11-209ENST00000558253 TULP4Q9NRJ4 1543 aa10.82□□□□□ -0.68
SPG11-209ENST00000558253 ANP32AP39687 249 aaKnown RBP10.81□□□□□ -0.68
SPG11-209ENST00000558253 ERICH6Q7L0X2 663 aa10.81□□□□□ -0.68
SPG11-209ENST00000558253 RNF25Q96BH1 459 aaPredicted RBP10.81□□□□□ -0.68
SPG11-209ENST00000558253 OTUD5Q96G74 571 aa10.81□□□□□ -0.68
SPG11-209ENST00000558253 PTPRMP28827 1452 aa10.81□□□□□ -0.68
SPG11-209ENST00000558253 SRPK2P78362 688 aaKnown RBP10.8□□□□□ -0.68
SPG11-209ENST00000558253 WWC1Q8IX03 1113 aa10.8□□□□□ -0.68
SPG11-209ENST00000558253 ESF1Q9H501 851 aaKnown RBP10.8□□□□□ -0.68
SPG11-209ENST00000558253 ALKQ9UM73 1620 aa10.8□□□□□ -0.68
SPG11-209ENST00000558253 CLTCQ00610 1675 aaKnown RBP10.79□□□□□ -0.68
SPG11-209ENST00000558253 RIOK3O14730 519 aaKnown RBP10.79□□□□□ -0.68
SPG11-209ENST00000558253 MTHFSP49914 203 aa10.79□□□□□ -0.68
SPG11-209ENST00000558253 CRBNQ96SW2 442 aa10.79□□□□□ -0.68
SPG11-209ENST00000558253 MYH16Q9H6N6 1097 aa10.79□□□□□ -0.68
SPG11-209ENST00000558253 BMP2KQ9NSY1 1161 aaPredicted RBP10.79□□□□□ -0.68
SPG11-209ENST00000558253 CCDC146Q8IYE0 955 aa10.78□□□□□ -0.68
SPG11-209ENST00000558253 PRAM1Q96QH2 718 aa10.78□□□□□ -0.68
SPG11-209ENST00000558253 CABP2Q9NPB3 220 aa10.78□□□□□ -0.68
SPG11-209ENST00000558253 METRNQ9UJH8 293 aa10.78□□□□□ -0.68
SPG11-209ENST00000558253 A2ML1A8K2U0 1454 aa10.78□□□□□ -0.68
SPG11-209ENST00000558253 RIMS2Q9UQ26 1411 aa10.77□□□□□ -0.68
SPG11-209ENST00000558253 TCP11L2Q8N4U5 519 aa10.77□□□□□ -0.69
SPG11-209ENST00000558253 SLC39A7Q92504 469 aa10.77□□□□□ -0.69
SPG11-209ENST00000558253 ARHGEF40Q8TER5 1519 aa10.77□□□□□ -0.69
SPG11-209ENST00000558253 CFAP65Q6ZU64 1925 aaKnown RBP10.76□□□□□ -0.69
SPG11-209ENST00000558253 ATP7BP35670 1465 aa10.76□□□□□ -0.69
SPG11-209ENST00000558253 IQSEC2Q5JU85 1478 aa10.76□□□□□ -0.69
SPG11-209ENST00000558253 TTLL13PA6NNM8 815 aa10.76□□□□□ -0.69
SPG11-209ENST00000558253 C7P10643 843 aa10.76□□□□□ -0.69
SPG11-209ENST00000558253 PDAP1Q13442 181 aaKnown RBP10.76□□□□□ -0.69
SPG11-209ENST00000558253 FBXO31Q5XUX0 539 aaPredicted RBP10.76□□□□□ -0.69
SPG11-209ENST00000558253 STK26Q9P289 416 aa10.76□□□□□ -0.69
SPG11-209ENST00000558253 IL16Q14005 1332 aa10.76□□□□□ -0.69
SPG11-209ENST00000558253 KDM2BQ8NHM5 1336 aa10.76□□□□□ -0.69
SPG11-209ENST00000558253 A0A1W2PP64 1363 aa10.76□□□□□ -0.69
SPG11-209ENST00000558253 FAM135BQ49AJ0 1406 aa10.75□□□□□ -0.69
SPG11-209ENST00000558253 SENP3-EIF4A1A0A087X0R7 540 aa10.75□□□□□ -0.69
SPG11-209ENST00000558253 RGL2O15211 777 aa10.75□□□□□ -0.69
SPG11-209ENST00000558253 PSEN1P49768 467 aa10.75□□□□□ -0.69
SPG11-209ENST00000558253 ATN1P54259 1190 aaPredicted RBP10.75□□□□□ -0.69
SPG11-209ENST00000558253 IPO9Q96P70 1041 aaKnown RBP10.75□□□□□ -0.69
SPG11-209ENST00000558253 CDK19Q9BWU1 502 aa10.75□□□□□ -0.69
SPG11-209ENST00000558253 SHPRHQ149N8 1683 aa10.74□□□□□ -0.69
SPG11-209ENST00000558253 PLIN1O60240 522 aa10.74□□□□□ -0.69
SPG11-209ENST00000558253 NUTM2DQ5VT03 806 aaPredicted RBP10.74□□□□□ -0.69
SPG11-209ENST00000558253 TMEM106CQ9BVX2 250 aa10.74□□□□□ -0.69
SPG11-209ENST00000558253 BACH2Q9BYV9 841 aa10.74□□□□□ -0.69
SPG11-209ENST00000558253 ZMYM3Q14202 1370 aa10.74□□□□□ -0.69
SPG11-209ENST00000558253 PNPLA6Q8IY17 1366 aa10.74□□□□□ -0.69
SPG11-209ENST00000558253 FYB1O15117 783 aa10.73□□□□□ -0.69
SPG11-209ENST00000558253 U2AF1L5P0DN76 240 aaPredicted RBP10.73□□□□□ -0.69
SPG11-209ENST00000558253 PDE4AP27815 886 aa10.73□□□□□ -0.69
SPG11-209ENST00000558253 U2AF1Q01081 240 aaKnown RBP eCLIP10.73□□□□□ -0.69
SPG11-209ENST00000558253 RTN4Q9NQC3 1192 aaKnown RBP10.73□□□□□ -0.69
SPG11-209ENST00000558253 TAOK2Q9UL54 1235 aa10.73□□□□□ -0.69
SPG11-209ENST00000558253 TECPR2O15040 1411 aa10.73□□□□□ -0.69
SPG11-209ENST00000558253 FCHSD2O94868 740 aa10.72□□□□□ -0.69
SPG11-209ENST00000558253 NEFMP07197 916 aa10.72□□□□□ -0.69
SPG11-209ENST00000558253 CALD1Q05682 793 aaKnown RBP10.72□□□□□ -0.69
SPG11-209ENST00000558253 ZNF428Q96B54 188 aa10.72□□□□□ -0.69
SPG11-209ENST00000558253 DDRGK1Q96HY6 314 aa10.72□□□□□ -0.69
SPG11-209ENST00000558253 NOP58Q9Y2X3 529 aaKnown RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms