RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 LYPD8Q6UX82 237 aa7.21□□□□□ -1.26
VPS13C-205ENST00000558088 FAM174AQ8TBP5 190 aa7.21□□□□□ -1.26
VPS13C-205ENST00000558088 SLC16A10Q8TF71 515 aa7.21□□□□□ -1.26
VPS13C-205ENST00000558088 PRPF38BQ5VTL8 546 aaKnown RBP7.2□□□□□ -1.26
VPS13C-205ENST00000558088 RIC3Q7Z5B4 369 aa7.2□□□□□ -1.26
VPS13C-205ENST00000558088 TLL2Q9Y6L7 1015 aa7.2□□□□□ -1.26
VPS13C-205ENST00000558088 BMP1P13497 986 aa7.19□□□□□ -1.26
VPS13C-205ENST00000558088 NUTM2BA6NNL0 878 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-205ENST00000558088 NUTM2EB1AL46 878 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-205ENST00000558088 HRCP23327 699 aa7.18□□□□□ -1.26
VPS13C-205ENST00000558088 NNTQ13423 1086 aa7.18□□□□□ -1.26
VPS13C-205ENST00000558088 AGERQ15109 404 aa7.18□□□□□ -1.26
VPS13C-205ENST00000558088 CSPP1Q1MSJ5 1256 aa7.18□□□□□ -1.26
VPS13C-205ENST00000558088 NUTM2DQ5VT03 806 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-205ENST00000558088 NUTM2AQ8IVF1 878 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-205ENST00000558088 MPNDQ8N594 471 aa7.18□□□□□ -1.26
VPS13C-205ENST00000558088 TSC1Q92574 1164 aa7.18□□□□□ -1.26
VPS13C-205ENST00000558088 PCDHB15Q9Y5E8 787 aa7.18□□□□□ -1.26
VPS13C-205ENST00000558088 CFAP99D6REC4 459 aa7.17□□□□□ -1.26
VPS13C-205ENST00000558088 WIPF1O43516 503 aa7.17□□□□□ -1.26
VPS13C-205ENST00000558088 SCARF1Q14162 830 aa7.17□□□□□ -1.26
VPS13C-205ENST00000558088 STK17AQ9UEE5 414 aa7.17□□□□□ -1.26
VPS13C-205ENST00000558088 ADH1CP00326 375 aa7.16□□□□□ -1.26
VPS13C-205ENST00000558088 ARID5BQ14865 1188 aa7.16□□□□□ -1.26
VPS13C-205ENST00000558088 TRIM46Q7Z4K8 759 aa7.16□□□□□ -1.26
VPS13C-205ENST00000558088 MAP10Q9P2G4 905 aa7.16□□□□□ -1.26
VPS13C-205ENST00000558088 NXF1Q9UBU9 619 aaKnown RBP7.16□□□□□ -1.26
VPS13C-205ENST00000558088 WDR4P57081 412 aaKnown RBP7.15□□□□□ -1.26
VPS13C-205ENST00000558088 PDE4DQ08499 809 aa7.15□□□□□ -1.26
VPS13C-205ENST00000558088 BPHLQ86WA6 291 aaPredicted RBP7.15□□□□□ -1.26
VPS13C-205ENST00000558088 ARMC2Q8NEN0 867 aa7.15□□□□□ -1.26
VPS13C-205ENST00000558088 HELBQ8NG08 1087 aaPredicted RBP7.15□□□□□ -1.26
VPS13C-205ENST00000558088 CABLES1Q8TDN4 633 aa7.15□□□□□ -1.26
VPS13C-205ENST00000558088 F12P00748 615 aaPredicted RBP7.14□□□□□ -1.27
VPS13C-205ENST00000558088 NPAS3Q8IXF0 933 aa7.14□□□□□ -1.27
VPS13C-205ENST00000558088 NBPF14Q5TI25 921 aa7.13□□□□□ -1.27
VPS13C-205ENST00000558088 MYSM1Q5VVJ2 828 aa7.13□□□□□ -1.27
VPS13C-205ENST00000558088 MRPL14Q6P1L8 145 aaKnown RBP7.13□□□□□ -1.27
VPS13C-205ENST00000558088 FOXJ1Q92949 421 aa7.13□□□□□ -1.27
VPS13C-205ENST00000558088 IRF7Q92985 503 aa7.13□□□□□ -1.27
VPS13C-205ENST00000558088 ZFP42Q96MM3 310 aa7.13□□□□□ -1.27
VPS13C-205ENST00000558088 FAM181BA6NEQ2 426 aa7.12□□□□□ -1.27
VPS13C-205ENST00000558088 TIMP2P16035 220 aa7.12□□□□□ -1.27
VPS13C-205ENST00000558088 NR5A1Q13285 461 aa7.12□□□□□ -1.27
VPS13C-205ENST00000558088 TUSC1Q2TAM9 212 aa7.12□□□□□ -1.27
VPS13C-205ENST00000558088 RSPH6AQ9H0K4 717 aa7.12□□□□□ -1.27
VPS13C-205ENST00000558088 UPP2O95045 317 aa7.11□□□□□ -1.27
VPS13C-205ENST00000558088 CDK15Q96Q40 435 aa7.11□□□□□ -1.27
VPS13C-205ENST00000558088 LIMD1Q9UGP4 676 aa7.11□□□□□ -1.27
VPS13C-205ENST00000558088 PER1O15534 1290 aaPredicted RBP7.1□□□□□ -1.27
VPS13C-205ENST00000558088 CLK2P49760 499 aaKnown RBP7.1□□□□□ -1.27
VPS13C-205ENST00000558088 QPCTQ16769 361 aa7.1□□□□□ -1.27
VPS13C-205ENST00000558088 PURBQ96QR8 312 aaKnown RBP7.1□□□□□ -1.27
VPS13C-205ENST00000558088 LILRB3O75022 631 aa7.09□□□□□ -1.27
VPS13C-205ENST00000558088 ZIC2O95409 532 aaPredicted RBP7.09□□□□□ -1.27
VPS13C-205ENST00000558088 SLC24A3Q9HC58 644 aa7.09□□□□□ -1.27
VPS13C-205ENST00000558088 H3BM21 787 aa7.08□□□□□ -1.28
VPS13C-205ENST00000558088 MAN1A2O60476 641 aa7.08□□□□□ -1.28
VPS13C-205ENST00000558088 MAGEB6P1A0A0J9YX57 407 aa7.07□□□□□ -1.28
VPS13C-205ENST00000558088 VEGFBP49765 207 aa7.07□□□□□ -1.28
VPS13C-205ENST00000558088 VASH1Q7L8A9 365 aaPredicted RBP7.07□□□□□ -1.28
VPS13C-205ENST00000558088 GPKOWQ92917 476 aaPredicted RBP eCLIP7.07□□□□□ -1.28
VPS13C-205ENST00000558088 ITPKCQ96DU7 683 aa7.07□□□□□ -1.28
VPS13C-205ENST00000558088 ATP1B4Q9UN42 357 aaPredicted RBP7.07□□□□□ -1.28
VPS13C-205ENST00000558088 BMP2P12643 396 aa7.06□□□□□ -1.28
VPS13C-205ENST00000558088 FSHRP23945 695 aa7.06□□□□□ -1.28
VPS13C-205ENST00000558088 GMPRP36959 345 aa7.06□□□□□ -1.28
VPS13C-205ENST00000558088 C6orf118Q5T5N4 469 aa7.06□□□□□ -1.28
VPS13C-205ENST00000558088 LCE2CQ5TA81 110 aa7.06□□□□□ -1.28
VPS13C-205ENST00000558088 KLF16Q9BXK1 252 aaPredicted RBP7.06□□□□□ -1.28
VPS13C-205ENST00000558088 ZFAND3Q9H8U3 227 aa7.06□□□□□ -1.28
VPS13C-205ENST00000558088 POLR3EQ9NVU0 708 aa7.06□□□□□ -1.28
VPS13C-205ENST00000558088 NR3C2P08235 984 aa7.05□□□□□ -1.28
VPS13C-205ENST00000558088 C4orf48Q5BLP8 95 aa7.05□□□□□ -1.28
VPS13C-205ENST00000558088 RTL5Q5HYW3 569 aaPredicted RBP7.05□□□□□ -1.28
VPS13C-205ENST00000558088 CARD14Q9BXL6 1004 aa7.05□□□□□ -1.28
VPS13C-205ENST00000558088 MAP4K5Q9Y4K4 846 aa7.05□□□□□ -1.28
VPS13C-205ENST00000558088 GRM5P41594 1212 aa7.04□□□□□ -1.28
VPS13C-205ENST00000558088 ZSCAN1Q8NBB4 408 aa7.04□□□□□ -1.28
VPS13C-205ENST00000558088 C1QTNF2Q9BXJ5 285 aa7.04□□□□□ -1.28
VPS13C-205ENST00000558088 EMILIN1Q9Y6C2 1016 aa7.04□□□□□ -1.28
VPS13C-205ENST00000558088 SH3BP5LQ7L8J4 393 aa7.03□□□□□ -1.28
VPS13C-205ENST00000558088 SH3RF1Q7Z6J0 888 aa7.03□□□□□ -1.28
VPS13C-205ENST00000558088 TRMT44Q8IYL2 757 aaKnown RBP7.03□□□□□ -1.28
VPS13C-205ENST00000558088 CCDC116Q8IYX3 515 aa7.03□□□□□ -1.28
VPS13C-205ENST00000558088 LINC00528Q8N1L1 170 aa7.03□□□□□ -1.28
VPS13C-205ENST00000558088 MEIOBQ8N635 442 aa7.03□□□□□ -1.28
VPS13C-205ENST00000558088 TSEN34Q9BSV6 310 aaKnown RBP7.02□□□□□ -1.29
VPS13C-205ENST00000558088 SOBPA7XYQ1 873 aa7.01□□□□□ -1.29
VPS13C-205ENST00000558088 PNMA1Q8ND90 353 aa7.01□□□□□ -1.29
VPS13C-205ENST00000558088 SLC10A4Q96EP9 437 aa7.01□□□□□ -1.29
VPS13C-205ENST00000558088 ARHGAP9Q9BRR9 750 aa7.01□□□□□ -1.29
VPS13C-205ENST00000558088 PGPEP1Q9NXJ5 209 aa7.01□□□□□ -1.29
VPS13C-205ENST00000558088 CDV3Q9UKY7 258 aaKnown RBP7.01□□□□□ -1.29
VPS13C-205ENST00000558088 ERBB4Q15303 1308 aa7.01□□□□□ -1.29
VPS13C-205ENST00000558088 CTDSPL2Q05D32 466 aa7□□□□□ -1.29
VPS13C-205ENST00000558088 ERFEQ4G0M1 354 aa7□□□□□ -1.29
VPS13C-205ENST00000558088 DDRGK1Q96HY6 314 aa7□□□□□ -1.29
VPS13C-205ENST00000558088 ZC3H4Q9UPT8 1303 aaKnown RBP7□□□□□ -1.29
VPS13C-205ENST00000558088 DHX9Q08211 1270 aaKnown RBP6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms