RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 TLL1O43897 1013 aa10.18□□□□□ -0.78
CKS1BP1-201ENST00000555221 TJAP1Q5JTD0 557 aa10.18□□□□□ -0.78
CKS1BP1-201ENST00000555221 MAP10Q9P2G4 905 aa10.18□□□□□ -0.78
CKS1BP1-201ENST00000555221 KCNH2Q12809 1159 aa10.17□□□□□ -0.78
CKS1BP1-201ENST00000555221 PRDM9Q9NQV7 894 aa10.17□□□□□ -0.78
CKS1BP1-201ENST00000555221 EIF4G2P78344 907 aaKnown RBP eCLIP10.16□□□□□ -0.78
CKS1BP1-201ENST00000555221 NR1H3Q13133 447 aa10.16□□□□□ -0.78
CKS1BP1-201ENST00000555221 GPKOWQ92917 476 aaPredicted RBP eCLIP10.16□□□□□ -0.78
CKS1BP1-201ENST00000555221 SLC6A16Q9GZN6 736 aa10.16□□□□□ -0.78
CKS1BP1-201ENST00000555221 ZBBXA8MT70 800 aa10.15□□□□□ -0.78
CKS1BP1-201ENST00000555221 SEMA3FQ13275 785 aa10.15□□□□□ -0.78
CKS1BP1-201ENST00000555221 ALG2Q9H553 416 aa10.15□□□□□ -0.78
CKS1BP1-201ENST00000555221 NBPF14Q5TI25 921 aa10.14□□□□□ -0.79
CKS1BP1-201ENST00000555221 ADAMTS19Q8TE59 1207 aa10.14□□□□□ -0.79
CKS1BP1-201ENST00000555221 ZNF516Q92618 1163 aa10.13□□□□□ -0.79
CKS1BP1-201ENST00000555221 GPSM3Q9Y4H4 160 aa10.13□□□□□ -0.79
CKS1BP1-201ENST00000555221 FBXO45P0C2W1 286 aa10.12□□□□□ -0.79
CKS1BP1-201ENST00000555221 PDXDC2PQ6P474 469 aa10.12□□□□□ -0.79
CKS1BP1-201ENST00000555221 ZNF592Q92610 1267 aa10.12□□□□□ -0.79
CKS1BP1-201ENST00000555221 PTK2Q05397 1052 aa10.11□□□□□ -0.79
CKS1BP1-201ENST00000555221 CCDC24Q8N4L8 307 aa10.11□□□□□ -0.79
CKS1BP1-201ENST00000555221 PCDH10Q9P2E7 1040 aa10.11□□□□□ -0.79
CKS1BP1-201ENST00000555221 HCSTQ9UBK5 93 aa10.11□□□□□ -0.79
CKS1BP1-201ENST00000555221 PPP1R15AO75807 674 aaPredicted RBP10.1□□□□□ -0.79
CKS1BP1-201ENST00000555221 UNC93B1Q9H1C4 597 aa10.09□□□□□ -0.79
CKS1BP1-201ENST00000555221 PPP1R12CQ9BZL4 782 aa10.08□□□□□ -0.8
CKS1BP1-201ENST00000555221 S1PR4O95977 384 aa10.07□□□□□ -0.8
CKS1BP1-201ENST00000555221 MCCD1P59942 119 aaPredicted RBP10.07□□□□□ -0.8
CKS1BP1-201ENST00000555221 NKX2-3Q8TAU0 364 aa10.07□□□□□ -0.8
CKS1BP1-201ENST00000555221 RNF166Q96A37 237 aaPredicted RBP10.07□□□□□ -0.8
CKS1BP1-201ENST00000555221 KCNC4Q03721 635 aa10.06□□□□□ -0.8
CKS1BP1-201ENST00000555221 PALM3A6NDB9 673 aaPredicted RBP10.05□□□□□ -0.8
CKS1BP1-201ENST00000555221 PTCRAQ6ISU1 281 aaPredicted RBP10.05□□□□□ -0.8
CKS1BP1-201ENST00000555221 ARHGAP9Q9BRR9 750 aa10.05□□□□□ -0.8
CKS1BP1-201ENST00000555221 FCF1Q9Y324 198 aaKnown RBP10.05□□□□□ -0.8
CKS1BP1-201ENST00000555221 ACIN1Q9UKV3 1341 aaKnown RBP10.05□□□□□ -0.8
CKS1BP1-201ENST00000555221 ITGBL1O95965 494 aaPredicted RBP10.04□□□□□ -0.8
CKS1BP1-201ENST00000555221 CFAP70Q5T0N1 1121 aa10.04□□□□□ -0.8
CKS1BP1-201ENST00000555221 PBXIP1Q96AQ6 731 aa10.04□□□□□ -0.8
CKS1BP1-201ENST00000555221 UCN2Q96RP3 112 aa10.04□□□□□ -0.8
CKS1BP1-201ENST00000555221 PDIA4P13667 645 aaKnown RBP10.03□□□□□ -0.8
CKS1BP1-201ENST00000555221 GGCXP38435 758 aa10.02□□□□□ -0.81
CKS1BP1-201ENST00000555221 SH3BP5LQ7L8J4 393 aa10.02□□□□□ -0.81
CKS1BP1-201ENST00000555221 ZBTB33Q86T24 672 aa10.02□□□□□ -0.81
CKS1BP1-201ENST00000555221 NFATC2IPQ8NCF5 419 aa10.02□□□□□ -0.81
CKS1BP1-201ENST00000555221 TFIP11Q9UBB9 837 aaKnown RBP10.02□□□□□ -0.81
CKS1BP1-201ENST00000555221 RFX1P22670 979 aa10.01□□□□□ -0.81
CKS1BP1-201ENST00000555221 LMOD1P29536 600 aaPredicted RBP10.01□□□□□ -0.81
CKS1BP1-201ENST00000555221 SPNS2Q8IVW8 549 aa10.01□□□□□ -0.81
CKS1BP1-201ENST00000555221 ADAM32Q8TC27 787 aa10.01□□□□□ -0.81
CKS1BP1-201ENST00000555221 PCDHB9Q9Y5E1 797 aa10.01□□□□□ -0.81
CKS1BP1-201ENST00000555221 ATP9BO43861 1147 aa10□□□□□ -0.81
CKS1BP1-201ENST00000555221 BPHLQ86WA6 291 aaPredicted RBP10□□□□□ -0.81
CKS1BP1-201ENST00000555221 OCSTAMPQ9BR26 566 aa10□□□□□ -0.81
CKS1BP1-201ENST00000555221 MAFBQ9Y5Q3 323 aaPredicted RBP10□□□□□ -0.81
CKS1BP1-201ENST00000555221 PDE4CQ08493 712 aa9.99□□□□□ -0.81
CKS1BP1-201ENST00000555221 TBC1D9Q6ZT07 1266 aa9.99□□□□□ -0.81
CKS1BP1-201ENST00000555221 ZNF511Q8NB15 262 aa9.99□□□□□ -0.81
CKS1BP1-201ENST00000555221 BAP1Q92560 729 aa9.99□□□□□ -0.81
CKS1BP1-201ENST00000555221 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.98□□□□□ -0.81
CKS1BP1-201ENST00000555221 ZBTB24O43167 697 aaPredicted RBP9.98□□□□□ -0.81
CKS1BP1-201ENST00000555221 AGERQ15109 404 aa9.98□□□□□ -0.81
CKS1BP1-201ENST00000555221 SLFNL1Q499Z3 407 aa9.98□□□□□ -0.81
CKS1BP1-201ENST00000555221 SH3RF1Q7Z6J0 888 aa9.98□□□□□ -0.81
CKS1BP1-201ENST00000555221 MAGEB6P1A0A0J9YX57 407 aa9.97□□□□□ -0.81
CKS1BP1-201ENST00000555221 DZIP3Q86Y13 1208 aaKnown RBP9.97□□□□□ -0.81
CKS1BP1-201ENST00000555221 ANKLE1Q8NAG6 615 aa9.97□□□□□ -0.81
CKS1BP1-201ENST00000555221 CEP126Q9P2H0 1117 aa9.97□□□□□ -0.81
CKS1BP1-201ENST00000555221 RNF223E7ERA6 249 aa9.96□□□□□ -0.82
CKS1BP1-201ENST00000555221 SRPK2P78362 688 aaKnown RBP9.96□□□□□ -0.82
CKS1BP1-201ENST00000555221 LINC01559Q495D7 138 aa9.96□□□□□ -0.82
CKS1BP1-201ENST00000555221 RETREG2Q8NC44 543 aa9.96□□□□□ -0.82
CKS1BP1-201ENST00000555221 CARD14Q9BXL6 1004 aa9.96□□□□□ -0.82
CKS1BP1-201ENST00000555221 PIK3CDO00329 1044 aa9.95□□□□□ -0.82
CKS1BP1-201ENST00000555221 PPEF1O14829 653 aaPredicted RBP9.95□□□□□ -0.82
CKS1BP1-201ENST00000555221 SKIP12755 728 aa9.95□□□□□ -0.82
CKS1BP1-201ENST00000555221 RNF135Q8IUD6 432 aa9.95□□□□□ -0.82
CKS1BP1-201ENST00000555221 TRAIPQ9BWF2 469 aa9.95□□□□□ -0.82
CKS1BP1-201ENST00000555221 PLEKHM2Q8IWE5 1019 aa9.94□□□□□ -0.82
CKS1BP1-201ENST00000555221 FOXJ1Q92949 421 aa9.94□□□□□ -0.82
CKS1BP1-201ENST00000555221 USP17L5A8MUK1 530 aa9.93□□□□□ -0.82
CKS1BP1-201ENST00000555221 LZTS3O60299 673 aaPredicted RBP9.93□□□□□ -0.82
CKS1BP1-201ENST00000555221 SH3BP2P78314 561 aa9.93□□□□□ -0.82
CKS1BP1-201ENST00000555221 ERFEQ4G0M1 354 aa9.93□□□□□ -0.82
CKS1BP1-201ENST00000555221 SLC10A4Q96EP9 437 aa9.93□□□□□ -0.82
CKS1BP1-201ENST00000555221 USP17L3A6NCW0 530 aa9.92□□□□□ -0.82
CKS1BP1-201ENST00000555221 USP17L4A6NCW7 530 aa9.92□□□□□ -0.82
CKS1BP1-201ENST00000555221 CSB-PGBD3P0DP91 1061 aa9.92□□□□□ -0.82
CKS1BP1-201ENST00000555221 TRIM32Q13049 653 aa9.92□□□□□ -0.82
CKS1BP1-201ENST00000555221 MAP7D1Q3KQU3 841 aa9.92□□□□□ -0.82
CKS1BP1-201ENST00000555221 USP17L2Q6R6M4 530 aa9.92□□□□□ -0.82
CKS1BP1-201ENST00000555221 USP17L1Q7RTZ2 530 aa9.92□□□□□ -0.82
CKS1BP1-201ENST00000555221 FAM174AQ8TBP5 190 aa9.92□□□□□ -0.82
CKS1BP1-201ENST00000555221 VRTNQ9H8Y1 702 aa9.92□□□□□ -0.82
CKS1BP1-201ENST00000555221 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.92□□□□□ -0.82
CKS1BP1-201ENST00000555221 ATG7O95352 703 aa9.91□□□□□ -0.82
CKS1BP1-201ENST00000555221 RPIAP49247 311 aa9.91□□□□□ -0.82
CKS1BP1-201ENST00000555221 NBPF20Q3BBV1 942 aa9.91□□□□□ -0.82
CKS1BP1-201ENST00000555221 PPP1R18Q6NYC8 613 aa9.91□□□□□ -0.82
CKS1BP1-201ENST00000555221 PHTF2Q8N3S3 785 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms