RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 FAM196AQ6ZSG2 479 aa21.9■■□□□ 1.1
VPS29-209ENST00000551655 PARD3Q8TEW0 1356 aa21.89■■□□□ 1.1
VPS29-209ENST00000551655 SPATA31A1Q5TZJ5 1347 aa21.88■■□□□ 1.09
VPS29-209ENST00000551655 SLC4A1APQ9BWU0 796 aaKnown RBP21.88■■□□□ 1.09
VPS29-209ENST00000551655 SPON1Q9HCB6 807 aa21.88■■□□□ 1.09
VPS29-209ENST00000551655 NINLQ9Y2I6 1382 aa21.87■■□□□ 1.09
VPS29-209ENST00000551655 SPATA31E1Q6ZUB1 1445 aa21.87■■□□□ 1.09
VPS29-209ENST00000551655 DCAF8L1A6NGE4 600 aa21.86■■□□□ 1.09
VPS29-209ENST00000551655 KCNQ2O43526 872 aa21.86■■□□□ 1.09
VPS29-209ENST00000551655 NBPF8Q3BBV2 869 aa21.85■■□□□ 1.09
VPS29-209ENST00000551655 NBPF14Q5TI25 921 aa21.85■■□□□ 1.09
VPS29-209ENST00000551655 PRDM11Q9NQV5 511 aa21.85■■□□□ 1.09
VPS29-209ENST00000551655 STRN4Q9NRL3 753 aa21.85■■□□□ 1.09
VPS29-209ENST00000551655 SENP3-EIF4A1A0A087X0R7 540 aa21.84■■□□□ 1.09
VPS29-209ENST00000551655 CHRNA2Q15822 529 aa21.84■■□□□ 1.09
VPS29-209ENST00000551655 ZNF784Q8NCA9 323 aaPredicted RBP21.84■■□□□ 1.09
VPS29-209ENST00000551655 PRAM1Q96QH2 718 aa21.84■■□□□ 1.09
VPS29-209ENST00000551655 USP35Q9P2H5 1018 aa21.84■■□□□ 1.09
VPS29-209ENST00000551655 ANKRD30BQ9BXX2 1392 aa21.84■■□□□ 1.09
VPS29-209ENST00000551655 UTRNP46939 3433 aa21.84■■□□□ 1.09
VPS29-209ENST00000551655 ANKARQ7Z5J8 1434 aa21.82■■□□□ 1.08
VPS29-209ENST00000551655 SIRT1Q96EB6 747 aa21.82■■□□□ 1.08
VPS29-209ENST00000551655 NRKQ7Z2Y5 1582 aa21.82■■□□□ 1.08
VPS29-209ENST00000551655 KIAA0232Q92628 1395 aa21.81■■□□□ 1.08
VPS29-209ENST00000551655 ACIN1Q9UKV3 1341 aaKnown RBP21.8■■□□□ 1.08
VPS29-209ENST00000551655 PRR36Q9H6K5 1346 aa21.8■■□□□ 1.08
VPS29-209ENST00000551655 GPRASP1Q5JY77 1395 aa21.79■■□□□ 1.08
VPS29-209ENST00000551655 HIRIP3Q9BW71 556 aaPredicted RBP21.79■■□□□ 1.08
VPS29-209ENST00000551655 PHRF1Q9P1Y6 1649 aaKnown RBP21.79■■□□□ 1.08
VPS29-209ENST00000551655 PAK3O75914 559 aaPredicted RBP21.78■■□□□ 1.08
VPS29-209ENST00000551655 CFAP70Q5T0N1 1121 aa21.78■■□□□ 1.08
VPS29-209ENST00000551655 CASZ1Q86V15 1759 aa21.78■■□□□ 1.08
VPS29-209ENST00000551655 MYOM1P52179 1685 aa21.78■■□□□ 1.08
VPS29-209ENST00000551655 PDE3BQ13370 1112 aa21.77■■□□□ 1.08
VPS29-209ENST00000551655 IFFO2Q5TF58 517 aa21.77■■□□□ 1.08
VPS29-209ENST00000551655 PDGFDQ9GZP0 370 aaPredicted RBP21.77■■□□□ 1.08
VPS29-209ENST00000551655 C14orf93Q9H972 538 aaKnown RBP21.77■■□□□ 1.08
VPS29-209ENST00000551655 DHX57Q6P158 1386 aaKnown RBP21.75■■□□□ 1.07
VPS29-209ENST00000551655 ANO8Q9HCE9 1232 aaPredicted RBP21.75■■□□□ 1.07
VPS29-209ENST00000551655 ZC3H6P61129 1189 aaKnown RBP21.74■■□□□ 1.07
VPS29-209ENST00000551655 POGKQ9P215 609 aa21.74■■□□□ 1.07
VPS29-209ENST00000551655 SSH2Q76I76 1423 aa21.73■■□□□ 1.07
VPS29-209ENST00000551655 NUTM2GQ5VZR2 741 aa21.72■■□□□ 1.07
VPS29-209ENST00000551655 TULP4Q9NRJ4 1543 aa21.71■■□□□ 1.07
VPS29-209ENST00000551655 ZBTB7AO95365 584 aa21.71■■□□□ 1.07
VPS29-209ENST00000551655 C1QTNF8P60827 252 aa21.71■■□□□ 1.07
VPS29-209ENST00000551655 LARP1Q6PKG0 1096 aaKnown RBP21.71■■□□□ 1.07
VPS29-209ENST00000551655 BARGINQ6ZT62 677 aa21.71■■□□□ 1.07
VPS29-209ENST00000551655 MINK1Q8N4C8 1332 aaPredicted RBP21.71■■□□□ 1.07
VPS29-209ENST00000551655 DLC1Q96QB1 1528 aa21.7■■□□□ 1.07
VPS29-209ENST00000551655 NGDNQ8NEJ9 315 aaKnown RBP21.7■■□□□ 1.06
VPS29-209ENST00000551655 EVA1CP58658 441 aa21.68■■□□□ 1.06
VPS29-209ENST00000551655 RGPD3A6NKT7 1758 aaPredicted RBP21.67■■□□□ 1.06
VPS29-209ENST00000551655 RGPD4Q7Z3J3 1758 aa21.67■■□□□ 1.06
VPS29-209ENST00000551655 PEAK1Q9H792 1746 aa21.67■■□□□ 1.06
VPS29-209ENST00000551655 PARP4Q9UKK3 1724 aaKnown RBP21.67■■□□□ 1.06
VPS29-209ENST00000551655 PTF1AQ7RTS3 328 aa21.67■■□□□ 1.06
VPS29-209ENST00000551655 ATF5Q9Y2D1 282 aaPredicted RBP21.67■■□□□ 1.06
VPS29-209ENST00000551655 CHD4Q14839 1912 aa21.67■■□□□ 1.06
VPS29-209ENST00000551655 SBF2Q86WG5 1849 aa21.66■■□□□ 1.06
VPS29-209ENST00000551655 PTGER2P43116 358 aa21.66■■□□□ 1.06
VPS29-209ENST00000551655 TCP11L2Q8N4U5 519 aa21.66■■□□□ 1.06
VPS29-209ENST00000551655 TRAK1Q9UPV9 953 aa21.65■■□□□ 1.06
VPS29-209ENST00000551655 LMO7Q8WWI1 1683 aa21.65■■□□□ 1.06
VPS29-209ENST00000551655 FHDC1Q9C0D6 1143 aaPredicted RBP21.64■■□□□ 1.05
VPS29-209ENST00000551655 ADGRB1O14514 1584 aa21.64■■□□□ 1.05
VPS29-209ENST00000551655 CEP350Q5VT06 3117 aa21.64■■□□□ 1.05
VPS29-209ENST00000551655 WASLO00401 505 aaPredicted RBP21.62■■□□□ 1.05
VPS29-209ENST00000551655 EIF3AQ14152 1382 aaKnown RBP21.61■■□□□ 1.05
VPS29-209ENST00000551655 POTEDQ86YR6 584 aa21.61■■□□□ 1.05
VPS29-209ENST00000551655 SYT17Q9BSW7 474 aa21.61■■□□□ 1.05
VPS29-209ENST00000551655 ITSN1Q15811 1721 aa21.6■■□□□ 1.05
VPS29-209ENST00000551655 ATP7BP35670 1465 aa21.6■■□□□ 1.05
VPS29-209ENST00000551655 LRRC37A3O60309 1634 aa21.6■■□□□ 1.05
VPS29-209ENST00000551655 BCL11BQ9C0K0 894 aaPredicted RBP21.6■■□□□ 1.05
VPS29-209ENST00000551655 OVOS2A0A0G2JMS6 1433 aa21.6■■□□□ 1.05
VPS29-209ENST00000551655 OVOS2A0A0J9YW53 1432 aa21.6■■□□□ 1.05
VPS29-209ENST00000551655 OVOS2Q6IE36 1432 aa21.6■■□□□ 1.05
VPS29-209ENST00000551655 PROM2Q8N271 834 aa21.59■■□□□ 1.05
VPS29-209ENST00000551655 MPHOSPH9Q99550 1183 aa21.59■■□□□ 1.05
VPS29-209ENST00000551655 PLSCR1O15162 318 aa21.58■■□□□ 1.05
VPS29-209ENST00000551655 COL5A2P05997 1499 aaPredicted RBP21.56■■□□□ 1.04
VPS29-209ENST00000551655 THRAP3Q9Y2W1 955 aaKnown RBP21.55■■□□□ 1.04
VPS29-209ENST00000551655 NUDT16Q96DE0 195 aaKnown RBP21.54■■□□□ 1.04
VPS29-209ENST00000551655 CPDO75976 1380 aa21.53■■□□□ 1.04
VPS29-209ENST00000551655 SGIP1Q9BQI5 828 aa21.52■■□□□ 1.04
VPS29-209ENST00000551655 TOPAZ1Q8N9V7 1692 aa21.51■■□□□ 1.03
VPS29-209ENST00000551655 WNK3Q9BYP7 1800 aa21.5■■□□□ 1.03
VPS29-209ENST00000551655 CRB1P82279 1406 aa21.5■■□□□ 1.03
VPS29-209ENST00000551655 ZBTB7CA1YPR0 619 aa21.5■■□□□ 1.03
VPS29-209ENST00000551655 GIGYF1O75420 1035 aaPredicted RBP21.5■■□□□ 1.03
VPS29-209ENST00000551655 STK32BQ9NY57 414 aa21.5■■□□□ 1.03
VPS29-209ENST00000551655 USP19O94966 1318 aa21.5■■□□□ 1.03
VPS29-209ENST00000551655 ACEP12821 1306 aa21.5■■□□□ 1.03
VPS29-209ENST00000551655 ARHGEF28Q8N1W1 1705 aaKnown RBP21.49■■□□□ 1.03
VPS29-209ENST00000551655 DDB1Q16531 1140 aa21.49■■□□□ 1.03
VPS29-209ENST00000551655 ABTB2Q8N961 1025 aa21.49■■□□□ 1.03
VPS29-209ENST00000551655 GOLGB1Q14789 3259 aaKnown RBP21.49■■□□□ 1.03
VPS29-209ENST00000551655 AKAP12Q02952 1782 aa21.48■■□□□ 1.03
VPS29-209ENST00000551655 C11orf95C9JLR9 678 aaPredicted RBP21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms