RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 COL14A1Q05707 1796 aaKnown RBP24.92■■□□□ 1.58
VPS29-204ENST00000548259 ADGRB2O60241 1585 aa24.92■■□□□ 1.58
VPS29-204ENST00000548259 WASLO00401 505 aaPredicted RBP24.91■■□□□ 1.58
VPS29-204ENST00000548259 R3HDM1Q15032 1099 aaKnown RBP24.9■■□□□ 1.58
VPS29-204ENST00000548259 FAM196AQ6ZSG2 479 aa24.89■■□□□ 1.58
VPS29-204ENST00000548259 DISP2A7MBM2 1401 aa24.88■■□□□ 1.57
VPS29-204ENST00000548259 TULP4Q9NRJ4 1543 aa24.88■■□□□ 1.57
VPS29-204ENST00000548259 FAM182BQ5T319 152 aa24.88■■□□□ 1.57
VPS29-204ENST00000548259 STAC3Q96MF2 364 aa24.88■■□□□ 1.57
VPS29-204ENST00000548259 NRAPQ86VF7 1730 aa24.88■■□□□ 1.57
VPS29-204ENST00000548259 PRR36Q9H6K5 1346 aa24.86■■□□□ 1.57
VPS29-204ENST00000548259 RGPD1P0DJD0 1748 aa24.86■■□□□ 1.57
VPS29-204ENST00000548259 TRPM3Q9HCF6 1732 aaPredicted RBP24.85■■□□□ 1.57
VPS29-204ENST00000548259 SPATA31A1Q5TZJ5 1347 aa24.84■■□□□ 1.57
VPS29-204ENST00000548259 PARD3Q8TEW0 1356 aa24.83■■□□□ 1.57
VPS29-204ENST00000548259 ALS2Q96Q42 1657 aa24.83■■□□□ 1.57
VPS29-204ENST00000548259 EZH2Q15910 746 aaKnown RBP24.83■■□□□ 1.57
VPS29-204ENST00000548259 STRN4Q9NRL3 753 aa24.83■■□□□ 1.57
VPS29-204ENST00000548259 KDM2AQ9Y2K7 1162 aa24.83■■□□□ 1.57
VPS29-204ENST00000548259 ADGRB1O14514 1584 aa24.83■■□□□ 1.57
VPS29-204ENST00000548259 TRIM37O94972 964 aa24.82■■□□□ 1.56
VPS29-204ENST00000548259 EVA1CP58658 441 aa24.82■■□□□ 1.56
VPS29-204ENST00000548259 DCAF11Q8TEB1 546 aa24.82■■□□□ 1.56
VPS29-204ENST00000548259 KIAA0232Q92628 1395 aa24.81■■□□□ 1.56
VPS29-204ENST00000548259 APBA3O96018 575 aa24.81■■□□□ 1.56
VPS29-204ENST00000548259 PDE3BQ13370 1112 aa24.81■■□□□ 1.56
VPS29-204ENST00000548259 CHRNA2Q15822 529 aa24.79■■□□□ 1.56
VPS29-204ENST00000548259 NUDT16Q96DE0 195 aaKnown RBP24.79■■□□□ 1.56
VPS29-204ENST00000548259 CAMKK2Q96RR4 588 aa24.79■■□□□ 1.56
VPS29-204ENST00000548259 THSD7AQ9UPZ6 1657 aa24.78■■□□□ 1.56
VPS29-204ENST00000548259 NBPF8Q3BBV2 869 aa24.78■■□□□ 1.56
VPS29-204ENST00000548259 NBPF14Q5TI25 921 aa24.78■■□□□ 1.56
VPS29-204ENST00000548259 ATP7BP35670 1465 aa24.77■■□□□ 1.56
VPS29-204ENST00000548259 ZC3H6P61129 1189 aaKnown RBP24.77■■□□□ 1.56
VPS29-204ENST00000548259 BARGINQ6ZT62 677 aa24.76■■□□□ 1.55
VPS29-204ENST00000548259 USP35Q9P2H5 1018 aa24.76■■□□□ 1.55
VPS29-204ENST00000548259 C11orf95C9JLR9 678 aaPredicted RBP24.73■■□□□ 1.55
VPS29-204ENST00000548259 RAB3GAP2Q9H2M9 1393 aa24.72■■□□□ 1.55
VPS29-204ENST00000548259 DCAF8L1A6NGE4 600 aa24.72■■□□□ 1.55
VPS29-204ENST00000548259 NUTM2GQ5VZR2 741 aa24.72■■□□□ 1.55
VPS29-204ENST00000548259 CCDC61Q9Y6R9 512 aa24.72■■□□□ 1.55
VPS29-204ENST00000548259 TCP11L2Q8N4U5 519 aa24.71■■□□□ 1.55
VPS29-204ENST00000548259 CDK19Q9BWU1 502 aa24.71■■□□□ 1.55
VPS29-204ENST00000548259 TNS1Q9HBL0 1735 aaKnown RBP24.71■■□□□ 1.55
VPS29-204ENST00000548259 ABTB2Q8N961 1025 aa24.7■■□□□ 1.54
VPS29-204ENST00000548259 THRAP3Q9Y2W1 955 aaKnown RBP24.7■■□□□ 1.54
VPS29-204ENST00000548259 SSH2Q76I76 1423 aa24.69■■□□□ 1.54
VPS29-204ENST00000548259 ITSN1Q15811 1721 aa24.69■■□□□ 1.54
VPS29-204ENST00000548259 CRYBG1Q9Y4K1 1723 aa24.69■■□□□ 1.54
VPS29-204ENST00000548259 ACEP12821 1306 aa24.68■■□□□ 1.54
VPS29-204ENST00000548259 PPP1R1BQ9UD71 204 aaPredicted RBP24.68■■□□□ 1.54
VPS29-204ENST00000548259 POLR3AO14802 1390 aaPredicted RBP24.67■■□□□ 1.54
VPS29-204ENST00000548259 LARP1Q6PKG0 1096 aaKnown RBP24.66■■□□□ 1.54
VPS29-204ENST00000548259 NLRP13Q86W25 1043 aa24.66■■□□□ 1.54
VPS29-204ENST00000548259 CPDO75976 1380 aa24.66■■□□□ 1.54
VPS29-204ENST00000548259 PLEKHG3A1L390 1219 aa24.65■■□□□ 1.54
VPS29-204ENST00000548259 YY1P25490 414 aa24.65■■□□□ 1.54
VPS29-204ENST00000548259 SPON1Q9HCB6 807 aa24.65■■□□□ 1.54
VPS29-204ENST00000548259 PHRF1Q9P1Y6 1649 aaKnown RBP24.64■■□□□ 1.53
VPS29-204ENST00000548259 GCP02774 474 aa24.6■■□□□ 1.53
VPS29-204ENST00000548259 USP19O94966 1318 aa24.6■■□□□ 1.53
VPS29-204ENST00000548259 KCNQ2O43526 872 aa24.59■■□□□ 1.53
VPS29-204ENST00000548259 SRPK2P78362 688 aaKnown RBP24.59■■□□□ 1.53
VPS29-204ENST00000548259 CAMTA1Q9Y6Y1 1673 aa24.59■■□□□ 1.53
VPS29-204ENST00000548259 ARHGEF28Q8N1W1 1705 aaKnown RBP24.58■■□□□ 1.53
VPS29-204ENST00000548259 BRD4O60885 1362 aaPredicted RBP24.58■■□□□ 1.53
VPS29-204ENST00000548259 NINLQ9Y2I6 1382 aa24.55■■□□□ 1.52
VPS29-204ENST00000548259 NRKQ7Z2Y5 1582 aa24.55■■□□□ 1.52
VPS29-204ENST00000548259 OVOS2A0A0G2JMS6 1433 aa24.55■■□□□ 1.52
VPS29-204ENST00000548259 OVOS2A0A0J9YW53 1432 aa24.55■■□□□ 1.52
VPS29-204ENST00000548259 OVOS2Q6IE36 1432 aa24.55■■□□□ 1.52
VPS29-204ENST00000548259 CRB1P82279 1406 aa24.54■■□□□ 1.52
VPS29-204ENST00000548259 RREB1Q92766 1687 aa24.53■■□□□ 1.52
VPS29-204ENST00000548259 ZBTB7CA1YPR0 619 aa24.53■■□□□ 1.52
VPS29-204ENST00000548259 COL5A2P05997 1499 aaPredicted RBP24.52■■□□□ 1.52
VPS29-204ENST00000548259 PLSCR1O15162 318 aa24.52■■□□□ 1.52
VPS29-204ENST00000548259 DDB1Q16531 1140 aa24.52■■□□□ 1.52
VPS29-204ENST00000548259 PPIP5K1Q6PFW1 1433 aa24.52■■□□□ 1.52
VPS29-204ENST00000548259 TOPAZ1Q8N9V7 1692 aa24.5■■□□□ 1.51
VPS29-204ENST00000548259 LMO7Q8WWI1 1683 aa24.5■■□□□ 1.51
VPS29-204ENST00000548259 NUP188Q5SRE5 1749 aa24.5■■□□□ 1.51
VPS29-204ENST00000548259 NLRP6P59044 892 aa24.5■■□□□ 1.51
VPS29-204ENST00000548259 TOM1L2Q6ZVM7 507 aa24.5■■□□□ 1.51
VPS29-204ENST00000548259 CDCA7Q9BWT1 371 aaPredicted RBP24.49■■□□□ 1.51
VPS29-204ENST00000548259 CENPJQ9HC77 1338 aaPredicted RBP24.49■■□□□ 1.51
VPS29-204ENST00000548259 AATKQ6ZMQ8 1374 aa24.49■■□□□ 1.51
VPS29-204ENST00000548259 BCL11BQ9C0K0 894 aaPredicted RBP24.48■■□□□ 1.51
VPS29-204ENST00000548259 CABP2Q9NPB3 220 aa24.47■■□□□ 1.51
VPS29-204ENST00000548259 PARP4Q9UKK3 1724 aaKnown RBP24.46■■□□□ 1.51
VPS29-204ENST00000548259 CABP1Q9NZU7 370 aa24.44■■□□□ 1.5
VPS29-204ENST00000548259 NBPF1Q3BBV0 1214 aa24.43■■□□□ 1.5
VPS29-204ENST00000548259 KIAA1210Q9ULL0 1709 aa24.43■■□□□ 1.5
VPS29-204ENST00000548259 USP6P35125 1406 aa24.42■■□□□ 1.5
VPS29-204ENST00000548259 WDR17Q8IZU2 1322 aa24.41■■□□□ 1.5
VPS29-204ENST00000548259 KCNH5Q8NCM2 988 aa24.41■■□□□ 1.5
VPS29-204ENST00000548259 CSB-PGBD3P0DP91 1061 aa24.4■■□□□ 1.5
VPS29-204ENST00000548259 STK32BQ9NY57 414 aa24.39■■□□□ 1.49
VPS29-204ENST00000548259 ANO8Q9HCE9 1232 aaPredicted RBP24.38■■□□□ 1.49
VPS29-204ENST00000548259 RGPD3A6NKT7 1758 aaPredicted RBP24.38■■□□□ 1.49
VPS29-204ENST00000548259 RGPD4Q7Z3J3 1758 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms