RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 CDK5RAP3Q96JB5 506 aa22.95■■□□□ 1.26
HDAC4-215ENST00000543185 NEFHP12036 1026 aa22.95■■□□□ 1.26
HDAC4-215ENST00000543185 TNMDQ9H2S6 317 aa22.95■■□□□ 1.26
HDAC4-215ENST00000543185 CFAP45Q9UL16 551 aa22.95■■□□□ 1.26
HDAC4-215ENST00000543185 KANK4Q5T7N3 995 aaPredicted RBP22.95■■□□□ 1.26
HDAC4-215ENST00000543185 KRI1Q8N9T8 703 aaKnown RBP22.95■■□□□ 1.26
HDAC4-215ENST00000543185 RNF214Q8ND24 703 aa22.95■■□□□ 1.26
HDAC4-215ENST00000543185 SERPINC1P01008 464 aa22.94■■□□□ 1.26
HDAC4-215ENST00000543185 ERC1Q8IUD2 1116 aa22.94■■□□□ 1.26
HDAC4-215ENST00000543185 RRBP1Q9P2E9 1410 aaKnown RBP22.94■■□□□ 1.26
HDAC4-215ENST00000543185 MICALCLQ6ZW33 695 aa22.94■■□□□ 1.26
HDAC4-215ENST00000543185 FBXW7Q969H0 707 aa22.94■■□□□ 1.26
HDAC4-215ENST00000543185 RBM33Q96EV2 1170 aaKnown RBP22.93■■□□□ 1.26
HDAC4-215ENST00000543185 ZSCAN30Q86W11 494 aa22.93■■□□□ 1.26
HDAC4-215ENST00000543185 PDS5BQ9NTI5 1447 aa22.93■■□□□ 1.26
HDAC4-215ENST00000543185 CCDC91Q7Z6B0 441 aa22.93■■□□□ 1.26
HDAC4-215ENST00000543185 KRT85P78386 507 aa22.93■■□□□ 1.26
HDAC4-215ENST00000543185 LUZP1Q86V48 1076 aa22.92■■□□□ 1.26
HDAC4-215ENST00000543185 GCC1Q96CN9 775 aa22.92■■□□□ 1.26
HDAC4-215ENST00000543185 FKBP5Q13451 457 aaPredicted RBP22.92■■□□□ 1.26
HDAC4-215ENST00000543185 DIAPH1O60610 1272 aaKnown RBP22.91■■□□□ 1.26
HDAC4-215ENST00000543185 PLEKHH1Q9ULM0 1364 aa22.91■■□□□ 1.26
HDAC4-215ENST00000543185 BRPF3Q9ULD4 1205 aa22.91■■□□□ 1.26
HDAC4-215ENST00000543185 CEP57L1Q8IYX8 460 aa22.91■■□□□ 1.26
HDAC4-215ENST00000543185 VGFO15240 615 aaPredicted RBP22.91■■□□□ 1.26
HDAC4-215ENST00000543185 TTLL5Q6EMB2 1281 aa22.91■■□□□ 1.26
HDAC4-215ENST00000543185 POLR3GO15318 223 aaPredicted RBP22.9■■□□□ 1.26
HDAC4-215ENST00000543185 DESP17661 470 aa22.9■■□□□ 1.26
HDAC4-215ENST00000543185 FEZ1Q99689 392 aa22.9■■□□□ 1.26
HDAC4-215ENST00000543185 CRACR2AQ9BSW2 395 aa22.9■■□□□ 1.26
HDAC4-215ENST00000543185 CDKL5O76039 1030 aa22.9■■□□□ 1.26
HDAC4-215ENST00000543185 CGNQ9P2M7 1197 aaKnown RBP22.89■■□□□ 1.26
HDAC4-215ENST00000543185 WASHC2CQ9Y4E1 1318 aa22.89■■□□□ 1.26
HDAC4-215ENST00000543185 PDCL3Q9H2J4 239 aa22.89■■□□□ 1.26
HDAC4-215ENST00000543185 RIPK4P57078 832 aa22.89■■□□□ 1.25
HDAC4-215ENST00000543185 WASHC2AQ641Q2 1341 aa22.89■■□□□ 1.25
HDAC4-215ENST00000543185 CCDC148Q8NFR7 591 aa22.89■■□□□ 1.25
HDAC4-215ENST00000543185 PDE3AQ14432 1141 aa22.89■■□□□ 1.25
HDAC4-215ENST00000543185 SPATA24Q86W54 205 aa22.89■■□□□ 1.25
HDAC4-215ENST00000543185 SMTNL1A8MU46 457 aa22.88■■□□□ 1.25
HDAC4-215ENST00000543185 PRPF40AO75400 957 aaKnown RBP22.88■■□□□ 1.25
HDAC4-215ENST00000543185 TMCO3Q6UWJ1 677 aa22.88■■□□□ 1.25
HDAC4-215ENST00000543185 MCM5P33992 734 aa22.88■■□□□ 1.25
HDAC4-215ENST00000543185 LNPKQ9C0E8 428 aa22.88■■□□□ 1.25
HDAC4-215ENST00000543185 POLA1P09884 1462 aaPredicted RBP22.87■■□□□ 1.25
HDAC4-215ENST00000543185 POTEB2H3BUK9 544 aa22.87■■□□□ 1.25
HDAC4-215ENST00000543185 STK38Q15208 465 aa22.87■■□□□ 1.25
HDAC4-215ENST00000543185 UBXN4Q92575 508 aa22.87■■□□□ 1.25
HDAC4-215ENST00000543185 ZSCAN12O43309 604 aa22.87■■□□□ 1.25
HDAC4-215ENST00000543185 GNAI3P08754 354 aa22.87■■□□□ 1.25
HDAC4-215ENST00000543185 MYOM3Q5VTT5 1437 aa22.87■■□□□ 1.25
HDAC4-215ENST00000543185 IMMTQ16891 758 aaKnown RBP22.87■■□□□ 1.25
HDAC4-215ENST00000543185 SMARCA4P51532 1647 aa22.87■■□□□ 1.25
HDAC4-215ENST00000543185 UBTFL1P0CB47 393 aaPredicted RBP22.86■■□□□ 1.25
HDAC4-215ENST00000543185 KIF3BO15066 747 aa22.86■■□□□ 1.25
HDAC4-215ENST00000543185 SRCIN1Q9C0H9 1055 aa22.86■■□□□ 1.25
HDAC4-215ENST00000543185 SPC24Q8NBT2 197 aa22.86■■□□□ 1.25
HDAC4-215ENST00000543185 K7ELQ4 463 aaPredicted RBP22.85■■□□□ 1.25
HDAC4-215ENST00000543185 CENPHQ9H3R5 247 aa22.85■■□□□ 1.25
HDAC4-215ENST00000543185 KIF18AQ8NI77 898 aa22.85■■□□□ 1.25
HDAC4-215ENST00000543185 CCDC102AQ96A19 550 aa22.85■■□□□ 1.25
HDAC4-215ENST00000543185 FBXO3Q9UK99 471 aa22.85■■□□□ 1.25
HDAC4-215ENST00000543185 WWC2Q6AWC2 1192 aa22.85■■□□□ 1.25
HDAC4-215ENST00000543185 TBC1D2BQ9UPU7 963 aa22.85■■□□□ 1.25
HDAC4-215ENST00000543185 TRIM22Q8IYM9 498 aa22.85■■□□□ 1.25
HDAC4-215ENST00000543185 JAKMIP3Q5VZ66 844 aa22.84■■□□□ 1.25
HDAC4-215ENST00000543185 ZNF397Q8NF99 534 aaPredicted RBP22.84■■□□□ 1.25
HDAC4-215ENST00000543185 RBM10P98175 930 aaKnown RBP22.84■■□□□ 1.25
HDAC4-215ENST00000543185 APAF1O14727 1248 aa22.84■■□□□ 1.25
HDAC4-215ENST00000543185 NEK4P51957 841 aa22.84■■□□□ 1.25
HDAC4-215ENST00000543185 FIBPO43427 364 aa22.83■■□□□ 1.25
HDAC4-215ENST00000543185 FYCO1Q9BQS8 1478 aa22.82■■□□□ 1.24
HDAC4-215ENST00000543185 CYP46A1Q9Y6A2 500 aa22.82■■□□□ 1.24
HDAC4-215ENST00000543185 IL27Q8NEV9 243 aa22.82■■□□□ 1.24
HDAC4-215ENST00000543185 NEMFO60524 1076 aa22.82■■□□□ 1.24
HDAC4-215ENST00000543185 FHOD3Q2V2M9 1422 aa22.82■■□□□ 1.24
HDAC4-215ENST00000543185 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.81■■□□□ 1.24
HDAC4-215ENST00000543185 ME1P48163 572 aa22.81■■□□□ 1.24
HDAC4-215ENST00000543185 CCDC9Q9Y3X0 531 aaKnown RBP22.81■■□□□ 1.24
HDAC4-215ENST00000543185 NF2P35240 595 aa22.81■■□□□ 1.24
HDAC4-215ENST00000543185 RAD21O60216 631 aa22.81■■□□□ 1.24
HDAC4-215ENST00000543185 FILIP1Q7Z7B0 1213 aa22.81■■□□□ 1.24
HDAC4-215ENST00000543185 ARHGAP29Q52LW3 1261 aa22.81■■□□□ 1.24
HDAC4-215ENST00000543185 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.81■■□□□ 1.242e-6■■■■□ 24.5
HDAC4-215ENST00000543185 EPB41L2O43491 1005 aaKnown RBP22.8■■□□□ 1.24
HDAC4-215ENST00000543185 PPM1EQ8WY54 764 aa22.8■■□□□ 1.24
HDAC4-215ENST00000543185 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.8■■□□□ 1.245e-6■■■■■ 34.6
HDAC4-215ENST00000543185 FSD1Q9BTV5 496 aa22.8■■□□□ 1.24
HDAC4-215ENST00000543185 STAMBPO95630 424 aa22.79■■□□□ 1.24
HDAC4-215ENST00000543185 CAVIN2O95810 425 aa22.79■■□□□ 1.24
HDAC4-215ENST00000543185 SFPQP23246 707 aaKnown RBP eCLIP22.79■■□□□ 1.242e-6■■■□□ 18.5
HDAC4-215ENST00000543185 SMG6Q86US8 1419 aaKnown RBP22.79■■□□□ 1.24
HDAC4-215ENST00000543185 TAX1BP1Q86VP1 789 aa22.78■■□□□ 1.24
HDAC4-215ENST00000543185 MROH2BQ7Z745 1585 aa22.78■■□□□ 1.24
HDAC4-215ENST00000543185 MLECQ14165 292 aa22.78■■□□□ 1.24
HDAC4-215ENST00000543185 TRIM21P19474 475 aaKnown RBP22.78■■□□□ 1.24
HDAC4-215ENST00000543185 CCDC83Q8IWF9 413 aa22.77■■□□□ 1.24
HDAC4-215ENST00000543185 ERICH4A6NGS2 130 aa22.77■■□□□ 1.24
HDAC4-215ENST00000543185 LRRFIP2Q9Y608 721 aaKnown RBP22.77■■□□□ 1.24
HDAC4-215ENST00000543185 CCDC27Q2M243 656 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms