RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 TRIM29Q14134 588 aa17.21■□□□□ 0.35
USP3-204ENST00000540797 AMOTL2Q9Y2J4 779 aa17.21■□□□□ 0.35
USP3-204ENST00000540797 ATP6V1DQ9Y5K8 247 aa17.21■□□□□ 0.35
USP3-204ENST00000540797 ERICH2A1L162 156 aa17.2■□□□□ 0.34
USP3-204ENST00000540797 INTS3Q68E01 1043 aaKnown RBP17.2■□□□□ 0.34
USP3-204ENST00000540797 TSR2Q969E8 191 aaKnown RBP17.2■□□□□ 0.34
USP3-204ENST00000540797 SURF6O75683 361 aaKnown RBP17.2■□□□□ 0.34
USP3-204ENST00000540797 SLC4A2P04920 1241 aa17.2■□□□□ 0.34
USP3-204ENST00000540797 NFXL1Q6ZNB6 911 aa17.2■□□□□ 0.34
USP3-204ENST00000540797 CLASRPQ8N2M8 674 aaKnown RBP17.19■□□□□ 0.34
USP3-204ENST00000540797 FYB1O15117 783 aa17.18■□□□□ 0.34
USP3-204ENST00000540797 TCEAL9Q9UHQ7 104 aa17.18■□□□□ 0.34
USP3-204ENST00000540797 NSD3Q9BZ95 1437 aa17.18■□□□□ 0.34
USP3-204ENST00000540797 DCAF8L1A6NGE4 600 aa17.17■□□□□ 0.34
USP3-204ENST00000540797 RTN4Q9NQC3 1192 aaKnown RBP17.17■□□□□ 0.34
USP3-204ENST00000540797 TSHZ2Q9NRE2 1034 aa17.17■□□□□ 0.34
USP3-204ENST00000540797 UNC13AQ9UPW8 1703 aa17.17■□□□□ 0.34
USP3-204ENST00000540797 PHF14O94880 888 aa17.17■□□□□ 0.34
USP3-204ENST00000540797 FOXD4L6Q3SYB3 417 aaPredicted RBP17.17■□□□□ 0.34
USP3-204ENST00000540797 FOXD4L3Q6VB84 417 aaPredicted RBP17.17■□□□□ 0.34
USP3-204ENST00000540797 PPP1R1BQ9UD71 204 aaPredicted RBP17.16■□□□□ 0.34
USP3-204ENST00000540797 PHF8Q9UPP1 1060 aa17.16■□□□□ 0.34
USP3-204ENST00000540797 RALYLQ86SE5 291 aaKnown RBP17.15■□□□□ 0.34
USP3-204ENST00000540797 ADGRF5Q8IZF2 1346 aa17.15■□□□□ 0.34
USP3-204ENST00000540797 TBC1D2BQ9UPU7 963 aa17.15■□□□□ 0.34
USP3-204ENST00000540797 NCOA1Q15788 1441 aa17.15■□□□□ 0.34
USP3-204ENST00000540797 DHX29Q7Z478 1369 aaKnown RBP17.15■□□□□ 0.34
USP3-204ENST00000540797 FCHSD2O94868 740 aa17.15■□□□□ 0.34
USP3-204ENST00000540797 MYL6BP14649 208 aa17.15■□□□□ 0.34
USP3-204ENST00000540797 BIVM-ERCC5R4GMW8 1640 aa17.15■□□□□ 0.34
USP3-204ENST00000540797 CNNM1Q9NRU3 951 aa17.15■□□□□ 0.34
USP3-204ENST00000540797 BTBD11A6QL63 1104 aa17.14■□□□□ 0.34
USP3-204ENST00000540797 FSD1Q9BTV5 496 aa17.14■□□□□ 0.34
USP3-204ENST00000540797 NOB1Q9ULX3 412 aaKnown RBP17.14■□□□□ 0.34
USP3-204ENST00000540797 GNAI2P04899 355 aa17.14■□□□□ 0.33
USP3-204ENST00000540797 FOXO3O43524 673 aa17.14■□□□□ 0.33
USP3-204ENST00000540797 WDR63Q8IWG1 891 aa17.14■□□□□ 0.33
USP3-204ENST00000540797 GOLGA6L3A6NEY3 463 aa17.14■□□□□ 0.33
USP3-204ENST00000540797 DMRT2Q9Y5R5 561 aa17.14■□□□□ 0.33
USP3-204ENST00000540797 MAP3K1Q13233 1512 aa17.13■□□□□ 0.33
USP3-204ENST00000540797 SAMD1Q6SPF0 538 aaPredicted RBP17.13■□□□□ 0.33
USP3-204ENST00000540797 NINLQ9Y2I6 1382 aa17.13■□□□□ 0.33
USP3-204ENST00000540797 CNTROBQ8N137 903 aa17.13■□□□□ 0.33
USP3-204ENST00000540797 CWC22Q9HCG8 908 aaKnown RBP17.13■□□□□ 0.33
USP3-204ENST00000540797 DDX11L8A8MPP1 907 aa17.12■□□□□ 0.33
USP3-204ENST00000540797 SLC4A3P48751 1232 aa17.12■□□□□ 0.33
USP3-204ENST00000540797 WASLO00401 505 aaPredicted RBP17.12■□□□□ 0.33
USP3-204ENST00000540797 TPD52L1Q16890 204 aaPredicted RBP17.12■□□□□ 0.33
USP3-204ENST00000540797 DNAJC2Q99543 621 aaKnown RBP17.12■□□□□ 0.33
USP3-204ENST00000540797 SRCIN1Q9C0H9 1055 aa17.12■□□□□ 0.33
USP3-204ENST00000540797 CCT4P50991 539 aaKnown RBP17.12■□□□□ 0.33
USP3-204ENST00000540797 ERC1Q8IUD2 1116 aa17.12■□□□□ 0.33
USP3-204ENST00000540797 ASXL2Q76L83 1435 aa17.12■□□□□ 0.33
USP3-204ENST00000540797 FAM135AQ9P2D6 1515 aa17.11■□□□□ 0.33
USP3-204ENST00000540797 WWC1Q8IX03 1113 aa17.11■□□□□ 0.33
USP3-204ENST00000540797 PES1O00541 588 aaKnown RBP17.11■□□□□ 0.33
USP3-204ENST00000540797 CDC45O75419 566 aa17.11■□□□□ 0.33
USP3-204ENST00000540797 DEKP35659 375 aaKnown RBP17.11■□□□□ 0.33
USP3-204ENST00000540797 C1orf115Q9H7X2 142 aa17.11■□□□□ 0.33
USP3-204ENST00000540797 GNAT3A8MTJ3 354 aa17.1■□□□□ 0.33
USP3-204ENST00000540797 ADAMTS2O95450 1211 aa17.1■□□□□ 0.33
USP3-204ENST00000540797 NME9Q86XW9 330 aa17.1■□□□□ 0.33
USP3-204ENST00000540797 NFE2L2Q16236 605 aa17.09■□□□□ 0.33
USP3-204ENST00000540797 ZNF428Q96B54 188 aa17.09■□□□□ 0.33
USP3-204ENST00000540797 GNL3LQ9NVN8 582 aaKnown RBP17.09■□□□□ 0.33
USP3-204ENST00000540797 TEX14Q8IWB6 1497 aa17.09■□□□□ 0.33
USP3-204ENST00000540797 CT47B1P0C2W7 299 aaPredicted RBP17.09■□□□□ 0.33
USP3-204ENST00000540797 TNRQ92752 1358 aa17.09■□□□□ 0.33
USP3-204ENST00000540797 DDX49Q9Y6V7 483 aaKnown RBP17.09■□□□□ 0.33
USP3-204ENST00000540797 NOS1P29475 1434 aa17.09■□□□□ 0.33
USP3-204ENST00000540797 CCDC158Q5M9N0 1113 aa17.08■□□□□ 0.33
USP3-204ENST00000540797 PDE3AQ14432 1141 aa17.08■□□□□ 0.32
USP3-204ENST00000540797 TTC39AQ5SRH9 613 aa17.08■□□□□ 0.32
USP3-204ENST00000540797 SMC3Q9UQE7 1217 aa17.07■□□□□ 0.32
USP3-204ENST00000540797 BCAR3O75815 825 aa17.07■□□□□ 0.32
USP3-204ENST00000540797 THOC2Q8NI27 1593 aaKnown RBP17.07■□□□□ 0.32
USP3-204ENST00000540797 PLCH2O75038 1416 aa17.06■□□□□ 0.32
USP3-204ENST00000540797 SAFBQ15424 915 aaKnown RBP eCLIP17.06■□□□□ 0.32
USP3-204ENST00000540797 MPHOSPH8Q99549 860 aa17.06■□□□□ 0.32
USP3-204ENST00000540797 ATP10BO94823 1461 aa17.06■□□□□ 0.32
USP3-204ENST00000540797 GPATCH8Q9UKJ3 1502 aaKnown RBP17.06■□□□□ 0.32
USP3-204ENST00000540797 VPS37CA5D8V6 355 aaPredicted RBP17.06■□□□□ 0.32
USP3-204ENST00000540797 STARD3NLO95772 234 aa17.06■□□□□ 0.32
USP3-204ENST00000540797 SIL1Q9H173 461 aa17.06■□□□□ 0.32
USP3-204ENST00000540797 CCDC57Q2TAC2 916 aa17.06■□□□□ 0.32
USP3-204ENST00000540797 TMPOP42166 694 aaKnown RBP17.05■□□□□ 0.32
USP3-204ENST00000540797 LRPPRCP42704 1394 aaKnown RBP17.05■□□□□ 0.32
USP3-204ENST00000540797 GCC1Q96CN9 775 aa17.05■□□□□ 0.32
USP3-204ENST00000540797 WDR97A6NE52 1622 aa17.05■□□□□ 0.32
USP3-204ENST00000540797 HMGB2P26583 209 aaKnown RBP17.05■□□□□ 0.32
USP3-204ENST00000540797 KRT28Q7Z3Y7 464 aa17.05■□□□□ 0.32
USP3-204ENST00000540797 C22orf23Q9BZE7 217 aa17.05■□□□□ 0.32
USP3-204ENST00000540797 TMOD3Q9NYL9 352 aa17.05■□□□□ 0.32
USP3-204ENST00000540797 MTMR7Q9Y216 660 aa17.05■□□□□ 0.32
USP3-204ENST00000540797 CCDC47Q96A33 483 aaKnown RBP17.05■□□□□ 0.32
USP3-204ENST00000540797 USHBP1Q8N6Y0 703 aa17.04■□□□□ 0.32
USP3-204ENST00000540797 NGLY1Q96IV0 654 aa17.04■□□□□ 0.32
USP3-204ENST00000540797 C14orf93Q9H972 538 aaKnown RBP17.04■□□□□ 0.32
USP3-204ENST00000540797 HIP1O00291 1037 aa17.04■□□□□ 0.32
USP3-204ENST00000540797 PSMA5P28066 241 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms