RNA–Protein interactions for RNA: ENST00000540537.5

CHFR-217, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 913 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-217ENST00000540537 CRYBG1Q9Y4K1 1723 aa30.08■■■□□ 2.41
CHFR-217ENST00000540537 RALGAPBQ86X10 1494 aa30.08■■■□□ 2.41
CHFR-217ENST00000540537 GLI3P10071 1580 aa30.07■■■□□ 2.4
CHFR-217ENST00000540537 ROCK2O75116 1388 aaKnown RBP30.07■■■□□ 2.4
CHFR-217ENST00000540537 ATAD2Q6PL18 1390 aa30.07■■■□□ 2.4
CHFR-217ENST00000540537 TRIM26Q12899 539 aaPredicted RBP30.07■■■□□ 2.4
CHFR-217ENST00000540537 ACEP12821 1306 aa30.06■■■□□ 2.4
CHFR-217ENST00000540537 FAM83GA6ND36 823 aa30.06■■■□□ 2.4
CHFR-217ENST00000540537 SRPK2P78362 688 aaKnown RBP30.06■■■□□ 2.4
CHFR-217ENST00000540537 VPS72Q15906 364 aa30.05■■■□□ 2.4
CHFR-217ENST00000540537 NBPF8Q3BBV2 869 aa30.05■■■□□ 2.4
CHFR-217ENST00000540537 COL14A1Q05707 1796 aaKnown RBP30.03■■■□□ 2.4
CHFR-217ENST00000540537 PPIP5K1Q6PFW1 1433 aa30.02■■■□□ 2.4
CHFR-217ENST00000540537 CABP2Q9NPB3 220 aa30.01■■■□□ 2.39
CHFR-217ENST00000540537 NRAPQ86VF7 1730 aa30■■■□□ 2.39
CHFR-217ENST00000540537 PHRF1Q9P1Y6 1649 aaKnown RBP29.98■■■□□ 2.39
CHFR-217ENST00000540537 EVC2Q86UK5 1308 aa29.96■■■□□ 2.39
CHFR-217ENST00000540537 TONSLQ96HA7 1378 aa29.96■■■□□ 2.39
CHFR-217ENST00000540537 BTG4Q9NY30 223 aa29.96■■■□□ 2.39
CHFR-217ENST00000540537 BRD4O60885 1362 aaPredicted RBP29.95■■■□□ 2.39
CHFR-217ENST00000540537 EP400Q96L91 3159 aa29.95■■■□□ 2.38
CHFR-217ENST00000540537 CCDC9Q9Y3X0 531 aaKnown RBP29.94■■■□□ 2.38
CHFR-217ENST00000540537 PRDM11Q9NQV5 511 aa29.93■■■□□ 2.38
CHFR-217ENST00000540537 ONECUT3O60422 494 aaPredicted RBP29.92■■■□□ 2.38
CHFR-217ENST00000540537 NUTM2GQ5VZR2 741 aa29.91■■■□□ 2.38
CHFR-217ENST00000540537 ABTB2Q8N961 1025 aa29.91■■■□□ 2.38
CHFR-217ENST00000540537 CABP1Q9NZU7 370 aa29.91■■■□□ 2.38
CHFR-217ENST00000540537 BRWD3Q6RI45 1802 aa29.91■■■□□ 2.38
CHFR-217ENST00000540537 KIAA0232Q92628 1395 aa29.9■■■□□ 2.38
CHFR-217ENST00000540537 SEPT12Q8IYM1 358 aa29.9■■■□□ 2.38
CHFR-217ENST00000540537 USP6P35125 1406 aa29.88■■■□□ 2.37
CHFR-217ENST00000540537 NRKQ7Z2Y5 1582 aa29.88■■■□□ 2.37
CHFR-217ENST00000540537 USP19O94966 1318 aa29.88■■■□□ 2.37
CHFR-217ENST00000540537 SBNO2Q9Y2G9 1366 aa29.88■■■□□ 2.37
CHFR-217ENST00000540537 CARD11Q9BXL7 1154 aa29.87■■■□□ 2.37
CHFR-217ENST00000540537 CCDC125Q86Z20 511 aa29.86■■■□□ 2.37
CHFR-217ENST00000540537 NLRP13Q86W25 1043 aa29.85■■■□□ 2.37
CHFR-217ENST00000540537 ZC3H6P61129 1189 aaKnown RBP29.84■■■□□ 2.37
CHFR-217ENST00000540537 SPATA31A5Q5VU36 1347 aa29.84■■■□□ 2.37
CHFR-217ENST00000540537 SPATA31A7Q8IWB4 1347 aa29.84■■■□□ 2.37
CHFR-217ENST00000540537 CHRNA2Q15822 529 aa29.83■■■□□ 2.37
CHFR-217ENST00000540537 CPDO75976 1380 aa29.82■■■□□ 2.36
CHFR-217ENST00000540537 SSH2Q76I76 1423 aa29.81■■■□□ 2.36
CHFR-217ENST00000540537 FAM98CQ17RN3 349 aaKnown RBP29.81■■■□□ 2.36
CHFR-217ENST00000540537 KRT27Q7Z3Y8 459 aa29.8■■■□□ 2.36
CHFR-217ENST00000540537 AKAP12Q02952 1782 aa29.79■■■□□ 2.36
CHFR-217ENST00000540537 GCP02774 474 aa29.78■■■□□ 2.36
CHFR-217ENST00000540537 ZNF692Q9BU19 519 aaPredicted RBP29.78■■■□□ 2.36
CHFR-217ENST00000540537 A0A0G2JS52 829 aa29.77■■■□□ 2.36
CHFR-217ENST00000540537 MYT1Q01538 1121 aa29.77■■■□□ 2.36
CHFR-217ENST00000540537 BLMP54132 1417 aaPredicted RBP29.77■■■□□ 2.36
CHFR-217ENST00000540537 LMO7Q8WWI1 1683 aa29.76■■■□□ 2.36
CHFR-217ENST00000540537 PIK3C2AO00443 1686 aa29.76■■■□□ 2.35
CHFR-217ENST00000540537 THSD7AQ9UPZ6 1657 aa29.76■■■□□ 2.35
CHFR-217ENST00000540537 SPATA31A1Q5TZJ5 1347 aa29.75■■■□□ 2.35
CHFR-217ENST00000540537 NLRP6P59044 892 aa29.75■■■□□ 2.35
CHFR-217ENST00000540537 STRN4Q9NRL3 753 aa29.75■■■□□ 2.35
CHFR-217ENST00000540537 SLIT3O75094 1523 aa29.75■■■□□ 2.35
CHFR-217ENST00000540537 CPSF1Q10570 1443 aaKnown RBP29.74■■■□□ 2.35
CHFR-217ENST00000540537 CAMTA1Q9Y6Y1 1673 aa29.74■■■□□ 2.35
CHFR-217ENST00000540537 TTC21BQ7Z4L5 1316 aa29.71■■■□□ 2.35
CHFR-217ENST00000540537 TTC21AQ8NDW8 1320 aa29.71■■■□□ 2.35
CHFR-217ENST00000540537 EVA1CP58658 441 aa29.7■■■□□ 2.35
CHFR-217ENST00000540537 MON2Q7Z3U7 1717 aa29.68■■■□□ 2.34
CHFR-217ENST00000540537 KTN1Q86UP2 1357 aaKnown RBP29.68■■■□□ 2.34
CHFR-217ENST00000540537 SF3B2Q13435 895 aaKnown RBP29.66■■■□□ 2.34
CHFR-217ENST00000540537 AATKQ6ZMQ8 1374 aa29.65■■■□□ 2.34
CHFR-217ENST00000540537 PUS7Q96PZ0 661 aaKnown RBP29.65■■■□□ 2.34
CHFR-217ENST00000540537 COL5A2P05997 1499 aaPredicted RBP29.65■■■□□ 2.34
CHFR-217ENST00000540537 LARP1Q6PKG0 1096 aaKnown RBP29.64■■■□□ 2.34
CHFR-217ENST00000540537 BARGINQ6ZT62 677 aa29.64■■■□□ 2.34
CHFR-217ENST00000540537 CD163L1Q9NR16 1453 aa29.63■■■□□ 2.33
CHFR-217ENST00000540537 KCNH5Q8NCM2 988 aa29.62■■■□□ 2.33
CHFR-217ENST00000540537 USP35Q9P2H5 1018 aa29.62■■■□□ 2.33
CHFR-217ENST00000540537 TCP11L2Q8N4U5 519 aa29.61■■■□□ 2.33
CHFR-217ENST00000540537 TESK2Q96S53 571 aa29.61■■■□□ 2.33
CHFR-217ENST00000540537 COL18A1P39060 1754 aa29.61■■■□□ 2.33
CHFR-217ENST00000540537 ST20-MTHFSA0A0A6YYL1 179 aa29.6■■■□□ 2.33
CHFR-217ENST00000540537 ZBTB7CA1YPR0 619 aa29.6■■■□□ 2.33
CHFR-217ENST00000540537 SLC24A1O60721 1099 aa29.6■■■□□ 2.33
CHFR-217ENST00000540537 TMC1Q8TDI8 760 aa29.6■■■□□ 2.33
CHFR-217ENST00000540537 THRAP3Q9Y2W1 955 aaKnown RBP29.6■■■□□ 2.33
CHFR-217ENST00000540537 DEFB132Q7Z7B7 95 aa29.59■■■□□ 2.33
CHFR-217ENST00000540537 ZRANB1Q9UGI0 708 aa29.59■■■□□ 2.33
CHFR-217ENST00000540537 CRB1P82279 1406 aa29.58■■■□□ 2.33
CHFR-217ENST00000540537 HDGFL2Q7Z4V5 671 aaPredicted RBP29.58■■■□□ 2.33
CHFR-217ENST00000540537 RGPD1P0DJD0 1748 aa29.57■■■□□ 2.32
CHFR-217ENST00000540537 USP54Q70EL1 1684 aa29.57■■■□□ 2.32
CHFR-217ENST00000540537 CLSPNQ9HAW4 1339 aa29.57■■■□□ 2.32
CHFR-217ENST00000540537 ARHGEF25Q86VW2 580 aa29.57■■■□□ 2.32
CHFR-217ENST00000540537 SLC12A5Q9H2X9 1139 aa29.57■■■□□ 2.32
CHFR-217ENST00000540537 NFAT5O94916 1531 aa29.56■■■□□ 2.32
CHFR-217ENST00000540537 USP31Q70CQ4 1352 aa29.56■■■□□ 2.32
CHFR-217ENST00000540537 FAM182BQ5T319 152 aa29.56■■■□□ 2.32
CHFR-217ENST00000540537 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.55■■■□□ 2.32
CHFR-217ENST00000540537 TERF2IPQ9NYB0 399 aa29.55■■■□□ 2.32
CHFR-217ENST00000540537 EDC4Q6P2E9 1401 aaKnown RBP29.54■■■□□ 2.32
CHFR-217ENST00000540537 NINLQ9Y2I6 1382 aa29.54■■■□□ 2.32
CHFR-217ENST00000540537 TIMELESSQ9UNS1 1208 aa29.54■■■□□ 2.32
CHFR-217ENST00000540537 BAG6P46379 1132 aa29.53■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms