RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 HDGFL2Q7Z4V5 671 aaPredicted RBP16.77■□□□□ 0.28
CHD4-203ENST00000535717 MYOM1P52179 1685 aa16.77■□□□□ 0.28
CHD4-203ENST00000535717 ALS2Q96Q42 1657 aa16.77■□□□□ 0.28
CHD4-203ENST00000535717 A0A1W2PP64 1363 aa16.77■□□□□ 0.27
CHD4-203ENST00000535717 BRD4O60885 1362 aaPredicted RBP16.77■□□□□ 0.27
CHD4-203ENST00000535717 KIF7Q2M1P5 1343 aa16.76■□□□□ 0.27
CHD4-203ENST00000535717 SPATA31A6Q5VVP1 1343 aa16.76■□□□□ 0.27
CHD4-203ENST00000535717 COL22A1Q8NFW1 1626 aaPredicted RBP16.76■□□□□ 0.27
CHD4-203ENST00000535717 MON2Q7Z3U7 1717 aa16.76■□□□□ 0.27
CHD4-203ENST00000535717 ARHGEF10O15013 1369 aa16.76■□□□□ 0.27
CHD4-203ENST00000535717 ANKRD36BQ8N2N9 1353 aa16.75■□□□□ 0.27
CHD4-203ENST00000535717 TTC21BQ7Z4L5 1316 aa16.74■□□□□ 0.27
CHD4-203ENST00000535717 NRKQ7Z2Y5 1582 aa16.74■□□□□ 0.27
CHD4-203ENST00000535717 NUTM2BA6NNL0 878 aaPredicted RBP16.74■□□□□ 0.27
CHD4-203ENST00000535717 NUTM2EB1AL46 878 aaPredicted RBP16.74■□□□□ 0.27
CHD4-203ENST00000535717 NUTM2AQ8IVF1 878 aaPredicted RBP16.74■□□□□ 0.27
CHD4-203ENST00000535717 NUTM2GQ5VZR2 741 aa16.73■□□□□ 0.27
CHD4-203ENST00000535717 ABTB2Q8N961 1025 aa16.73■□□□□ 0.27
CHD4-203ENST00000535717 LRP6O75581 1613 aa16.73■□□□□ 0.27
CHD4-203ENST00000535717 EDC4Q6P2E9 1401 aaKnown RBP16.72■□□□□ 0.27
CHD4-203ENST00000535717 PLEKHG5O94827 1062 aa16.72■□□□□ 0.27
CHD4-203ENST00000535717 CABLES1Q8TDN4 633 aa16.72■□□□□ 0.27
CHD4-203ENST00000535717 CCDC7Q96M83 1385 aa16.72■□□□□ 0.27
CHD4-203ENST00000535717 WASHC2AQ641Q2 1341 aa16.71■□□□□ 0.27
CHD4-203ENST00000535717 TTC21AQ8NDW8 1320 aa16.71■□□□□ 0.27
CHD4-203ENST00000535717 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.71■□□□□ 0.27
CHD4-203ENST00000535717 PIK3C2AO00443 1686 aa16.7■□□□□ 0.26
CHD4-203ENST00000535717 MED1Q15648 1581 aaPredicted RBP16.7■□□□□ 0.26
CHD4-203ENST00000535717 CARD14Q9BXL6 1004 aa16.7■□□□□ 0.26
CHD4-203ENST00000535717 ABCA3Q99758 1704 aa16.68■□□□□ 0.26
CHD4-203ENST00000535717 ADAMTS2O95450 1211 aa16.68■□□□□ 0.26
CHD4-203ENST00000535717 NLRP6P59044 892 aa16.68■□□□□ 0.26
CHD4-203ENST00000535717 NLRP13Q86W25 1043 aa16.68■□□□□ 0.26
CHD4-203ENST00000535717 NME9Q86XW9 330 aa16.68■□□□□ 0.26
CHD4-203ENST00000535717 CRYBG1Q9Y4K1 1723 aa16.67■□□□□ 0.26
CHD4-203ENST00000535717 PANK3Q9H999 370 aa16.67■□□□□ 0.26
CHD4-203ENST00000535717 ZRANB1Q9UGI0 708 aa16.67■□□□□ 0.26
CHD4-203ENST00000535717 USP19O94966 1318 aa16.67■□□□□ 0.26
CHD4-203ENST00000535717 HAP1P54257 671 aaPredicted RBP16.66■□□□□ 0.26
CHD4-203ENST00000535717 MEX3CQ5U5Q3 659 aaKnown RBP16.66■□□□□ 0.26
CHD4-203ENST00000535717 NSD3Q9BZ95 1437 aa16.66■□□□□ 0.26
CHD4-203ENST00000535717 USP31Q70CQ4 1352 aa16.65■□□□□ 0.26
CHD4-203ENST00000535717 PHRF1Q9P1Y6 1649 aaKnown RBP16.65■□□□□ 0.26
CHD4-203ENST00000535717 MARF1Q9Y4F3 1742 aaKnown RBP16.65■□□□□ 0.26
CHD4-203ENST00000535717 FYB1O15117 783 aa16.63■□□□□ 0.25
CHD4-203ENST00000535717 SLIT3O75094 1523 aa16.63■□□□□ 0.25
CHD4-203ENST00000535717 GCP02774 474 aa16.62■□□□□ 0.25
CHD4-203ENST00000535717 C8orf37Q96NL8 207 aa16.62■□□□□ 0.25
CHD4-203ENST00000535717 USP54Q70EL1 1684 aa16.62■□□□□ 0.25
CHD4-203ENST00000535717 OVOS2A0A0J9YW53 1432 aa16.62■□□□□ 0.25
CHD4-203ENST00000535717 OVOS2Q6IE36 1432 aa16.62■□□□□ 0.25
CHD4-203ENST00000535717 FAM83GA6ND36 823 aa16.6■□□□□ 0.25
CHD4-203ENST00000535717 ZC3H6P61129 1189 aaKnown RBP16.6■□□□□ 0.25
CHD4-203ENST00000535717 NGLY1Q96IV0 654 aa16.6■□□□□ 0.25
CHD4-203ENST00000535717 GGNBP2Q9H3C7 697 aa16.6■□□□□ 0.25
CHD4-203ENST00000535717 KIF20BQ96Q89 1820 aa16.59■□□□□ 0.25
CHD4-203ENST00000535717 COG3Q96JB2 828 aa16.59■□□□□ 0.25
CHD4-203ENST00000535717 CGNL1Q0VF96 1302 aa16.59■□□□□ 0.25
CHD4-203ENST00000535717 KIAA0232Q92628 1395 aa16.59■□□□□ 0.25
CHD4-203ENST00000535717 SOX12O15370 315 aa16.58■□□□□ 0.24
CHD4-203ENST00000535717 FNBP4Q8N3X1 1017 aaPredicted RBP16.58■□□□□ 0.24
CHD4-203ENST00000535717 KCNH5Q8NCM2 988 aa16.58■□□□□ 0.24
CHD4-203ENST00000535717 RGS17Q9UGC6 210 aaPredicted RBP16.58■□□□□ 0.24
CHD4-203ENST00000535717 AFF2P51816 1311 aa16.58■□□□□ 0.24
CHD4-203ENST00000535717 CPDO75976 1380 aa16.58■□□□□ 0.24
CHD4-203ENST00000535717 NFAT5O94916 1531 aa16.58■□□□□ 0.24
CHD4-203ENST00000535717 PER1O15534 1290 aaPredicted RBP16.57■□□□□ 0.24
CHD4-203ENST00000535717 PRDM11Q9NQV5 511 aa16.57■□□□□ 0.24
CHD4-203ENST00000535717 KNSTRNQ9Y448 316 aa16.57■□□□□ 0.24
CHD4-203ENST00000535717 CHRNA2Q15822 529 aa16.56■□□□□ 0.24
CHD4-203ENST00000535717 SLIT2O94813 1529 aa16.55■□□□□ 0.24
CHD4-203ENST00000535717 COL14A1Q05707 1796 aaKnown RBP16.55■□□□□ 0.24
CHD4-203ENST00000535717 PLCH1Q4KWH8 1693 aa16.54■□□□□ 0.24
CHD4-203ENST00000535717 ZBTB7CA1YPR0 619 aa16.54■□□□□ 0.24
CHD4-203ENST00000535717 AMER1Q5JTC6 1135 aaPredicted RBP16.54■□□□□ 0.24
CHD4-203ENST00000535717 ARHGEF25Q86VW2 580 aa16.54■□□□□ 0.24
CHD4-203ENST00000535717 USP21Q9UK80 565 aa16.54■□□□□ 0.24
CHD4-203ENST00000535717 BCL9LQ86UU0 1499 aa16.54■□□□□ 0.24
CHD4-203ENST00000535717 FBLN1P23142 703 aa16.53■□□□□ 0.24
CHD4-203ENST00000535717 ZNF772Q68DY9 489 aaPredicted RBP16.53■□□□□ 0.24
CHD4-203ENST00000535717 BTG4Q9NY30 223 aa16.53■□□□□ 0.24
CHD4-203ENST00000535717 NSD2O96028 1365 aa16.52■□□□□ 0.24
CHD4-203ENST00000535717 ZNF316A6NFI3 1004 aaPredicted RBP16.52■□□□□ 0.24
CHD4-203ENST00000535717 AATKQ6ZMQ8 1374 aa16.51■□□□□ 0.23
CHD4-203ENST00000535717 NWD2Q9ULI1 1742 aa16.51■□□□□ 0.23
CHD4-203ENST00000535717 ANKRD26Q9UPS8 1709 aa16.51■□□□□ 0.23
CHD4-203ENST00000535717 LMO7Q8WWI1 1683 aa16.51■□□□□ 0.23
CHD4-203ENST00000535717 POTEAQ6S8J7 498 aa16.51■□□□□ 0.23
CHD4-203ENST00000535717 UNC5CLQ8IV45 518 aa16.51■□□□□ 0.23
CHD4-203ENST00000535717 COL18A1P39060 1754 aa16.51■□□□□ 0.23
CHD4-203ENST00000535717 CAMTA1Q9Y6Y1 1673 aa16.5■□□□□ 0.23
CHD4-203ENST00000535717 DDX10Q13206 875 aaKnown RBP16.5■□□□□ 0.23
CHD4-203ENST00000535717 LTN1O94822 1766 aa16.49■□□□□ 0.23
CHD4-203ENST00000535717 NRAPQ86VF7 1730 aa16.49■□□□□ 0.23
CHD4-203ENST00000535717 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.49■□□□□ 0.23
CHD4-203ENST00000535717 QTRT2Q9H974 415 aaKnown RBP16.49■□□□□ 0.23
CHD4-203ENST00000535717 AXIN2Q9Y2T1 843 aa16.49■□□□□ 0.23
CHD4-203ENST00000535717 MAP3K19Q56UN5 1328 aa16.48■□□□□ 0.23
CHD4-203ENST00000535717 ATRNO75882 1429 aa16.48■□□□□ 0.23
CHD4-203ENST00000535717 RRS1Q15050 365 aaKnown RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms