RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, human

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP3-215	ENST00000533946	PLEKHG3	A1L390	1219 aa		13.86	□□□□□ -0.19
SSBP3-215	ENST00000533946	CHRNA2	Q15822	529 aa		13.86	□□□□□ -0.19
SSBP3-215	ENST00000533946	UNC5CL	Q8IV45	518 aa		13.86	□□□□□ -0.19
SSBP3-215	ENST00000533946	CABP1	Q9NZU7	370 aa		13.86	□□□□□ -0.19
SSBP3-215	ENST00000533946	TRPC5	Q9UL62	973 aa	Predicted RBP	13.86	□□□□□ -0.19
SSBP3-215	ENST00000533946	CCDC61	Q9Y6R9	512 aa		13.86	□□□□□ -0.19
SSBP3-215	ENST00000533946	RALGAPB	Q86X10	1494 aa		13.86	□□□□□ -0.19
SSBP3-215	ENST00000533946	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.86	□□□□□ -0.19
SSBP3-215	ENST00000533946	POLR3A	O14802	1390 aa	Predicted RBP	13.85	□□□□□ -0.19
SSBP3-215	ENST00000533946	NRAP	Q86VF7	1730 aa		13.85	□□□□□ -0.19
SSBP3-215	ENST00000533946	PPIP5K1	Q6PFW1	1433 aa		13.85	□□□□□ -0.19
SSBP3-215	ENST00000533946	GJD4	Q96KN9	370 aa	Predicted RBP	13.85	□□□□□ -0.19
SSBP3-215	ENST00000533946	GPRASP1	Q5JY77	1395 aa		13.84	□□□□□ -0.19
SSBP3-215	ENST00000533946	HAP1	P54257	671 aa	Predicted RBP	13.84	□□□□□ -0.19
SSBP3-215	ENST00000533946	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.84	□□□□□ -0.19
SSBP3-215	ENST00000533946	ARHGEF10	O15013	1369 aa		13.83	□□□□□ -0.19
SSBP3-215	ENST00000533946	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.83	□□□□□ -0.2
SSBP3-215	ENST00000533946	ZC3H6	P61129	1189 aa	Known RBP	13.83	□□□□□ -0.2
SSBP3-215	ENST00000533946	BTG4	Q9NY30	223 aa		13.83	□□□□□ -0.2
SSBP3-215	ENST00000533946	PCGF6	Q9BYE7	350 aa		13.82	□□□□□ -0.2
SSBP3-215	ENST00000533946	ZRANB1	Q9UGI0	708 aa		13.82	□□□□□ -0.2
SSBP3-215	ENST00000533946	EIF3A	Q14152	1382 aa	Known RBP	13.82	□□□□□ -0.2
SSBP3-215	ENST00000533946	KIAA0232	Q92628	1395 aa		13.82	□□□□□ -0.2
SSBP3-215	ENST00000533946	FAM182B	Q5T319	152 aa		13.8	□□□□□ -0.2
SSBP3-215	ENST00000533946	CARD11	Q9BXL7	1154 aa		13.8	□□□□□ -0.2
SSBP3-215	ENST00000533946	NWD2	Q9ULI1	1742 aa		13.8	□□□□□ -0.2
SSBP3-215	ENST00000533946	TONSL	Q96HA7	1378 aa		13.8	□□□□□ -0.2
SSBP3-215	ENST00000533946	VPS72	Q15906	364 aa		13.79	□□□□□ -0.2
SSBP3-215	ENST00000533946	ABTB2	Q8N961	1025 aa		13.79	□□□□□ -0.2
SSBP3-215	ENST00000533946	CCDC9	Q9Y3X0	531 aa	Known RBP	13.79	□□□□□ -0.2
SSBP3-215	ENST00000533946	SSH2	Q76I76	1423 aa		13.79	□□□□□ -0.2
SSBP3-215	ENST00000533946	NRK	Q7Z2Y5	1582 aa		13.79	□□□□□ -0.2
SSBP3-215	ENST00000533946	PIK3C2A	O00443	1686 aa		13.79	□□□□□ -0.2
SSBP3-215	ENST00000533946	COL14A1	Q05707	1796 aa	Known RBP	13.78	□□□□□ -0.2
SSBP3-215	ENST00000533946	SEPT12	Q8IYM1	358 aa		13.78	□□□□□ -0.2
SSBP3-215	ENST00000533946	USP6	P35125	1406 aa		13.77	□□□□□ -0.21
SSBP3-215	ENST00000533946	FAM98C	Q17RN3	349 aa	Known RBP	13.77	□□□□□ -0.21
SSBP3-215	ENST00000533946	PRDM11	Q9NQV5	511 aa		13.77	□□□□□ -0.21
SSBP3-215	ENST00000533946	CAMTA1	Q9Y6Y1	1673 aa		13.77	□□□□□ -0.21
SSBP3-215	ENST00000533946	AKAP12	Q02952	1782 aa		13.76	□□□□□ -0.21
SSBP3-215	ENST00000533946	CD163L1	Q9NR16	1453 aa		13.76	□□□□□ -0.21
SSBP3-215	ENST00000533946	EVC2	Q86UK5	1308 aa		13.76	□□□□□ -0.21
SSBP3-215	ENST00000533946	USP19	O94966	1318 aa		13.75	□□□□□ -0.21
SSBP3-215	ENST00000533946	TESK2	Q96S53	571 aa		13.75	□□□□□ -0.21
SSBP3-215	ENST00000533946	SLC12A5	Q9H2X9	1139 aa		13.75	□□□□□ -0.21
SSBP3-215	ENST00000533946	STRN4	Q9NRL3	753 aa		13.75	□□□□□ -0.21
SSBP3-215	ENST00000533946	ST20-MTHFS	A0A0A6YYL1	179 aa		13.74	□□□□□ -0.21
SSBP3-215	ENST00000533946	ZBTB7C	A1YPR0	619 aa		13.74	□□□□□ -0.21
SSBP3-215	ENST00000533946	SOX12	O15370	315 aa		13.74	□□□□□ -0.21
SSBP3-215	ENST00000533946	ONECUT3	O60422	494 aa	Predicted RBP	13.74	□□□□□ -0.21
SSBP3-215	ENST00000533946	LMO7	Q8WWI1	1683 aa		13.73	□□□□□ -0.21
SSBP3-215	ENST00000533946	SPATA31A5	Q5VU36	1347 aa		13.73	□□□□□ -0.21
SSBP3-215	ENST00000533946	TTC21B	Q7Z4L5	1316 aa		13.73	□□□□□ -0.21
SSBP3-215	ENST00000533946	SPATA31A7	Q8IWB4	1347 aa		13.73	□□□□□ -0.21
SSBP3-215	ENST00000533946	GC	P02774	474 aa		13.73	□□□□□ -0.21
SSBP3-215	ENST00000533946	LARP1	Q6PKG0	1096 aa	Known RBP	13.73	□□□□□ -0.21
SSBP3-215	ENST00000533946	USP35	Q9P2H5	1018 aa		13.73	□□□□□ -0.21
SSBP3-215	ENST00000533946	AXIN2	Q9Y2T1	843 aa		13.73	□□□□□ -0.21
SSBP3-215	ENST00000533946	RGPD5	Q99666	1765 aa		13.73	□□□□□ -0.21
SSBP3-215	ENST00000533946	CPSF1	Q10570	1443 aa	Known RBP	13.73	□□□□□ -0.21
SSBP3-215	ENST00000533946	NLRP6	P59044	892 aa		13.72	□□□□□ -0.21
SSBP3-215	ENST00000533946	DEFB132	Q7Z7B7	95 aa		13.72	□□□□□ -0.21
SSBP3-215	ENST00000533946	COL18A1	P39060	1754 aa		13.72	□□□□□ -0.21
SSBP3-215	ENST00000533946	ATAD2	Q6PL18	1390 aa		13.71	□□□□□ -0.21
SSBP3-215	ENST00000533946	NME9	Q86XW9	330 aa		13.71	□□□□□ -0.21
SSBP3-215	ENST00000533946	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
SSBP3-215	ENST00000533946	MON2	Q7Z3U7	1717 aa		13.7	□□□□□ -0.22
SSBP3-215	ENST00000533946	SLIT3	O75094	1523 aa		13.7	□□□□□ -0.22
SSBP3-215	ENST00000533946	SPATA31A1	Q5TZJ5	1347 aa		13.7	□□□□□ -0.22
SSBP3-215	ENST00000533946	THSD7A	Q9UPZ6	1657 aa		13.7	□□□□□ -0.22
SSBP3-215	ENST00000533946	FBLN1	P23142	703 aa		13.7	□□□□□ -0.22
SSBP3-215	ENST00000533946	TMC1	Q8TDI8	760 aa		13.7	□□□□□ -0.22
SSBP3-215	ENST00000533946		A0A0G2JS52	829 aa		13.69	□□□□□ -0.22
SSBP3-215	ENST00000533946	MYT1	Q01538	1121 aa		13.69	□□□□□ -0.22
SSBP3-215	ENST00000533946	KTN1	Q86UP2	1357 aa	Known RBP	13.69	□□□□□ -0.22
SSBP3-215	ENST00000533946	SBNO2	Q9Y2G9	1366 aa		13.69	□□□□□ -0.22
SSBP3-215	ENST00000533946	KRT27	Q7Z3Y8	459 aa		13.68	□□□□□ -0.22
SSBP3-215	ENST00000533946	NLRP13	Q86W25	1043 aa		13.68	□□□□□ -0.22
SSBP3-215	ENST00000533946	CPD	O75976	1380 aa		13.68	□□□□□ -0.22
SSBP3-215	ENST00000533946		A0A1W2PP64	1363 aa		13.67	□□□□□ -0.22
SSBP3-215	ENST00000533946	COL5A2	P05997	1499 aa	Predicted RBP	13.67	□□□□□ -0.22
SSBP3-215	ENST00000533946	NFAT5	O94916	1531 aa		13.66	□□□□□ -0.22
SSBP3-215	ENST00000533946	EVA1C	P58658	441 aa		13.65	□□□□□ -0.22
SSBP3-215	ENST00000533946	USP47	Q96K76	1375 aa		13.65	□□□□□ -0.22
SSBP3-215	ENST00000533946	PTF1A	Q7RTS3	328 aa		13.64	□□□□□ -0.23
SSBP3-215	ENST00000533946	ARHGEF25	Q86VW2	580 aa		13.64	□□□□□ -0.23
SSBP3-215	ENST00000533946	ZNF692	Q9BU19	519 aa	Predicted RBP	13.63	□□□□□ -0.23
SSBP3-215	ENST00000533946	AATK	Q6ZMQ8	1374 aa		13.62	□□□□□ -0.23
SSBP3-215	ENST00000533946	BLM	P54132	1417 aa	Predicted RBP	13.61	□□□□□ -0.23
SSBP3-215	ENST00000533946	TNS1	Q9HBL0	1735 aa	Known RBP	13.61	□□□□□ -0.23
SSBP3-215	ENST00000533946	LTN1	O94822	1766 aa		13.6	□□□□□ -0.23
SSBP3-215	ENST00000533946	BRD4	O60885	1362 aa	Predicted RBP	13.6	□□□□□ -0.23
SSBP3-215	ENST00000533946	EN1	Q05925	392 aa	Predicted RBP	13.6	□□□□□ -0.23
SSBP3-215	ENST00000533946	CCER1	Q8TC90	406 aa	Predicted RBP	13.6	□□□□□ -0.23
SSBP3-215	ENST00000533946	TTC21A	Q8NDW8	1320 aa		13.6	□□□□□ -0.23
SSBP3-215	ENST00000533946	USP54	Q70EL1	1684 aa		13.59	□□□□□ -0.23
SSBP3-215	ENST00000533946	USP31	Q70CQ4	1352 aa		13.59	□□□□□ -0.23
SSBP3-215	ENST00000533946	TRIM37	O94972	964 aa		13.59	□□□□□ -0.23
SSBP3-215	ENST00000533946	TCP11L2	Q8N4U5	519 aa		13.59	□□□□□ -0.23
SSBP3-215	ENST00000533946	CARD14	Q9BXL6	1004 aa		13.59	□□□□□ -0.23

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