RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 AFF2P51816 1311 aa18.3■□□□□ 0.52
VPS28-216ENST00000533806 ZNF772Q68DY9 489 aaPredicted RBP18.3■□□□□ 0.52
VPS28-216ENST00000533806 USP6P35125 1406 aa18.3■□□□□ 0.52
VPS28-216ENST00000533806 PAK3O75914 559 aaPredicted RBP18.29■□□□□ 0.52
VPS28-216ENST00000533806 LMOD2Q6P5Q4 547 aa18.29■□□□□ 0.52
VPS28-216ENST00000533806 NGLY1Q96IV0 654 aa18.28■□□□□ 0.52
VPS28-216ENST00000533806 ZNF692Q9BU19 519 aaPredicted RBP18.28■□□□□ 0.52
VPS28-216ENST00000533806 CD163L1Q9NR16 1453 aa18.27■□□□□ 0.52
VPS28-216ENST00000533806 BCL9LQ86UU0 1499 aa18.26■□□□□ 0.51
VPS28-216ENST00000533806 SLC12A5Q9H2X9 1139 aa18.25■□□□□ 0.51
VPS28-216ENST00000533806 SLIT2O94813 1529 aa18.24■□□□□ 0.51
VPS28-216ENST00000533806 FAM83GA6ND36 823 aa18.24■□□□□ 0.51
VPS28-216ENST00000533806 ABTB2Q8N961 1025 aa18.24■□□□□ 0.51
VPS28-216ENST00000533806 USP19O94966 1318 aa18.23■□□□□ 0.51
VPS28-216ENST00000533806 ABCA3Q99758 1704 aa18.23■□□□□ 0.51
VPS28-216ENST00000533806 CRYBG1Q9Y4K1 1723 aa18.23■□□□□ 0.51
VPS28-216ENST00000533806 TMF1P82094 1093 aa18.23■□□□□ 0.51
VPS28-216ENST00000533806 NUTM2GQ5VZR2 741 aa18.22■□□□□ 0.51
VPS28-216ENST00000533806 QTRT2Q9H974 415 aaKnown RBP18.22■□□□□ 0.51
VPS28-216ENST00000533806 USP21Q9UK80 565 aa18.22■□□□□ 0.51
VPS28-216ENST00000533806 MARF1Q9Y4F3 1742 aaKnown RBP18.22■□□□□ 0.51
VPS28-216ENST00000533806 TTC21BQ7Z4L5 1316 aa18.22■□□□□ 0.51
VPS28-216ENST00000533806 KTN1Q86UP2 1357 aaKnown RBP18.21■□□□□ 0.51
VPS28-216ENST00000533806 NINLQ9Y2I6 1382 aa18.21■□□□□ 0.51
VPS28-216ENST00000533806 PLEKHG5O94827 1062 aa18.21■□□□□ 0.51
VPS28-216ENST00000533806 HAP1P54257 671 aaPredicted RBP18.2■□□□□ 0.5
VPS28-216ENST00000533806 EIF4G2P78344 907 aaKnown RBP eCLIP18.2■□□□□ 0.5
VPS28-216ENST00000533806 NLRP13Q86W25 1043 aa18.2■□□□□ 0.5
VPS28-216ENST00000533806 TMC1Q8TDI8 760 aa18.2■□□□□ 0.5
VPS28-216ENST00000533806 ATRNO75882 1429 aa18.2■□□□□ 0.5
VPS28-216ENST00000533806 TTC21AQ8NDW8 1320 aa18.2■□□□□ 0.5
VPS28-216ENST00000533806 AKAP12Q02952 1782 aa18.19■□□□□ 0.5
VPS28-216ENST00000533806 SOCS7O14512 581 aa18.19■□□□□ 0.5
VPS28-216ENST00000533806 HSPA5P11021 654 aaKnown RBP18.19■□□□□ 0.5
VPS28-216ENST00000533806 RXRBP28702 533 aa18.19■□□□□ 0.5
VPS28-216ENST00000533806 A0A1W2PP64 1363 aa18.18■□□□□ 0.5
VPS28-216ENST00000533806 NRKQ7Z2Y5 1582 aa18.18■□□□□ 0.5
VPS28-216ENST00000533806 GCP02774 474 aa18.18■□□□□ 0.5
VPS28-216ENST00000533806 UNC5CLQ8IV45 518 aa18.18■□□□□ 0.5
VPS28-216ENST00000533806 TERF2IPQ9NYB0 399 aa18.18■□□□□ 0.5
VPS28-216ENST00000533806 TRPC5Q9UL62 973 aaPredicted RBP18.18■□□□□ 0.5
VPS28-216ENST00000533806 NLRP6P59044 892 aa18.17■□□□□ 0.5
VPS28-216ENST00000533806 RBM6P78332 1123 aaKnown RBP18.17■□□□□ 0.5
VPS28-216ENST00000533806 CDCA8Q53HL2 280 aa18.17■□□□□ 0.5
VPS28-216ENST00000533806 HDGFL2Q7Z4V5 671 aaPredicted RBP18.17■□□□□ 0.5
VPS28-216ENST00000533806 CPDO75976 1380 aa18.17■□□□□ 0.5
VPS28-216ENST00000533806 PIK3C2AO00443 1686 aa18.16■□□□□ 0.5
VPS28-216ENST00000533806 KIAA0232Q92628 1395 aa18.16■□□□□ 0.5
VPS28-216ENST00000533806 PHRF1Q9P1Y6 1649 aaKnown RBP18.16■□□□□ 0.5
VPS28-216ENST00000533806 EDC4Q6P2E9 1401 aaKnown RBP18.15■□□□□ 0.5
VPS28-216ENST00000533806 MON2Q7Z3U7 1717 aa18.15■□□□□ 0.5
VPS28-216ENST00000533806 CDK12Q9NYV4 1490 aaPredicted RBP18.15■□□□□ 0.5
VPS28-216ENST00000533806 SLIT3O75094 1523 aa18.15■□□□□ 0.5
VPS28-216ENST00000533806 USP31Q70CQ4 1352 aa18.15■□□□□ 0.5
VPS28-216ENST00000533806 ZC3H6P61129 1189 aaKnown RBP18.14■□□□□ 0.49
VPS28-216ENST00000533806 ANKRD36BQ8N2N9 1353 aa18.14■□□□□ 0.49
VPS28-216ENST00000533806 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.13■□□□□ 0.49
VPS28-216ENST00000533806 VPS72Q15906 364 aa18.13■□□□□ 0.49
VPS28-216ENST00000533806 GJD4Q96KN9 370 aaPredicted RBP18.13■□□□□ 0.49
VPS28-216ENST00000533806 PRDM11Q9NQV5 511 aa18.13■□□□□ 0.49
VPS28-216ENST00000533806 BTG4Q9NY30 223 aa18.13■□□□□ 0.49
VPS28-216ENST00000533806 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.12■□□□□ 0.49
VPS28-216ENST00000533806 ZRANB1Q9UGI0 708 aa18.12■□□□□ 0.49
VPS28-216ENST00000533806 NWD2Q9ULI1 1742 aa18.12■□□□□ 0.49
VPS28-216ENST00000533806 COL14A1Q05707 1796 aaKnown RBP18.12■□□□□ 0.49
VPS28-216ENST00000533806 C11orf95C9JLR9 678 aaPredicted RBP18.11■□□□□ 0.49
VPS28-216ENST00000533806 CHRNA2Q15822 529 aa18.11■□□□□ 0.49
VPS28-216ENST00000533806 NME9Q86XW9 330 aa18.11■□□□□ 0.49
VPS28-216ENST00000533806 PLCH1Q4KWH8 1693 aa18.11■□□□□ 0.49
VPS28-216ENST00000533806 RGS12O14924 1447 aa18.09■□□□□ 0.49
VPS28-216ENST00000533806 ONECUT3O60422 494 aaPredicted RBP18.09■□□□□ 0.49
VPS28-216ENST00000533806 CARD14Q9BXL6 1004 aa18.09■□□□□ 0.49
VPS28-216ENST00000533806 ARHGEF25Q86VW2 580 aa18.08■□□□□ 0.48
VPS28-216ENST00000533806 KCNH5Q8NCM2 988 aa18.08■□□□□ 0.48
VPS28-216ENST00000533806 NRAPQ86VF7 1730 aa18.08■□□□□ 0.48
VPS28-216ENST00000533806 USP54Q70EL1 1684 aa18.08■□□□□ 0.48
VPS28-216ENST00000533806 GLI3P10071 1580 aa18.08■□□□□ 0.48
VPS28-216ENST00000533806 OVOS2A0A0J9YW53 1432 aa18.07■□□□□ 0.48
VPS28-216ENST00000533806 OVOS2Q6IE36 1432 aa18.07■□□□□ 0.48
VPS28-216ENST00000533806 AATKQ6ZMQ8 1374 aa18.07■□□□□ 0.48
VPS28-216ENST00000533806 LMO7Q8WWI1 1683 aa18.07■□□□□ 0.48
VPS28-216ENST00000533806 CAMTA1Q9Y6Y1 1673 aa18.07■□□□□ 0.48
VPS28-216ENST00000533806 NFAT5O94916 1531 aa18.07■□□□□ 0.48
VPS28-216ENST00000533806 MYOM1P52179 1685 aa18.06■□□□□ 0.48
VPS28-216ENST00000533806 SPATA31A5Q5VU36 1347 aa18.05■□□□□ 0.48
VPS28-216ENST00000533806 SPATA31A7Q8IWB4 1347 aa18.05■□□□□ 0.48
VPS28-216ENST00000533806 FYB1O15117 783 aa18.05■□□□□ 0.48
VPS28-216ENST00000533806 AXIN2Q9Y2T1 843 aa18.04■□□□□ 0.48
VPS28-216ENST00000533806 COL18A1P39060 1754 aa18.02■□□□□ 0.48
VPS28-216ENST00000533806 SPATA31A1Q5TZJ5 1347 aa18.01■□□□□ 0.47
VPS28-216ENST00000533806 COL5A2P05997 1499 aaPredicted RBP18.01■□□□□ 0.47
VPS28-216ENST00000533806 SOX12O15370 315 aa18■□□□□ 0.47
VPS28-216ENST00000533806 LARP1Q6PKG0 1096 aaKnown RBP18■□□□□ 0.47
VPS28-216ENST00000533806 KIF7Q2M1P5 1343 aa17.99■□□□□ 0.47
VPS28-216ENST00000533806 COG3Q96JB2 828 aa17.99■□□□□ 0.47
VPS28-216ENST00000533806 STRN4Q9NRL3 753 aa17.99■□□□□ 0.47
VPS28-216ENST00000533806 CCDC9Q9Y3X0 531 aaKnown RBP17.99■□□□□ 0.47
VPS28-216ENST00000533806 NSD3Q9BZ95 1437 aa17.98■□□□□ 0.47
VPS28-216ENST00000533806 EVA1CP58658 441 aa17.98■□□□□ 0.47
VPS28-216ENST00000533806 SEPT12Q8IYM1 358 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms