RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 PAK3O75914 559 aaPredicted RBP24.34■■□□□ 1.49
CPSF1-207ENST00000531727 CCDC125Q86Z20 511 aa24.32■■□□□ 1.48
CPSF1-207ENST00000531727 CCDC9Q9Y3X0 531 aaKnown RBP24.32■■□□□ 1.48
CPSF1-207ENST00000531727 POLR3AO14802 1390 aaPredicted RBP24.31■■□□□ 1.48
CPSF1-207ENST00000531727 SEPT12Q8IYM1 358 aa24.31■■□□□ 1.48
CPSF1-207ENST00000531727 ONECUT3O60422 494 aaPredicted RBP24.3■■□□□ 1.48
CPSF1-207ENST00000531727 BTG4Q9NY30 223 aa24.3■■□□□ 1.48
CPSF1-207ENST00000531727 CCDC61Q9Y6R9 512 aa24.3■■□□□ 1.48
CPSF1-207ENST00000531727 PHRF1Q9P1Y6 1649 aaKnown RBP24.29■■□□□ 1.48
CPSF1-207ENST00000531727 L3MBTL2Q969R5 705 aa24.29■■□□□ 1.48
CPSF1-207ENST00000531727 ACEP12821 1306 aa24.29■■□□□ 1.48
CPSF1-207ENST00000531727 CENPJQ9HC77 1338 aaPredicted RBP24.29■■□□□ 1.48
CPSF1-207ENST00000531727 QRICH2Q9H0J4 1663 aa24.28■■□□□ 1.48
CPSF1-207ENST00000531727 PLEKHG3A1L390 1219 aa24.27■■□□□ 1.48
CPSF1-207ENST00000531727 TRPM1Q7Z4N2 1603 aa24.26■■□□□ 1.47
CPSF1-207ENST00000531727 NBPF8Q3BBV2 869 aa24.26■■□□□ 1.47
CPSF1-207ENST00000531727 SIN3AQ96ST3 1273 aa24.25■■□□□ 1.47
CPSF1-207ENST00000531727 BLMP54132 1417 aaPredicted RBP24.25■■□□□ 1.47
CPSF1-207ENST00000531727 PRDM11Q9NQV5 511 aa24.24■■□□□ 1.47
CPSF1-207ENST00000531727 SRPK2P78362 688 aaKnown RBP24.23■■□□□ 1.47
CPSF1-207ENST00000531727 PPIP5K1Q6PFW1 1433 aa24.22■■□□□ 1.47
CPSF1-207ENST00000531727 KIAA0232Q92628 1395 aa24.22■■□□□ 1.47
CPSF1-207ENST00000531727 KRT27Q7Z3Y8 459 aa24.22■■□□□ 1.47
CPSF1-207ENST00000531727 FAM98CQ17RN3 349 aaKnown RBP24.21■■□□□ 1.47
CPSF1-207ENST00000531727 SPATA31A5Q5VU36 1347 aa24.2■■□□□ 1.46
CPSF1-207ENST00000531727 SPATA31A7Q8IWB4 1347 aa24.2■■□□□ 1.46
CPSF1-207ENST00000531727 NUTM2GQ5VZR2 741 aa24.2■■□□□ 1.46
CPSF1-207ENST00000531727 A0A0G2JS52 829 aa24.19■■□□□ 1.46
CPSF1-207ENST00000531727 MYT1Q01538 1121 aa24.19■■□□□ 1.46
CPSF1-207ENST00000531727 NEUROD1Q13562 356 aa24.19■■□□□ 1.46
CPSF1-207ENST00000531727 CABP2Q9NPB3 220 aa24.19■■□□□ 1.46
CPSF1-207ENST00000531727 NRKQ7Z2Y5 1582 aa24.19■■□□□ 1.46
CPSF1-207ENST00000531727 ABTB2Q8N961 1025 aa24.17■■□□□ 1.46
CPSF1-207ENST00000531727 ZRANB1Q9UGI0 708 aa24.17■■□□□ 1.46
CPSF1-207ENST00000531727 THSD7AQ9UPZ6 1657 aa24.17■■□□□ 1.46
CPSF1-207ENST00000531727 ZC3H6P61129 1189 aaKnown RBP24.16■■□□□ 1.46
CPSF1-207ENST00000531727 CHRNA2Q15822 529 aa24.16■■□□□ 1.46
CPSF1-207ENST00000531727 BRD4O60885 1362 aaPredicted RBP24.16■■□□□ 1.46
CPSF1-207ENST00000531727 SF3B2Q13435 895 aaKnown RBP24.15■■□□□ 1.46
CPSF1-207ENST00000531727 ROCK2O75116 1388 aaKnown RBP24.15■■□□□ 1.46
CPSF1-207ENST00000531727 USP19O94966 1318 aa24.14■■□□□ 1.46
CPSF1-207ENST00000531727 SPATA31A1Q5TZJ5 1347 aa24.12■■□□□ 1.45
CPSF1-207ENST00000531727 EVC2Q86UK5 1308 aa24.12■■□□□ 1.45
CPSF1-207ENST00000531727 DEFB132Q7Z7B7 95 aa24.12■■□□□ 1.45
CPSF1-207ENST00000531727 CABP1Q9NZU7 370 aa24.12■■□□□ 1.45
CPSF1-207ENST00000531727 CPDO75976 1380 aa24.12■■□□□ 1.45
CPSF1-207ENST00000531727 LMO7Q8WWI1 1683 aa24.11■■□□□ 1.45
CPSF1-207ENST00000531727 USP6P35125 1406 aa24.11■■□□□ 1.45
CPSF1-207ENST00000531727 NLRP13Q86W25 1043 aa24.11■■□□□ 1.45
CPSF1-207ENST00000531727 STRN4Q9NRL3 753 aa24.11■■□□□ 1.45
CPSF1-207ENST00000531727 CAMTA1Q9Y6Y1 1673 aa24.09■■□□□ 1.45
CPSF1-207ENST00000531727 SSH2Q76I76 1423 aa24.09■■□□□ 1.45
CPSF1-207ENST00000531727 RGPD1P0DJD0 1748 aa24.07■■□□□ 1.44
CPSF1-207ENST00000531727 GCP02774 474 aa24.07■■□□□ 1.44
CPSF1-207ENST00000531727 EVA1CP58658 441 aa24.07■■□□□ 1.44
CPSF1-207ENST00000531727 PIK3C2AO00443 1686 aa24.05■■□□□ 1.44
CPSF1-207ENST00000531727 SLIT3O75094 1523 aa24.05■■□□□ 1.44
CPSF1-207ENST00000531727 AKAP12Q02952 1782 aa24.04■■□□□ 1.44
CPSF1-207ENST00000531727 FAM182BQ5T319 152 aa24.04■■□□□ 1.44
CPSF1-207ENST00000531727 BAG6P46379 1132 aa24.03■■□□□ 1.44
CPSF1-207ENST00000531727 NLRP6P59044 892 aa24.03■■□□□ 1.44
CPSF1-207ENST00000531727 LARP1Q6PKG0 1096 aaKnown RBP24.02■■□□□ 1.44
CPSF1-207ENST00000531727 BARGINQ6ZT62 677 aa24.02■■□□□ 1.44
CPSF1-207ENST00000531727 USP35Q9P2H5 1018 aa24.02■■□□□ 1.44
CPSF1-207ENST00000531727 TNS1Q9HBL0 1735 aaKnown RBP24.01■■□□□ 1.43
CPSF1-207ENST00000531727 COL5A2P05997 1499 aaPredicted RBP24.01■■□□□ 1.43
CPSF1-207ENST00000531727 ZNF692Q9BU19 519 aaPredicted RBP24■■□□□ 1.43
CPSF1-207ENST00000531727 SBNO2Q9Y2G9 1366 aa24■■□□□ 1.43
CPSF1-207ENST00000531727 SRCAPQ6ZRS2 3230 aa23.99■■□□□ 1.43
CPSF1-207ENST00000531727 TCP11L2Q8N4U5 519 aa23.98■■□□□ 1.43
CPSF1-207ENST00000531727 DISP2A7MBM2 1401 aa23.97■■□□□ 1.43
CPSF1-207ENST00000531727 CPSF1Q10570 1443 aaKnown RBP23.97■■□□□ 1.43
CPSF1-207ENST00000531727 AATKQ6ZMQ8 1374 aa23.97■■□□□ 1.43
CPSF1-207ENST00000531727 TTC21BQ7Z4L5 1316 aa23.97■■□□□ 1.43
CPSF1-207ENST00000531727 TONSLQ96HA7 1378 aa23.97■■□□□ 1.43
CPSF1-207ENST00000531727 CARD11Q9BXL7 1154 aa23.97■■□□□ 1.43
CPSF1-207ENST00000531727 THRAP3Q9Y2W1 955 aaKnown RBP23.97■■□□□ 1.43
CPSF1-207ENST00000531727 FAM196AQ6ZSG2 479 aa23.96■■□□□ 1.43
CPSF1-207ENST00000531727 COL18A1P39060 1754 aa23.96■■□□□ 1.43
CPSF1-207ENST00000531727 CRB1P82279 1406 aa23.95■■□□□ 1.42
CPSF1-207ENST00000531727 TTC21AQ8NDW8 1320 aa23.95■■□□□ 1.42
CPSF1-207ENST00000531727 ZBTB7CA1YPR0 619 aa23.95■■□□□ 1.42
CPSF1-207ENST00000531727 MON2Q7Z3U7 1717 aa23.95■■□□□ 1.42
CPSF1-207ENST00000531727 PARP4Q9UKK3 1724 aaKnown RBP23.95■■□□□ 1.42
CPSF1-207ENST00000531727 EN1Q05925 392 aaPredicted RBP23.94■■□□□ 1.42
CPSF1-207ENST00000531727 PDE3BQ13370 1112 aa23.94■■□□□ 1.42
CPSF1-207ENST00000531727 KTN1Q86UP2 1357 aaKnown RBP23.92■■□□□ 1.42
CPSF1-207ENST00000531727 TRIM37O94972 964 aa23.91■■□□□ 1.42
CPSF1-207ENST00000531727 KCNH5Q8NCM2 988 aa23.91■■□□□ 1.42
CPSF1-207ENST00000531727 ARHGEF25Q86VW2 580 aa23.88■■□□□ 1.41
CPSF1-207ENST00000531727 NFAT5O94916 1531 aa23.88■■□□□ 1.41
CPSF1-207ENST00000531727 LRP5O75197 1615 aa23.88■■□□□ 1.41
CPSF1-207ENST00000531727 TRIM26Q12899 539 aaPredicted RBP23.87■■□□□ 1.41
CPSF1-207ENST00000531727 AXIN2Q9Y2T1 843 aa23.87■■□□□ 1.41
CPSF1-207ENST00000531727 RGPD5Q99666 1765 aa23.87■■□□□ 1.41
CPSF1-207ENST00000531727 CD163L1Q9NR16 1453 aa23.87■■□□□ 1.41
CPSF1-207ENST00000531727 WNK3Q9BYP7 1800 aa23.87■■□□□ 1.41
CPSF1-207ENST00000531727 WDR17Q8IZU2 1322 aa23.86■■□□□ 1.41
CPSF1-207ENST00000531727 USP54Q70EL1 1684 aa23.86■■□□□ 1.41
CPSF1-207ENST00000531727 LRRC37A3O60309 1634 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms