RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 SHANK2Q9UPX8 1470 aa17.42■□□□□ 0.38
PCF11-204ENST00000530660 NOLC1Q14978 699 aaKnown RBP eCLIP17.42■□□□□ 0.381e-11■□□□□ 9.8
PCF11-204ENST00000530660 CERS3Q8IU89 383 aa17.42■□□□□ 0.38
PCF11-204ENST00000530660 PLA2R1Q13018 1463 aa17.42■□□□□ 0.38
PCF11-204ENST00000530660 NSFL1CQ9UNZ2 370 aaKnown RBP17.41■□□□□ 0.38
PCF11-204ENST00000530660 LRSAM1Q6UWE0 723 aa17.41■□□□□ 0.38
PCF11-204ENST00000530660 WWC1Q8IX03 1113 aa17.41■□□□□ 0.38
PCF11-204ENST00000530660 ADCY10Q96PN6 1610 aa17.4■□□□□ 0.38
PCF11-204ENST00000530660 RRP7AQ9Y3A4 280 aaKnown RBP17.39■□□□□ 0.38
PCF11-204ENST00000530660 TTC12Q9H892 705 aaPredicted RBP17.39■□□□□ 0.37
PCF11-204ENST00000530660 ZFP91Q96JP5 570 aaPredicted RBP17.38■□□□□ 0.37
PCF11-204ENST00000530660 LAMC1P11047 1609 aa17.38■□□□□ 0.37
PCF11-204ENST00000530660 PIBF1Q8WXW3 757 aa17.38■□□□□ 0.37
PCF11-204ENST00000530660 ABCC10Q5T3U5 1492 aa17.38■□□□□ 0.37
PCF11-204ENST00000530660 MVPQ14764 893 aaKnown RBP17.37■□□□□ 0.37
PCF11-204ENST00000530660 PIK3C2GO75747 1445 aa17.37■□□□□ 0.37
PCF11-204ENST00000530660 PLEKHD1A6NEE1 506 aa17.36■□□□□ 0.37
PCF11-204ENST00000530660 LNPKQ9C0E8 428 aa17.36■□□□□ 0.37
PCF11-204ENST00000530660 KIF16BQ96L93 1317 aa17.35■□□□□ 0.37
PCF11-204ENST00000530660 ASXL1Q8IXJ9 1541 aa17.34■□□□□ 0.37
PCF11-204ENST00000530660 RIOK3O14730 519 aaKnown RBP17.34■□□□□ 0.37
PCF11-204ENST00000530660 MYO5CQ9NQX4 1742 aa17.34■□□□□ 0.37
PCF11-204ENST00000530660 FOXD4L5Q5VV16 416 aaPredicted RBP17.34■□□□□ 0.37
PCF11-204ENST00000530660 FOXD4L4Q8WXT5 416 aaPredicted RBP17.34■□□□□ 0.37
PCF11-204ENST00000530660 ABCC2Q92887 1545 aa17.33■□□□□ 0.37
PCF11-204ENST00000530660 AEBP1Q8IUX7 1158 aa17.33■□□□□ 0.36
PCF11-204ENST00000530660 DNAJC5BQ9UF47 199 aa17.33■□□□□ 0.36
PCF11-204ENST00000530660 SLFN14P0C7P3 912 aa17.32■□□□□ 0.36
PCF11-204ENST00000530660 ANKRD7Q92527 254 aa17.32■□□□□ 0.36
PCF11-204ENST00000530660 ARHGAP31Q2M1Z3 1444 aa17.32■□□□□ 0.36
PCF11-204ENST00000530660 CCDC141Q6ZP82 1450 aa17.32■□□□□ 0.36
PCF11-204ENST00000530660 FKBP5Q13451 457 aaPredicted RBP17.32■□□□□ 0.36
PCF11-204ENST00000530660 CYP2E1P05181 493 aaPredicted RBP17.31■□□□□ 0.36
PCF11-204ENST00000530660 NUCB2P80303 420 aa17.31■□□□□ 0.36
PCF11-204ENST00000530660 EIF2AK4Q9P2K8 1649 aaKnown RBP17.31■□□□□ 0.36
PCF11-204ENST00000530660 ZBTB9Q96C00 473 aa17.31■□□□□ 0.36
PCF11-204ENST00000530660 OGFRQ9NZT2 677 aa17.31■□□□□ 0.36
PCF11-204ENST00000530660 PLXNC1O60486 1568 aa17.3■□□□□ 0.36
PCF11-204ENST00000530660 CAPN2P17655 700 aa17.3■□□□□ 0.36
PCF11-204ENST00000530660 DZIP1LQ8IYY4 767 aaKnown RBP17.3■□□□□ 0.36
PCF11-204ENST00000530660 TRERF1Q96PN7 1200 aa17.3■□□□□ 0.36
PCF11-204ENST00000530660 ZGPATQ8N5A5 531 aaKnown RBP17.29■□□□□ 0.36
PCF11-204ENST00000530660 DNAJC2Q99543 621 aaKnown RBP17.29■□□□□ 0.36
PCF11-204ENST00000530660 USP25Q9UHP3 1055 aa17.29■□□□□ 0.36
PCF11-204ENST00000530660 IRX3P78415 501 aaPredicted RBP17.29■□□□□ 0.36
PCF11-204ENST00000530660 HDAC1Q13547 482 aaPredicted RBP17.29■□□□□ 0.36
PCF11-204ENST00000530660 FEZ1Q99689 392 aa17.29■□□□□ 0.36
PCF11-204ENST00000530660 TBC1D9Q6ZT07 1266 aa17.29■□□□□ 0.36
PCF11-204ENST00000530660 ITPRIPQ8IWB1 547 aa17.29■□□□□ 0.36
PCF11-204ENST00000530660 SYNJ2O15056 1496 aa17.29■□□□□ 0.36
PCF11-204ENST00000530660 NUP160Q12769 1436 aa17.29■□□□□ 0.36
PCF11-204ENST00000530660 MAGI1Q96QZ7 1491 aaPredicted RBP17.28■□□□□ 0.36
PCF11-204ENST00000530660 ERICH4A6NGS2 130 aa17.28■□□□□ 0.36
PCF11-204ENST00000530660 ZDHHC9Q9Y397 364 aa17.28■□□□□ 0.36
PCF11-204ENST00000530660 TRIM6-TRIM34B2RNG4 842 aa17.27■□□□□ 0.36
PCF11-204ENST00000530660 TRIM34Q9BYJ4 488 aa17.27■□□□□ 0.36
PCF11-204ENST00000530660 TSPY26PQ9H489 355 aa17.27■□□□□ 0.36
PCF11-204ENST00000530660 SECISBP2LQ93073 1101 aaKnown RBP17.27■□□□□ 0.36
PCF11-204ENST00000530660 TIGD1Q96MW7 591 aa17.27■□□□□ 0.36
PCF11-204ENST00000530660 GABPB1Q06547 395 aaPredicted RBP17.27■□□□□ 0.35
PCF11-204ENST00000530660 CDCA8Q53HL2 280 aa17.27■□□□□ 0.35
PCF11-204ENST00000530660 ZKSCAN2Q63HK3 967 aa17.27■□□□□ 0.35
PCF11-204ENST00000530660 SPTLC3Q9NUV7 552 aa17.27■□□□□ 0.35
PCF11-204ENST00000530660 SYNMO15061 1565 aa17.27■□□□□ 0.35
PCF11-204ENST00000530660 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.25■□□□□ 0.35
PCF11-204ENST00000530660 CTNNA3Q9UI47 895 aa17.25■□□□□ 0.35
PCF11-204ENST00000530660 GRIN2AQ12879 1464 aa17.25■□□□□ 0.35
PCF11-204ENST00000530660 RNF17Q9BXT8 1623 aaKnown RBP17.25■□□□□ 0.35
PCF11-204ENST00000530660 CCDC66A2RUB6 948 aa17.24■□□□□ 0.35
PCF11-204ENST00000530660 NUCB1Q02818 461 aa17.24■□□□□ 0.35
PCF11-204ENST00000530660 NCBP1Q09161 790 aaKnown RBP17.24■□□□□ 0.35
PCF11-204ENST00000530660 NAA30Q147X3 362 aaPredicted RBP17.24■□□□□ 0.35
PCF11-204ENST00000530660 RGS22Q8NE09 1264 aa17.24■□□□□ 0.35
PCF11-204ENST00000530660 SLC20A2Q08357 652 aa17.24■□□□□ 0.35
PCF11-204ENST00000530660 ARHGEF5Q12774 1597 aa17.24■□□□□ 0.35
PCF11-204ENST00000530660 TERF2Q15554 542 aa17.24■□□□□ 0.35
PCF11-204ENST00000530660 BMP2KLQ5H9B9 411 aa17.24■□□□□ 0.35
PCF11-204ENST00000530660 ADCY5O95622 1261 aa17.23■□□□□ 0.35
PCF11-204ENST00000530660 TRIM27P14373 513 aa17.23■□□□□ 0.35
PCF11-204ENST00000530660 CHAF1AQ13111 956 aaPredicted RBP17.23■□□□□ 0.35
PCF11-204ENST00000530660 CHD1LQ86WJ1 897 aa17.23■□□□□ 0.35
PCF11-204ENST00000530660 DIAPH3Q9NSV4 1193 aa17.23■□□□□ 0.35
PCF11-204ENST00000530660 NPC1L1Q9UHC9 1359 aa17.23■□□□□ 0.35
PCF11-204ENST00000530660 SHROOM2Q13796 1616 aa17.23■□□□□ 0.35
PCF11-204ENST00000530660 CTIFO43310 598 aaKnown RBP17.23■□□□□ 0.35
PCF11-204ENST00000530660 TEX2Q8IWB9 1127 aa17.23■□□□□ 0.35
PCF11-204ENST00000530660 CARD14Q9BXL6 1004 aa17.23■□□□□ 0.35
PCF11-204ENST00000530660 ATP10BO94823 1461 aa17.22■□□□□ 0.35
PCF11-204ENST00000530660 NGEFQ8N5V2 710 aa17.22■□□□□ 0.35
PCF11-204ENST00000530660 TCP11L2Q8N4U5 519 aa17.22■□□□□ 0.35
PCF11-204ENST00000530660 PYCARDQ9ULZ3 195 aa17.22■□□□□ 0.35
PCF11-204ENST00000530660 PLCB2Q00722 1185 aa17.21■□□□□ 0.35
PCF11-204ENST00000530660 CHMP4CQ96CF2 233 aa17.21■□□□□ 0.35
PCF11-204ENST00000530660 MYOM1P52179 1685 aa17.21■□□□□ 0.35
PCF11-204ENST00000530660 FOXD4L6Q3SYB3 417 aaPredicted RBP17.21■□□□□ 0.35
PCF11-204ENST00000530660 FOXD4L3Q6VB84 417 aaPredicted RBP17.21■□□□□ 0.35
PCF11-204ENST00000530660 KLHL34Q8N239 644 aa17.21■□□□□ 0.35
PCF11-204ENST00000530660 DDX41Q9UJV9 622 aaKnown RBP17.21■□□□□ 0.35
PCF11-204ENST00000530660 TPRNQ4KMQ1 711 aa17.2■□□□□ 0.34
PCF11-204ENST00000530660 ANKRD45Q5TZF3 282 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms