RNA–Protein interactions for RNA: ENST00000529526.5

CTNND1-220, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 6,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-220ENST00000529526 OLFM4Q6UX06 510 aa9.77□□□□□ -0.85
CTNND1-220ENST00000529526 PRPF40AO75400 957 aaKnown RBP9.77□□□□□ -0.85
CTNND1-220ENST00000529526 TTLL5Q6EMB2 1281 aa9.77□□□□□ -0.85
CTNND1-220ENST00000529526 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.77□□□□□ -0.85
CTNND1-220ENST00000529526 SIL1Q9H173 461 aa9.77□□□□□ -0.85
CTNND1-220ENST00000529526 AAMPQ13685 434 aa9.76□□□□□ -0.85
CTNND1-220ENST00000529526 KIF6Q6ZMV9 814 aa9.76□□□□□ -0.85
CTNND1-220ENST00000529526 BRMS1Q9HCU9 246 aa9.76□□□□□ -0.85
CTNND1-220ENST00000529526 TRAK2O60296 914 aa9.76□□□□□ -0.85
CTNND1-220ENST00000529526 PLEKHO1Q53GL0 409 aaPredicted RBP9.76□□□□□ -0.85
CTNND1-220ENST00000529526 SULT6B1Q6IMI4 303 aa9.76□□□□□ -0.85
CTNND1-220ENST00000529526 SDF4Q9BRK5 362 aa9.76□□□□□ -0.85
CTNND1-220ENST00000529526 CWC22Q9HCG8 908 aaKnown RBP9.76□□□□□ -0.85
CTNND1-220ENST00000529526 CABP1Q9NZU7 370 aa9.76□□□□□ -0.85
CTNND1-220ENST00000529526 R3HCC1Q9Y3T6 440 aaKnown RBP9.76□□□□□ -0.85
CTNND1-220ENST00000529526 GNAI2P04899 355 aa9.76□□□□□ -0.85
CTNND1-220ENST00000529526 TTC39AQ5SRH9 613 aa9.76□□□□□ -0.85
CTNND1-220ENST00000529526 MNS1Q8NEH6 495 aa9.76□□□□□ -0.85
CTNND1-220ENST00000529526 STK3Q13188 491 aa9.75□□□□□ -0.85
CTNND1-220ENST00000529526 IKQ13123 557 aaPredicted RBP9.75□□□□□ -0.85
CTNND1-220ENST00000529526 TBC1D2BQ9UPU7 963 aa9.75□□□□□ -0.85
CTNND1-220ENST00000529526 PRG4Q92954 1404 aaPredicted RBP9.75□□□□□ -0.85
CTNND1-220ENST00000529526 NAT10Q9H0A0 1025 aaKnown RBP9.74□□□□□ -0.85
CTNND1-220ENST00000529526 CCDC39Q9UFE4 941 aa9.74□□□□□ -0.85
CTNND1-220ENST00000529526 EPS15P42566 896 aa9.74□□□□□ -0.85
CTNND1-220ENST00000529526 C9orf84Q5VXU9 1444 aa9.74□□□□□ -0.85
CTNND1-220ENST00000529526 SMG6Q86US8 1419 aaKnown RBP9.74□□□□□ -0.85
CTNND1-220ENST00000529526 SYNJ2O15056 1496 aa9.74□□□□□ -0.85
CTNND1-220ENST00000529526 MYL6BP14649 208 aa9.74□□□□□ -0.85
CTNND1-220ENST00000529526 CNNM1Q9NRU3 951 aa9.74□□□□□ -0.85
CTNND1-220ENST00000529526 FIBPO43427 364 aa9.74□□□□□ -0.85
CTNND1-220ENST00000529526 SMC2O95347 1197 aa9.74□□□□□ -0.85
CTNND1-220ENST00000529526 XBP1P17861 261 aa9.74□□□□□ -0.85
CTNND1-220ENST00000529526 FMNL2Q96PY5 1086 aa9.74□□□□□ -0.85
CTNND1-220ENST00000529526 MRE11P49959 708 aa9.73□□□□□ -0.85
CTNND1-220ENST00000529526 TEX35Q5T0J7 233 aa9.73□□□□□ -0.85
CTNND1-220ENST00000529526 HDGFL1Q5TGJ6 251 aa9.73□□□□□ -0.85
CTNND1-220ENST00000529526 PROSER2Q86WR7 435 aaPredicted RBP9.73□□□□□ -0.85
CTNND1-220ENST00000529526 GCC1Q96CN9 775 aa9.73□□□□□ -0.85
CTNND1-220ENST00000529526 TRIM5Q9C035 493 aa9.73□□□□□ -0.85
CTNND1-220ENST00000529526 SYNJ1O43426 1573 aa9.73□□□□□ -0.85
CTNND1-220ENST00000529526 CT47A1Q5JQC4 288 aaPredicted RBP9.73□□□□□ -0.85
CTNND1-220ENST00000529526 TSPY26PQ9H489 355 aa9.73□□□□□ -0.85
CTNND1-220ENST00000529526 GRIN2BQ13224 1484 aa9.73□□□□□ -0.85
CTNND1-220ENST00000529526 RRS1Q15050 365 aaKnown RBP9.73□□□□□ -0.85
CTNND1-220ENST00000529526 CCDC184Q52MB2 194 aa9.73□□□□□ -0.85
CTNND1-220ENST00000529526 SART3Q15020 963 aaKnown RBP9.73□□□□□ -0.85
CTNND1-220ENST00000529526 RUFY1Q96T51 708 aa9.73□□□□□ -0.85
CTNND1-220ENST00000529526 KIAA1107Q9UPP5 1409 aa9.73□□□□□ -0.85
CTNND1-220ENST00000529526 DDX54Q8TDD1 881 aaKnown RBP9.72□□□□□ -0.85
CTNND1-220ENST00000529526 ERBINQ96RT1 1412 aa9.72□□□□□ -0.85
CTNND1-220ENST00000529526 BRPF1P55201 1214 aaPredicted RBP9.72□□□□□ -0.85
CTNND1-220ENST00000529526 CABP4P57796 275 aa9.72□□□□□ -0.85
CTNND1-220ENST00000529526 TATP17735 454 aaPredicted RBP9.72□□□□□ -0.85
CTNND1-220ENST00000529526 RABEP1Q15276 862 aa9.72□□□□□ -0.85
CTNND1-220ENST00000529526 SPC24Q8NBT2 197 aa9.72□□□□□ -0.85
CTNND1-220ENST00000529526 LRRCC1Q9C099 1032 aa9.72□□□□□ -0.85
CTNND1-220ENST00000529526 EHBP1L1Q8N3D4 1523 aa9.72□□□□□ -0.85
CTNND1-220ENST00000529526 ERC1Q8IUD2 1116 aa9.72□□□□□ -0.85
CTNND1-220ENST00000529526 CAGE1Q8TC20 777 aa9.72□□□□□ -0.85
CTNND1-220ENST00000529526 CCDC158Q5M9N0 1113 aa9.71□□□□□ -0.85
CTNND1-220ENST00000529526 CNKSR2Q8WXI2 1034 aa9.71□□□□□ -0.85
CTNND1-220ENST00000529526 SCAPERQ9BY12 1400 aa9.71□□□□□ -0.85
CTNND1-220ENST00000529526 KINO60870 393 aaKnown RBP9.71□□□□□ -0.85
CTNND1-220ENST00000529526 PDE3AQ14432 1141 aa9.71□□□□□ -0.85
CTNND1-220ENST00000529526 HIP1O00291 1037 aa9.71□□□□□ -0.86
CTNND1-220ENST00000529526 BRPF3Q9ULD4 1205 aa9.71□□□□□ -0.86
CTNND1-220ENST00000529526 ZFYVE27Q5T4F4 411 aa9.7□□□□□ -0.86
CTNND1-220ENST00000529526 MPNDQ8N594 471 aa9.7□□□□□ -0.86
CTNND1-220ENST00000529526 ARGLU1Q9NWB6 273 aaPredicted RBP9.7□□□□□ -0.86
CTNND1-220ENST00000529526 ERICH3Q5RHP9 1530 aa9.7□□□□□ -0.86
CTNND1-220ENST00000529526 OFD1O75665 1012 aa9.7□□□□□ -0.86
CTNND1-220ENST00000529526 ZNF530Q6P9A1 599 aaPredicted RBP9.7□□□□□ -0.86
CTNND1-220ENST00000529526 LETM1O95202 739 aaPredicted RBP9.7□□□□□ -0.86
CTNND1-220ENST00000529526 AK7Q96M32 723 aa9.7□□□□□ -0.86
CTNND1-220ENST00000529526 CCT4P50991 539 aaKnown RBP9.7□□□□□ -0.86
CTNND1-220ENST00000529526 XPCQ01831 940 aaPredicted RBP9.7□□□□□ -0.86
CTNND1-220ENST00000529526 SKIDA1Q1XH10 827 aa9.7□□□□□ -0.86
CTNND1-220ENST00000529526 ODF2Q5BJF6 829 aa9.7□□□□□ -0.86
CTNND1-220ENST00000529526 MVPQ14764 893 aaKnown RBP9.7□□□□□ -0.86
CTNND1-220ENST00000529526 STK38Q15208 465 aa9.7□□□□□ -0.86
CTNND1-220ENST00000529526 TOM1L2Q6ZVM7 507 aa9.7□□□□□ -0.86
CTNND1-220ENST00000529526 PHF23Q9BUL5 403 aaPredicted RBP9.7□□□□□ -0.86
CTNND1-220ENST00000529526 NESP48681 1621 aa9.7□□□□□ -0.86
CTNND1-220ENST00000529526 ATP2B2Q01814 1243 aa9.69□□□□□ -0.86
CTNND1-220ENST00000529526 AEBP2Q6ZN18 517 aaPredicted RBP9.69□□□□□ -0.86
CTNND1-220ENST00000529526 SPINK5Q9NQ38 1064 aaPredicted RBP9.69□□□□□ -0.86
CTNND1-220ENST00000529526 RTEL1-TNFRSF6BF6WH68 1400 aa9.69□□□□□ -0.86
CTNND1-220ENST00000529526 NUTM2BA6NNL0 878 aaPredicted RBP9.69□□□□□ -0.86
CTNND1-220ENST00000529526 NUTM2EB1AL46 878 aaPredicted RBP9.69□□□□□ -0.86
CTNND1-220ENST00000529526 CALRP27797 417 aaKnown RBP9.69□□□□□ -0.86
CTNND1-220ENST00000529526 NUTM2AQ8IVF1 878 aaPredicted RBP9.69□□□□□ -0.86
CTNND1-220ENST00000529526 PNISRQ8TF01 805 aaKnown RBP9.69□□□□□ -0.86
CTNND1-220ENST00000529526 CDK5RAP3Q96JB5 506 aa9.69□□□□□ -0.86
CTNND1-220ENST00000529526 CYP46A1Q9Y6A2 500 aa9.69□□□□□ -0.86
CTNND1-220ENST00000529526 HFM1A2PYH4 1435 aa9.69□□□□□ -0.86
CTNND1-220ENST00000529526 HSP90AB2PQ58FF8 381 aa9.69□□□□□ -0.86
CTNND1-220ENST00000529526 SRCIN1Q9C0H9 1055 aa9.69□□□□□ -0.86
CTNND1-220ENST00000529526 ATF7IPQ6VMQ6 1270 aa9.69□□□□□ -0.86
CTNND1-220ENST00000529526 AACSQ86V21 672 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms