RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 LRP6O75581 1613 aa7.52□□□□□ -1.2
HMGB1P40-201ENST00000525121 COL22A1Q8NFW1 1626 aaPredicted RBP7.52□□□□□ -1.2
HMGB1P40-201ENST00000525121 KTN1Q86UP2 1357 aaKnown RBP7.52□□□□□ -1.21
HMGB1P40-201ENST00000525121 NGLY1Q96IV0 654 aa7.52□□□□□ -1.21
HMGB1P40-201ENST00000525121 C8orf37Q96NL8 207 aa7.52□□□□□ -1.21
HMGB1P40-201ENST00000525121 TESK2Q96S53 571 aa7.52□□□□□ -1.21
HMGB1P40-201ENST00000525121 USP6P35125 1406 aa7.52□□□□□ -1.21
HMGB1P40-201ENST00000525121 ABTB2Q8N961 1025 aa7.51□□□□□ -1.21
HMGB1P40-201ENST00000525121 TTC21AQ8NDW8 1320 aa7.51□□□□□ -1.21
HMGB1P40-201ENST00000525121 TRPM3Q9HCF6 1732 aaPredicted RBP7.5□□□□□ -1.21
HMGB1P40-201ENST00000525121 HSPA5P11021 654 aaKnown RBP7.5□□□□□ -1.21
HMGB1P40-201ENST00000525121 NLRP13Q86W25 1043 aa7.5□□□□□ -1.21
HMGB1P40-201ENST00000525121 POLR3GLQ9BT43 218 aa7.5□□□□□ -1.21
HMGB1P40-201ENST00000525121 AFF2P51816 1311 aa7.5□□□□□ -1.21
HMGB1P40-201ENST00000525121 NLRP6P59044 892 aa7.49□□□□□ -1.21
HMGB1P40-201ENST00000525121 NUTM2GQ5VZR2 741 aa7.49□□□□□ -1.21
HMGB1P40-201ENST00000525121 CABLES1Q8TDN4 633 aa7.49□□□□□ -1.21
HMGB1P40-201ENST00000525121 USP21Q9UK80 565 aa7.49□□□□□ -1.21
HMGB1P40-201ENST00000525121 CPSF1Q10570 1443 aaKnown RBP7.49□□□□□ -1.21
HMGB1P40-201ENST00000525121 EDC4Q6P2E9 1401 aaKnown RBP7.49□□□□□ -1.21
HMGB1P40-201ENST00000525121 ANKRD36BQ8N2N9 1353 aa7.48□□□□□ -1.21
HMGB1P40-201ENST00000525121 ALS2Q96Q42 1657 aa7.48□□□□□ -1.21
HMGB1P40-201ENST00000525121 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.48□□□□□ -1.21
HMGB1P40-201ENST00000525121 SLC12A5Q9H2X9 1139 aa7.48□□□□□ -1.21
HMGB1P40-201ENST00000525121 PRDM11Q9NQV5 511 aa7.48□□□□□ -1.21
HMGB1P40-201ENST00000525121 TTC21BQ7Z4L5 1316 aa7.48□□□□□ -1.21
HMGB1P40-201ENST00000525121 A0A1W2PP64 1363 aa7.47□□□□□ -1.21
HMGB1P40-201ENST00000525121 KCNH5Q8NCM2 988 aa7.47□□□□□ -1.21
HMGB1P40-201ENST00000525121 TRPC5Q9UL62 973 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P40-201ENST00000525121 USP19O94966 1318 aa7.47□□□□□ -1.21
HMGB1P40-201ENST00000525121 SSH2Q76I76 1423 aa7.46□□□□□ -1.21
HMGB1P40-201ENST00000525121 ZBTB7CA1YPR0 619 aa7.46□□□□□ -1.22
HMGB1P40-201ENST00000525121 RXRBP28702 533 aa7.46□□□□□ -1.22
HMGB1P40-201ENST00000525121 ZEB1P37275 1124 aaPredicted RBP7.46□□□□□ -1.22
HMGB1P40-201ENST00000525121 FNBP4Q8N3X1 1017 aaPredicted RBP7.46□□□□□ -1.22
HMGB1P40-201ENST00000525121 CCDC9Q9Y3X0 531 aaKnown RBP7.46□□□□□ -1.22
HMGB1P40-201ENST00000525121 ABCA3Q99758 1704 aa7.46□□□□□ -1.22
HMGB1P40-201ENST00000525121 AKAP12Q02952 1782 aa7.46□□□□□ -1.22
HMGB1P40-201ENST00000525121 NRKQ7Z2Y5 1582 aa7.46□□□□□ -1.22
HMGB1P40-201ENST00000525121 KIAA0232Q92628 1395 aa7.46□□□□□ -1.22
HMGB1P40-201ENST00000525121 CD163L1Q9NR16 1453 aa7.45□□□□□ -1.22
HMGB1P40-201ENST00000525121 MON2Q7Z3U7 1717 aa7.45□□□□□ -1.22
HMGB1P40-201ENST00000525121 GCP02774 474 aa7.45□□□□□ -1.22
HMGB1P40-201ENST00000525121 ZC3H6P61129 1189 aaKnown RBP7.45□□□□□ -1.22
HMGB1P40-201ENST00000525121 POTEAQ6S8J7 498 aa7.45□□□□□ -1.22
HMGB1P40-201ENST00000525121 UNC5CLQ8IV45 518 aa7.45□□□□□ -1.22
HMGB1P40-201ENST00000525121 COG3Q96JB2 828 aa7.45□□□□□ -1.22
HMGB1P40-201ENST00000525121 QTRT2Q9H974 415 aaKnown RBP7.45□□□□□ -1.22
HMGB1P40-201ENST00000525121 RGS17Q9UGC6 210 aaPredicted RBP7.45□□□□□ -1.22
HMGB1P40-201ENST00000525121 PHRF1Q9P1Y6 1649 aaKnown RBP7.45□□□□□ -1.22
HMGB1P40-201ENST00000525121 COL14A1Q05707 1796 aaKnown RBP7.44□□□□□ -1.22
HMGB1P40-201ENST00000525121 SLIT2O94813 1529 aa7.44□□□□□ -1.22
HMGB1P40-201ENST00000525121 SOX12O15370 315 aa7.44□□□□□ -1.22
HMGB1P40-201ENST00000525121 EVA1CP58658 441 aa7.44□□□□□ -1.22
HMGB1P40-201ENST00000525121 RBM6P78332 1123 aaKnown RBP7.44□□□□□ -1.22
HMGB1P40-201ENST00000525121 NME9Q86XW9 330 aa7.44□□□□□ -1.22
HMGB1P40-201ENST00000525121 BTG4Q9NY30 223 aa7.44□□□□□ -1.22
HMGB1P40-201ENST00000525121 PIK3C2AO00443 1686 aa7.44□□□□□ -1.22
HMGB1P40-201ENST00000525121 CPDO75976 1380 aa7.44□□□□□ -1.22
HMGB1P40-201ENST00000525121 USP31Q70CQ4 1352 aa7.44□□□□□ -1.22
HMGB1P40-201ENST00000525121 MARF1Q9Y4F3 1742 aaKnown RBP7.44□□□□□ -1.22
HMGB1P40-201ENST00000525121 NSD3Q9BZ95 1437 aa7.44□□□□□ -1.22
HMGB1P40-201ENST00000525121 SLIT3O75094 1523 aa7.43□□□□□ -1.22
HMGB1P40-201ENST00000525121 FAM83GA6ND36 823 aa7.43□□□□□ -1.22
HMGB1P40-201ENST00000525121 CHRNA2Q15822 529 aa7.43□□□□□ -1.22
HMGB1P40-201ENST00000525121 CGNL1Q0VF96 1302 aa7.43□□□□□ -1.22
HMGB1P40-201ENST00000525121 ATRNO75882 1429 aa7.43□□□□□ -1.22
HMGB1P40-201ENST00000525121 BCL9LQ86UU0 1499 aa7.43□□□□□ -1.22
HMGB1P40-201ENST00000525121 CDK12Q9NYV4 1490 aaPredicted RBP7.43□□□□□ -1.22
HMGB1P40-201ENST00000525121 PLCH1Q4KWH8 1693 aa7.42□□□□□ -1.22
HMGB1P40-201ENST00000525121 NWD2Q9ULI1 1742 aa7.42□□□□□ -1.22
HMGB1P40-201ENST00000525121 CRYBG1Q9Y4K1 1723 aa7.42□□□□□ -1.22
HMGB1P40-201ENST00000525121 A0A0G2JS52 829 aa7.42□□□□□ -1.22
HMGB1P40-201ENST00000525121 MYT1Q01538 1121 aa7.42□□□□□ -1.22
HMGB1P40-201ENST00000525121 VPS72Q15906 364 aa7.42□□□□□ -1.22
HMGB1P40-201ENST00000525121 ILDR2Q71H61 639 aa7.42□□□□□ -1.22
HMGB1P40-201ENST00000525121 GJD4Q96KN9 370 aaPredicted RBP7.42□□□□□ -1.22
HMGB1P40-201ENST00000525121 STRN4Q9NRL3 753 aa7.42□□□□□ -1.22
HMGB1P40-201ENST00000525121 OVOS2A0A0J9YW53 1432 aa7.42□□□□□ -1.22
HMGB1P40-201ENST00000525121 OVOS2Q6IE36 1432 aa7.42□□□□□ -1.22
HMGB1P40-201ENST00000525121 MYOM1P52179 1685 aa7.41□□□□□ -1.22
HMGB1P40-201ENST00000525121 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.41□□□□□ -1.22
HMGB1P40-201ENST00000525121 CSB-PGBD3P0DP91 1061 aa7.41□□□□□ -1.22
HMGB1P40-201ENST00000525121 KNSTRNQ9Y448 316 aa7.41□□□□□ -1.22
HMGB1P40-201ENST00000525121 KIF7Q2M1P5 1343 aa7.41□□□□□ -1.22
HMGB1P40-201ENST00000525121 AATKQ6ZMQ8 1374 aa7.41□□□□□ -1.22
HMGB1P40-201ENST00000525121 ARHGEF25Q86VW2 580 aa7.4□□□□□ -1.22
HMGB1P40-201ENST00000525121 GGNBP2Q9H3C7 697 aa7.4□□□□□ -1.22
HMGB1P40-201ENST00000525121 PANK3Q9H999 370 aa7.4□□□□□ -1.22
HMGB1P40-201ENST00000525121 ZRANB1Q9UGI0 708 aa7.4□□□□□ -1.22
HMGB1P40-201ENST00000525121 NSD2O96028 1365 aa7.4□□□□□ -1.22
HMGB1P40-201ENST00000525121 CCDC7Q96M83 1385 aa7.4□□□□□ -1.22
HMGB1P40-201ENST00000525121 ABCC6O95255 1503 aa7.4□□□□□ -1.22
HMGB1P40-201ENST00000525121 USP54Q70EL1 1684 aa7.4□□□□□ -1.23
HMGB1P40-201ENST00000525121 NFAT5O94916 1531 aa7.39□□□□□ -1.23
HMGB1P40-201ENST00000525121 COL5A2P05997 1499 aaPredicted RBP7.39□□□□□ -1.23
HMGB1P40-201ENST00000525121 RGS12O14924 1447 aa7.39□□□□□ -1.23
HMGB1P40-201ENST00000525121 FYB1O15117 783 aa7.39□□□□□ -1.23
HMGB1P40-201ENST00000525121 AMPHP49418 695 aa7.39□□□□□ -1.23
HMGB1P40-201ENST00000525121 TOM1L2Q6ZVM7 507 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms