RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 NBPF8Q3BBV2 869 aa28.52■■■□□ 2.16
USP53-208ENST00000514305 ROCK2O75116 1388 aaKnown RBP28.51■■■□□ 2.16
USP53-208ENST00000514305 SLIT2O94813 1529 aa28.5■■■□□ 2.15
USP53-208ENST00000514305 GJD4Q96KN9 370 aaPredicted RBP28.5■■■□□ 2.15
USP53-208ENST00000514305 WASLO00401 505 aaPredicted RBP28.49■■■□□ 2.15
USP53-208ENST00000514305 PLEKHG5O94827 1062 aa28.49■■■□□ 2.15
USP53-208ENST00000514305 UNC5CLQ8IV45 518 aa28.49■■■□□ 2.15
USP53-208ENST00000514305 ITSN1Q15811 1721 aa28.49■■■□□ 2.15
USP53-208ENST00000514305 GPRASP1Q5JY77 1395 aa28.49■■■□□ 2.15
USP53-208ENST00000514305 PLCH1Q4KWH8 1693 aa28.48■■■□□ 2.15
USP53-208ENST00000514305 TRPM3Q9HCF6 1732 aaPredicted RBP28.47■■■□□ 2.15
USP53-208ENST00000514305 CABLES1Q8TDN4 633 aa28.47■■■□□ 2.15
USP53-208ENST00000514305 NWD2Q9ULI1 1742 aa28.46■■■□□ 2.15
USP53-208ENST00000514305 NBPF1Q3BBV0 1214 aa28.45■■■□□ 2.14
USP53-208ENST00000514305 CARD11Q9BXL7 1154 aa28.45■■■□□ 2.14
USP53-208ENST00000514305 RALGAPBQ86X10 1494 aa28.45■■■□□ 2.14
USP53-208ENST00000514305 PRR36Q9H6K5 1346 aa28.44■■■□□ 2.14
USP53-208ENST00000514305 ALS2Q96Q42 1657 aa28.44■■■□□ 2.14
USP53-208ENST00000514305 TRPM1Q7Z4N2 1603 aa28.43■■■□□ 2.14
USP53-208ENST00000514305 GLI3P10071 1580 aa28.42■■■□□ 2.14
USP53-208ENST00000514305 SPINK5Q9NQ38 1064 aaPredicted RBP28.42■■■□□ 2.14
USP53-208ENST00000514305 NGDNQ8NEJ9 315 aaKnown RBP28.41■■■□□ 2.14
USP53-208ENST00000514305 ATP7BP35670 1465 aa28.38■■■□□ 2.13
USP53-208ENST00000514305 PAK3O75914 559 aaPredicted RBP28.36■■■□□ 2.13
USP53-208ENST00000514305 CCDC9Q9Y3X0 531 aaKnown RBP28.36■■■□□ 2.13
USP53-208ENST00000514305 VPS72Q15906 364 aa28.35■■■□□ 2.13
USP53-208ENST00000514305 NUDT16Q96DE0 195 aaKnown RBP28.35■■■□□ 2.13
USP53-208ENST00000514305 BRWD3Q6RI45 1802 aa28.34■■■□□ 2.13
USP53-208ENST00000514305 EP400Q96L91 3159 aa28.34■■■□□ 2.13
USP53-208ENST00000514305 SLC24A1O60721 1099 aa28.34■■■□□ 2.13
USP53-208ENST00000514305 COL14A1Q05707 1796 aaKnown RBP28.34■■■□□ 2.13
USP53-208ENST00000514305 FAM83GA6ND36 823 aa28.32■■■□□ 2.12
USP53-208ENST00000514305 CCDC125Q86Z20 511 aa28.32■■■□□ 2.12
USP53-208ENST00000514305 CDK19Q9BWU1 502 aa28.32■■■□□ 2.12
USP53-208ENST00000514305 TOPAZ1Q8N9V7 1692 aa28.32■■■□□ 2.12
USP53-208ENST00000514305 CRYBG1Q9Y4K1 1723 aa28.32■■■□□ 2.12
USP53-208ENST00000514305 NRAPQ86VF7 1730 aa28.31■■■□□ 2.12
USP53-208ENST00000514305 CENPJQ9HC77 1338 aaPredicted RBP28.28■■■□□ 2.12
USP53-208ENST00000514305 CAPN15O75808 1086 aa28.27■■■□□ 2.12
USP53-208ENST00000514305 SEPT12Q8IYM1 358 aa28.27■■■□□ 2.12
USP53-208ENST00000514305 BTG4Q9NY30 223 aa28.27■■■□□ 2.12
USP53-208ENST00000514305 CCDC61Q9Y6R9 512 aa28.26■■■□□ 2.11
USP53-208ENST00000514305 EIF4G2P78344 907 aaKnown RBP eCLIP28.25■■■□□ 2.11
USP53-208ENST00000514305 QRICH2Q9H0J4 1663 aa28.25■■■□□ 2.11
USP53-208ENST00000514305 PHRF1Q9P1Y6 1649 aaKnown RBP28.24■■■□□ 2.11
USP53-208ENST00000514305 A0A0G2JS52 829 aa28.23■■■□□ 2.11
USP53-208ENST00000514305 MYT1Q01538 1121 aa28.23■■■□□ 2.11
USP53-208ENST00000514305 POLR3AO14802 1390 aaPredicted RBP28.23■■■□□ 2.11
USP53-208ENST00000514305 ACEP12821 1306 aa28.22■■■□□ 2.11
USP53-208ENST00000514305 ONECUT3O60422 494 aaPredicted RBP28.22■■■□□ 2.11
USP53-208ENST00000514305 BLMP54132 1417 aaPredicted RBP28.22■■■□□ 2.11
USP53-208ENST00000514305 PRDM11Q9NQV5 511 aa28.22■■■□□ 2.11
USP53-208ENST00000514305 USP47Q96K76 1375 aa28.22■■■□□ 2.11
USP53-208ENST00000514305 SRPK2P78362 688 aaKnown RBP28.21■■■□□ 2.11
USP53-208ENST00000514305 PLEKHG3A1L390 1219 aa28.19■■■□□ 2.1
USP53-208ENST00000514305 KRT27Q7Z3Y8 459 aa28.19■■■□□ 2.1
USP53-208ENST00000514305 SF3B2Q13435 895 aaKnown RBP28.18■■■□□ 2.1
USP53-208ENST00000514305 ZRANB1Q9UGI0 708 aa28.18■■■□□ 2.1
USP53-208ENST00000514305 ST20-MTHFSA0A0A6YYL1 179 aa28.16■■■□□ 2.1
USP53-208ENST00000514305 FAM98CQ17RN3 349 aaKnown RBP28.16■■■□□ 2.1
USP53-208ENST00000514305 PPIP5K1Q6PFW1 1433 aa28.16■■■□□ 2.1
USP53-208ENST00000514305 KIAA0232Q92628 1395 aa28.15■■■□□ 2.1
USP53-208ENST00000514305 NUTM2GQ5VZR2 741 aa28.15■■■□□ 2.1
USP53-208ENST00000514305 SBNO2Q9Y2G9 1366 aa28.14■■■□□ 2.1
USP53-208ENST00000514305 ABTB2Q8N961 1025 aa28.13■■■□□ 2.09
USP53-208ENST00000514305 SPATA31A5Q5VU36 1347 aa28.13■■■□□ 2.09
USP53-208ENST00000514305 EVC2Q86UK5 1308 aa28.13■■■□□ 2.09
USP53-208ENST00000514305 SPATA31A7Q8IWB4 1347 aa28.13■■■□□ 2.09
USP53-208ENST00000514305 CABP2Q9NPB3 220 aa28.12■■■□□ 2.09
USP53-208ENST00000514305 ZC3H6P61129 1189 aaKnown RBP28.11■■■□□ 2.09
USP53-208ENST00000514305 NRKQ7Z2Y5 1582 aa28.11■■■□□ 2.09
USP53-208ENST00000514305 CHRNA2Q15822 529 aa28.1■■■□□ 2.09
USP53-208ENST00000514305 CDCA8Q53HL2 280 aa28.1■■■□□ 2.09
USP53-208ENST00000514305 HSPA5P11021 654 aaKnown RBP28.09■■■□□ 2.09
USP53-208ENST00000514305 TMF1P82094 1093 aa28.09■■■□□ 2.09
USP53-208ENST00000514305 STRN4Q9NRL3 753 aa28.08■■■□□ 2.09
USP53-208ENST00000514305 BRD4O60885 1362 aaPredicted RBP28.08■■■□□ 2.09
USP53-208ENST00000514305 THSD7AQ9UPZ6 1657 aa28.07■■■□□ 2.08
USP53-208ENST00000514305 DSG3P32926 999 aa28.07■■■□□ 2.08
USP53-208ENST00000514305 DEFB132Q7Z7B7 95 aa28.06■■■□□ 2.08
USP53-208ENST00000514305 NLRP13Q86W25 1043 aa28.06■■■□□ 2.08
USP53-208ENST00000514305 USP19O94966 1318 aa28.04■■■□□ 2.08
USP53-208ENST00000514305 SPATA31A1Q5TZJ5 1347 aa28.04■■■□□ 2.08
USP53-208ENST00000514305 PUS7Q96PZ0 661 aaKnown RBP28.04■■■□□ 2.08
USP53-208ENST00000514305 RGPD1P0DJD0 1748 aa28.04■■■□□ 2.08
USP53-208ENST00000514305 EVA1CP58658 441 aa28.03■■■□□ 2.08
USP53-208ENST00000514305 CABP1Q9NZU7 370 aa28.03■■■□□ 2.08
USP53-208ENST00000514305 CPDO75976 1380 aa28.02■■■□□ 2.08
USP53-208ENST00000514305 TESK2Q96S53 571 aa28.02■■■□□ 2.08
USP53-208ENST00000514305 USP6P35125 1406 aa28.01■■■□□ 2.08
USP53-208ENST00000514305 LMO7Q8WWI1 1683 aa28■■■□□ 2.07
USP53-208ENST00000514305 BAG6P46379 1132 aa28■■■□□ 2.07
USP53-208ENST00000514305 SSH2Q76I76 1423 aa28■■■□□ 2.07
USP53-208ENST00000514305 GCP02774 474 aa27.99■■■□□ 2.07
USP53-208ENST00000514305 CAMTA1Q9Y6Y1 1673 aa27.98■■■□□ 2.07
USP53-208ENST00000514305 USP35Q9P2H5 1018 aa27.98■■■□□ 2.07
USP53-208ENST00000514305 NLRP6P59044 892 aa27.96■■■□□ 2.07
USP53-208ENST00000514305 FAM182BQ5T319 152 aa27.96■■■□□ 2.07
USP53-208ENST00000514305 AKAP12Q02952 1782 aa27.95■■■□□ 2.06
USP53-208ENST00000514305 PIK3C2AO00443 1686 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms