RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 DISP2A7MBM2 1401 aa28.48■■■□□ 2.15
HMGCS1-206ENST00000511774 PRR36Q9H6K5 1346 aa28.47■■■□□ 2.15
HMGCS1-206ENST00000511774 DLC1Q96QB1 1528 aa28.47■■■□□ 2.15
HMGCS1-206ENST00000511774 EZH2Q15910 746 aaKnown RBP28.44■■■□□ 2.14
HMGCS1-206ENST00000511774 HIRIP3Q9BW71 556 aaPredicted RBP28.43■■■□□ 2.14
HMGCS1-206ENST00000511774 ADGRB1O14514 1584 aa28.42■■■□□ 2.14
HMGCS1-206ENST00000511774 ACIN1Q9UKV3 1341 aaKnown RBP28.42■■■□□ 2.14
HMGCS1-206ENST00000511774 POGKQ9P215 609 aa28.41■■■□□ 2.14
HMGCS1-206ENST00000511774 CAMKK2Q96RR4 588 aa28.39■■■□□ 2.14
HMGCS1-206ENST00000511774 TULP4Q9NRJ4 1543 aa28.38■■■□□ 2.13
HMGCS1-206ENST00000511774 GPRASP1Q5JY77 1395 aa28.37■■■□□ 2.13
HMGCS1-206ENST00000511774 MINK1Q8N4C8 1332 aaPredicted RBP28.37■■■□□ 2.13
HMGCS1-206ENST00000511774 TRIM37O94972 964 aa28.35■■■□□ 2.13
HMGCS1-206ENST00000511774 TRAK1Q9UPV9 953 aa28.35■■■□□ 2.13
HMGCS1-206ENST00000511774 SPATA31A1Q5TZJ5 1347 aa28.35■■■□□ 2.13
HMGCS1-206ENST00000511774 PRDM11Q9NQV5 511 aa28.34■■■□□ 2.13
HMGCS1-206ENST00000511774 RREB1Q92766 1687 aa28.34■■■□□ 2.13
HMGCS1-206ENST00000511774 PHRF1Q9P1Y6 1649 aaKnown RBP28.33■■■□□ 2.13
HMGCS1-206ENST00000511774 CHRNA2Q15822 529 aa28.32■■■□□ 2.12
HMGCS1-206ENST00000511774 KIAA0232Q92628 1395 aa28.32■■■□□ 2.12
HMGCS1-206ENST00000511774 NUP188Q5SRE5 1749 aa28.32■■■□□ 2.12
HMGCS1-206ENST00000511774 WASLO00401 505 aaPredicted RBP28.29■■■□□ 2.12
HMGCS1-206ENST00000511774 PAK3O75914 559 aaPredicted RBP28.29■■■□□ 2.12
HMGCS1-206ENST00000511774 NGDNQ8NEJ9 315 aaKnown RBP28.28■■■□□ 2.12
HMGCS1-206ENST00000511774 APBA3O96018 575 aa28.27■■■□□ 2.12
HMGCS1-206ENST00000511774 FAM196AQ6ZSG2 479 aa28.27■■■□□ 2.12
HMGCS1-206ENST00000511774 STRN4Q9NRL3 753 aa28.27■■■□□ 2.12
HMGCS1-206ENST00000511774 EIF3AQ14152 1382 aaKnown RBP28.25■■■□□ 2.11
HMGCS1-206ENST00000511774 ATP7BP35670 1465 aa28.25■■■□□ 2.11
HMGCS1-206ENST00000511774 ZC3H6P61129 1189 aaKnown RBP28.23■■■□□ 2.11
HMGCS1-206ENST00000511774 ITSN1Q15811 1721 aa28.23■■■□□ 2.11
HMGCS1-206ENST00000511774 NUTM2GQ5VZR2 741 aa28.22■■■□□ 2.11
HMGCS1-206ENST00000511774 USP35Q9P2H5 1018 aa28.22■■■□□ 2.11
HMGCS1-206ENST00000511774 PARD3Q8TEW0 1356 aa28.22■■■□□ 2.11
HMGCS1-206ENST00000511774 ARHGEF28Q8N1W1 1705 aaKnown RBP28.21■■■□□ 2.11
HMGCS1-206ENST00000511774 SSH2Q76I76 1423 aa28.2■■■□□ 2.11
HMGCS1-206ENST00000511774 CAMTA1Q9Y6Y1 1673 aa28.19■■■□□ 2.1
HMGCS1-206ENST00000511774 YY1P25490 414 aa28.18■■■□□ 2.1
HMGCS1-206ENST00000511774 NUDT16Q96DE0 195 aaKnown RBP28.18■■■□□ 2.1
HMGCS1-206ENST00000511774 NRKQ7Z2Y5 1582 aa28.18■■■□□ 2.1
HMGCS1-206ENST00000511774 LMO7Q8WWI1 1683 aa28.18■■■□□ 2.1
HMGCS1-206ENST00000511774 BARGINQ6ZT62 677 aa28.17■■■□□ 2.1
HMGCS1-206ENST00000511774 KDM2AQ9Y2K7 1162 aa28.17■■■□□ 2.1
HMGCS1-206ENST00000511774 TOPAZ1Q8N9V7 1692 aa28.16■■■□□ 2.1
HMGCS1-206ENST00000511774 LARP1Q6PKG0 1096 aaKnown RBP28.15■■■□□ 2.1
HMGCS1-206ENST00000511774 PDE3BQ13370 1112 aa28.13■■■□□ 2.09
HMGCS1-206ENST00000511774 DCAF11Q8TEB1 546 aa28.11■■■□□ 2.09
HMGCS1-206ENST00000511774 POLR3AO14802 1390 aaPredicted RBP28.11■■■□□ 2.09
HMGCS1-206ENST00000511774 PARP4Q9UKK3 1724 aaKnown RBP28.09■■■□□ 2.09
HMGCS1-206ENST00000511774 EVA1CP58658 441 aa28.09■■■□□ 2.09
HMGCS1-206ENST00000511774 TCP11L2Q8N4U5 519 aa28.09■■■□□ 2.09
HMGCS1-206ENST00000511774 ACEP12821 1306 aa28.09■■■□□ 2.09
HMGCS1-206ENST00000511774 PEAK1Q9H792 1746 aa28.09■■■□□ 2.09
HMGCS1-206ENST00000511774 CDK19Q9BWU1 502 aa28.08■■■□□ 2.09
HMGCS1-206ENST00000511774 NBPF8Q3BBV2 869 aa28.07■■■□□ 2.08
HMGCS1-206ENST00000511774 NBPF14Q5TI25 921 aa28.07■■■□□ 2.08
HMGCS1-206ENST00000511774 SPON1Q9HCB6 807 aa28.06■■■□□ 2.08
HMGCS1-206ENST00000511774 USP19O94966 1318 aa28.06■■■□□ 2.08
HMGCS1-206ENST00000511774 CPDO75976 1380 aa28.06■■■□□ 2.08
HMGCS1-206ENST00000511774 SBF2Q86WG5 1849 aa28.06■■■□□ 2.08
HMGCS1-206ENST00000511774 KCNQ2O43526 872 aa28.05■■■□□ 2.08
HMGCS1-206ENST00000511774 RAB3GAP2Q9H2M9 1393 aa28.04■■■□□ 2.08
HMGCS1-206ENST00000511774 CASZ1Q86V15 1759 aa28.03■■■□□ 2.08
HMGCS1-206ENST00000511774 COL5A2P05997 1499 aaPredicted RBP28.02■■■□□ 2.08
HMGCS1-206ENST00000511774 ANO8Q9HCE9 1232 aaPredicted RBP28.02■■■□□ 2.08
HMGCS1-206ENST00000511774 PPP1R1BQ9UD71 204 aaPredicted RBP28.02■■■□□ 2.08
HMGCS1-206ENST00000511774 NINLQ9Y2I6 1382 aa28.01■■■□□ 2.07
HMGCS1-206ENST00000511774 PLEKHG3A1L390 1219 aa28.01■■■□□ 2.07
HMGCS1-206ENST00000511774 PTF1AQ7RTS3 328 aa28.01■■■□□ 2.07
HMGCS1-206ENST00000511774 ABTB2Q8N961 1025 aa28.01■■■□□ 2.07
HMGCS1-206ENST00000511774 RGPD3A6NKT7 1758 aaPredicted RBP28.01■■■□□ 2.07
HMGCS1-206ENST00000511774 RGPD4Q7Z3J3 1758 aa28.01■■■□□ 2.07
HMGCS1-206ENST00000511774 UTRNP46939 3433 aa28.01■■■□□ 2.07
HMGCS1-206ENST00000511774 LRRC37A3O60309 1634 aa28■■■□□ 2.07
HMGCS1-206ENST00000511774 PDGFDQ9GZP0 370 aaPredicted RBP27.99■■■□□ 2.07
HMGCS1-206ENST00000511774 THRAP3Q9Y2W1 955 aaKnown RBP27.99■■■□□ 2.07
HMGCS1-206ENST00000511774 CCDC61Q9Y6R9 512 aa27.99■■■□□ 2.07
HMGCS1-206ENST00000511774 GCP02774 474 aa27.97■■■□□ 2.07
HMGCS1-206ENST00000511774 OVOS2A0A0G2JMS6 1433 aa27.95■■■□□ 2.07
HMGCS1-206ENST00000511774 OVOS2A0A0J9YW53 1432 aa27.95■■■□□ 2.07
HMGCS1-206ENST00000511774 OVOS2Q6IE36 1432 aa27.95■■■□□ 2.07
HMGCS1-206ENST00000511774 CRB1P82279 1406 aa27.94■■■□□ 2.06
HMGCS1-206ENST00000511774 MYOM1P52179 1685 aa27.93■■■□□ 2.06
HMGCS1-206ENST00000511774 COL18A1P39060 1754 aa27.92■■■□□ 2.06
HMGCS1-206ENST00000511774 PROM2Q8N271 834 aa27.92■■■□□ 2.06
HMGCS1-206ENST00000511774 WNK3Q9BYP7 1800 aa27.92■■■□□ 2.06
HMGCS1-206ENST00000511774 PLSCR1O15162 318 aa27.91■■■□□ 2.06
HMGCS1-206ENST00000511774 STAC3Q96MF2 364 aa27.91■■■□□ 2.06
HMGCS1-206ENST00000511774 NLRP13Q86W25 1043 aa27.9■■■□□ 2.06
HMGCS1-206ENST00000511774 PPIP5K1Q6PFW1 1433 aa27.89■■■□□ 2.06
HMGCS1-206ENST00000511774 ZBTB7CA1YPR0 619 aa27.88■■■□□ 2.05
HMGCS1-206ENST00000511774 SLIT3O75094 1523 aa27.87■■■□□ 2.05
HMGCS1-206ENST00000511774 PTGER2P43116 358 aa27.87■■■□□ 2.05
HMGCS1-206ENST00000511774 KIAA1210Q9ULL0 1709 aa27.87■■■□□ 2.05
HMGCS1-206ENST00000511774 ZBTB7AO95365 584 aa27.86■■■□□ 2.05
HMGCS1-206ENST00000511774 NBPF1Q3BBV0 1214 aa27.86■■■□□ 2.05
HMGCS1-206ENST00000511774 AATKQ6ZMQ8 1374 aa27.86■■■□□ 2.05
HMGCS1-206ENST00000511774 MARCH10Q8NA82 808 aaPredicted RBP27.85■■■□□ 2.05
HMGCS1-206ENST00000511774 AKAP12Q02952 1782 aa27.84■■■□□ 2.05
HMGCS1-206ENST00000511774 C11orf95C9JLR9 678 aaPredicted RBP27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms