RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 CCDC9Q9Y3X0 531 aaKnown RBP20.69■□□□□ 0.9
HMGCS1-203ENST00000507004 GLI3P10071 1580 aa20.68■□□□□ 0.9
HMGCS1-203ENST00000507004 PLCH1Q4KWH8 1693 aa20.68■□□□□ 0.9
HMGCS1-203ENST00000507004 SRPK2P78362 688 aaKnown RBP20.68■□□□□ 0.9
HMGCS1-203ENST00000507004 NBPF8Q3BBV2 869 aa20.68■□□□□ 0.9
HMGCS1-203ENST00000507004 COL14A1Q05707 1796 aaKnown RBP20.67■□□□□ 0.9
HMGCS1-203ENST00000507004 PLEKHG5O94827 1062 aa20.67■□□□□ 0.9
HMGCS1-203ENST00000507004 ACEP12821 1306 aa20.67■□□□□ 0.9
HMGCS1-203ENST00000507004 TOPAZ1Q8N9V7 1692 aa20.66■□□□□ 0.9
HMGCS1-203ENST00000507004 SEPT12Q8IYM1 358 aa20.65■□□□□ 0.9
HMGCS1-203ENST00000507004 PRDM11Q9NQV5 511 aa20.65■□□□□ 0.9
HMGCS1-203ENST00000507004 BTG4Q9NY30 223 aa20.65■□□□□ 0.9
HMGCS1-203ENST00000507004 SIN3AQ96ST3 1273 aa20.64■□□□□ 0.89
HMGCS1-203ENST00000507004 ROCK2O75116 1388 aaKnown RBP20.63■□□□□ 0.89
HMGCS1-203ENST00000507004 EVC2Q86UK5 1308 aa20.63■□□□□ 0.89
HMGCS1-203ENST00000507004 NEUROD1Q13562 356 aa20.63■□□□□ 0.89
HMGCS1-203ENST00000507004 PPIP5K1Q6PFW1 1433 aa20.62■□□□□ 0.89
HMGCS1-203ENST00000507004 TRPM1Q7Z4N2 1603 aa20.61■□□□□ 0.89
HMGCS1-203ENST00000507004 NLRP13Q86W25 1043 aa20.61■□□□□ 0.89
HMGCS1-203ENST00000507004 ABTB2Q8N961 1025 aa20.61■□□□□ 0.89
HMGCS1-203ENST00000507004 CRYBG1Q9Y4K1 1723 aa20.61■□□□□ 0.89
HMGCS1-203ENST00000507004 BLMP54132 1417 aaPredicted RBP20.61■□□□□ 0.89
HMGCS1-203ENST00000507004 SF3B2Q13435 895 aaKnown RBP20.6■□□□□ 0.89
HMGCS1-203ENST00000507004 KRT27Q7Z3Y8 459 aa20.6■□□□□ 0.89
HMGCS1-203ENST00000507004 NRAPQ86VF7 1730 aa20.6■□□□□ 0.89
HMGCS1-203ENST00000507004 QRICH2Q9H0J4 1663 aa20.6■□□□□ 0.89
HMGCS1-203ENST00000507004 CABP2Q9NPB3 220 aa20.59■□□□□ 0.89
HMGCS1-203ENST00000507004 SPATA31A5Q5VU36 1347 aa20.58■□□□□ 0.89
HMGCS1-203ENST00000507004 SPATA31A7Q8IWB4 1347 aa20.58■□□□□ 0.89
HMGCS1-203ENST00000507004 KIAA0232Q92628 1395 aa20.58■□□□□ 0.88
HMGCS1-203ENST00000507004 A0A0G2JS52 829 aa20.57■□□□□ 0.88
HMGCS1-203ENST00000507004 MYT1Q01538 1121 aa20.57■□□□□ 0.88
HMGCS1-203ENST00000507004 CPDO75976 1380 aa20.57■□□□□ 0.88
HMGCS1-203ENST00000507004 USP19O94966 1318 aa20.56■□□□□ 0.88
HMGCS1-203ENST00000507004 ZNF692Q9BU19 519 aaPredicted RBP20.56■□□□□ 0.88
HMGCS1-203ENST00000507004 ZRANB1Q9UGI0 708 aa20.56■□□□□ 0.88
HMGCS1-203ENST00000507004 PHRF1Q9P1Y6 1649 aaKnown RBP20.56■□□□□ 0.88
HMGCS1-203ENST00000507004 FAM98CQ17RN3 349 aaKnown RBP20.55■□□□□ 0.88
HMGCS1-203ENST00000507004 CABP1Q9NZU7 370 aa20.55■□□□□ 0.88
HMGCS1-203ENST00000507004 TONSLQ96HA7 1378 aa20.54■□□□□ 0.88
HMGCS1-203ENST00000507004 SBNO2Q9Y2G9 1366 aa20.54■□□□□ 0.88
HMGCS1-203ENST00000507004 USP6P35125 1406 aa20.53■□□□□ 0.88
HMGCS1-203ENST00000507004 BRWD3Q6RI45 1802 aa20.53■□□□□ 0.88
HMGCS1-203ENST00000507004 ZC3H6P61129 1189 aaKnown RBP20.53■□□□□ 0.88
HMGCS1-203ENST00000507004 EVA1CP58658 441 aa20.52■□□□□ 0.88
HMGCS1-203ENST00000507004 TRIM26Q12899 539 aaPredicted RBP20.52■□□□□ 0.88
HMGCS1-203ENST00000507004 NUTM2GQ5VZR2 741 aa20.52■□□□□ 0.88
HMGCS1-203ENST00000507004 SPATA31A1Q5TZJ5 1347 aa20.52■□□□□ 0.87
HMGCS1-203ENST00000507004 GCP02774 474 aa20.51■□□□□ 0.87
HMGCS1-203ENST00000507004 SLC24A1O60721 1099 aa20.5■□□□□ 0.87
HMGCS1-203ENST00000507004 CHRNA2Q15822 529 aa20.5■□□□□ 0.87
HMGCS1-203ENST00000507004 CARD11Q9BXL7 1154 aa20.5■□□□□ 0.87
HMGCS1-203ENST00000507004 NRKQ7Z2Y5 1582 aa20.5■□□□□ 0.87
HMGCS1-203ENST00000507004 NLRP6P59044 892 aa20.49■□□□□ 0.87
HMGCS1-203ENST00000507004 STRN4Q9NRL3 753 aa20.49■□□□□ 0.87
HMGCS1-203ENST00000507004 BAG6P46379 1132 aa20.48■□□□□ 0.87
HMGCS1-203ENST00000507004 BARGINQ6ZT62 677 aa20.48■□□□□ 0.87
HMGCS1-203ENST00000507004 THRAP3Q9Y2W1 955 aaKnown RBP20.48■□□□□ 0.87
HMGCS1-203ENST00000507004 TTC21AQ8NDW8 1320 aa20.48■□□□□ 0.87
HMGCS1-203ENST00000507004 SSH2Q76I76 1423 aa20.47■□□□□ 0.87
HMGCS1-203ENST00000507004 THSD7AQ9UPZ6 1657 aa20.46■□□□□ 0.87
HMGCS1-203ENST00000507004 KCNH5Q8NCM2 988 aa20.46■□□□□ 0.87
HMGCS1-203ENST00000507004 C11orf95C9JLR9 678 aaPredicted RBP20.45■□□□□ 0.86
HMGCS1-203ENST00000507004 PUS7Q96PZ0 661 aaKnown RBP20.45■□□□□ 0.86
HMGCS1-203ENST00000507004 SLIT3O75094 1523 aa20.44■□□□□ 0.86
HMGCS1-203ENST00000507004 TCP11L2Q8N4U5 519 aa20.44■□□□□ 0.86
HMGCS1-203ENST00000507004 AATKQ6ZMQ8 1374 aa20.44■□□□□ 0.86
HMGCS1-203ENST00000507004 LMO7Q8WWI1 1683 aa20.43■□□□□ 0.86
HMGCS1-203ENST00000507004 CAMTA1Q9Y6Y1 1673 aa20.43■□□□□ 0.86
HMGCS1-203ENST00000507004 FAM196AQ6ZSG2 479 aa20.43■□□□□ 0.86
HMGCS1-203ENST00000507004 TTC21BQ7Z4L5 1316 aa20.43■□□□□ 0.86
HMGCS1-203ENST00000507004 CPSF1Q10570 1443 aaKnown RBP20.43■□□□□ 0.86
HMGCS1-203ENST00000507004 EP400Q96L91 3159 aa20.42■□□□□ 0.86
HMGCS1-203ENST00000507004 PDE3BQ13370 1112 aa20.41■□□□□ 0.86
HMGCS1-203ENST00000507004 DEFB132Q7Z7B7 95 aa20.41■□□□□ 0.86
HMGCS1-203ENST00000507004 LARP1Q6PKG0 1096 aaKnown RBP20.4■□□□□ 0.86
HMGCS1-203ENST00000507004 KTN1Q86UP2 1357 aaKnown RBP20.4■□□□□ 0.86
HMGCS1-203ENST00000507004 AKAP12Q02952 1782 aa20.39■□□□□ 0.86
HMGCS1-203ENST00000507004 RGPD1P0DJD0 1748 aa20.39■□□□□ 0.86
HMGCS1-203ENST00000507004 COL5A2P05997 1499 aaPredicted RBP20.39■□□□□ 0.85
HMGCS1-203ENST00000507004 CRB1P82279 1406 aa20.39■□□□□ 0.85
HMGCS1-203ENST00000507004 USP35Q9P2H5 1018 aa20.39■□□□□ 0.85
HMGCS1-203ENST00000507004 DISP2A7MBM2 1401 aa20.38■□□□□ 0.85
HMGCS1-203ENST00000507004 HDGFL2Q7Z4V5 671 aaPredicted RBP20.38■□□□□ 0.85
HMGCS1-203ENST00000507004 PIK3C2AO00443 1686 aa20.37■□□□□ 0.85
HMGCS1-203ENST00000507004 NINLQ9Y2I6 1382 aa20.36■□□□□ 0.85
HMGCS1-203ENST00000507004 CDCA7Q9BWT1 371 aaPredicted RBP20.36■□□□□ 0.85
HMGCS1-203ENST00000507004 TERF2IPQ9NYB0 399 aa20.36■□□□□ 0.85
HMGCS1-203ENST00000507004 PARD3Q8TEW0 1356 aa20.35■□□□□ 0.85
HMGCS1-203ENST00000507004 ARHGEF25Q86VW2 580 aa20.35■□□□□ 0.85
HMGCS1-203ENST00000507004 USP31Q70CQ4 1352 aa20.34■□□□□ 0.85
HMGCS1-203ENST00000507004 ABCC6O95255 1503 aa20.34■□□□□ 0.85
HMGCS1-203ENST00000507004 ZBTB7CA1YPR0 619 aa20.34■□□□□ 0.85
HMGCS1-203ENST00000507004 TMC1Q8TDI8 760 aa20.34■□□□□ 0.85
HMGCS1-203ENST00000507004 WDR17Q8IZU2 1322 aa20.33■□□□□ 0.85
HMGCS1-203ENST00000507004 TOM1L2Q6ZVM7 507 aa20.33■□□□□ 0.85
HMGCS1-203ENST00000507004 TIMELESSQ9UNS1 1208 aa20.33■□□□□ 0.85
HMGCS1-203ENST00000507004 MON2Q7Z3U7 1717 aa20.33■□□□□ 0.84
HMGCS1-203ENST00000507004 EDC4Q6P2E9 1401 aaKnown RBP20.31■□□□□ 0.84
HMGCS1-203ENST00000507004 PARP4Q9UKK3 1724 aaKnown RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms