RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 KRTAP1-3Q8IUG1 177 aa6.78□□□□□ -1.32
HMGB3P17-201ENST00000504195 GNPATO15228 680 aa6.77□□□□□ -1.33
HMGB3P17-201ENST00000504195 ZIC2O95409 532 aaPredicted RBP6.77□□□□□ -1.33
HMGB3P17-201ENST00000504195 PAXIP1Q6ZW49 1069 aaPredicted RBP6.77□□□□□ -1.33
HMGB3P17-201ENST00000504195 MPNDQ8N594 471 aa6.77□□□□□ -1.33
HMGB3P17-201ENST00000504195 WHAMMQ8TF30 809 aa6.77□□□□□ -1.33
HMGB3P17-201ENST00000504195 USP46P62068 366 aa6.76□□□□□ -1.33
HMGB3P17-201ENST00000504195 LINC00528Q8N1L1 170 aa6.76□□□□□ -1.33
HMGB3P17-201ENST00000504195 PHF20L1A8MW92 1017 aa6.75□□□□□ -1.33
HMGB3P17-201ENST00000504195 CCNYL3P0C7X3 344 aa6.75□□□□□ -1.33
HMGB3P17-201ENST00000504195 SLURP2P0DP57 97 aa6.75□□□□□ -1.33
HMGB3P17-201ENST00000504195 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.75□□□□□ -1.33
HMGB3P17-201ENST00000504195 DNMT3LQ9UJW3 386 aa6.75□□□□□ -1.33
HMGB3P17-201ENST00000504195 RNFT1Q5M7Z0 435 aa6.74□□□□□ -1.33
HMGB3P17-201ENST00000504195 UNC93B1Q9H1C4 597 aa6.74□□□□□ -1.33
HMGB3P17-201ENST00000504195 ZFAND3Q9H8U3 227 aa6.74□□□□□ -1.33
HMGB3P17-201ENST00000504195 CD46P15529 392 aa6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 FAM174AQ8TBP5 190 aa6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 NANOS1Q8WY41 292 aaKnown RBP6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 HLA-CQ95604 372 aa6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 ITPKCQ96DU7 683 aa6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 KLF16Q9BXK1 252 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 ENAMQ9NRM1 1142 aa6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 SOS2Q07890 1332 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P17-201ENST00000504195 CDC14CA4D256 554 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 MS4A1P11836 297 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 PTSQ03393 145 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 ARID5BQ14865 1188 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 PODNQ7Z5L7 613 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 RETREG3Q86VR2 466 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 ZNF511Q8NB15 262 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 BAP1Q92560 729 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 DCAF5Q96JK2 942 aa6.72□□□□□ -1.33
HMGB3P17-201ENST00000504195 HOXA2O43364 376 aa6.71□□□□□ -1.34
HMGB3P17-201ENST00000504195 KCNV2Q8TDN2 545 aa6.71□□□□□ -1.34
HMGB3P17-201ENST00000504195 PROCP04070 461 aa6.7□□□□□ -1.34
HMGB3P17-201ENST00000504195 MEIOBQ8N635 442 aa6.7□□□□□ -1.34
HMGB3P17-201ENST00000504195 SYMPKQ92797 1274 aaKnown RBP6.7□□□□□ -1.34
HMGB3P17-201ENST00000504195 TTLL8A6PVC2 850 aa6.69□□□□□ -1.34
HMGB3P17-201ENST00000504195 GUCA2AQ02747 115 aa6.69□□□□□ -1.34
HMGB3P17-201ENST00000504195 SV2AQ7L0J3 742 aa6.69□□□□□ -1.34
HMGB3P17-201ENST00000504195 P3H3Q8IVL6 736 aa6.69□□□□□ -1.34
HMGB3P17-201ENST00000504195 CCDC155Q8N6L0 562 aa6.69□□□□□ -1.34
HMGB3P17-201ENST00000504195 PHOX2BQ99453 314 aa6.69□□□□□ -1.34
HMGB3P17-201ENST00000504195 SPTLC1O15269 473 aa6.68□□□□□ -1.34
HMGB3P17-201ENST00000504195 ADAMTS2O95450 1211 aa6.68□□□□□ -1.34
HMGB3P17-201ENST00000504195 NR5A1Q13285 461 aa6.68□□□□□ -1.34
HMGB3P17-201ENST00000504195 PTPRNQ16849 979 aa6.68□□□□□ -1.34
HMGB3P17-201ENST00000504195 LCE3BQ5TA77 95 aa6.68□□□□□ -1.34
HMGB3P17-201ENST00000504195 SMYD5Q6GMV2 418 aa6.67□□□□□ -1.34
HMGB3P17-201ENST00000504195 LYPD4Q6UWN0 246 aa6.67□□□□□ -1.34
HMGB3P17-201ENST00000504195 VWA5B2Q8N398 1253 aa6.67□□□□□ -1.34
HMGB3P17-201ENST00000504195 TSEN34Q9BSV6 310 aaKnown RBP6.67□□□□□ -1.34
HMGB3P17-201ENST00000504195 KCNH2Q12809 1159 aa6.66□□□□□ -1.34
HMGB3P17-201ENST00000504195 BEND7Q8N7W2 519 aaPredicted RBP6.66□□□□□ -1.34
HMGB3P17-201ENST00000504195 BTBD11A6QL63 1104 aa6.65□□□□□ -1.34
HMGB3P17-201ENST00000504195 C6orf229H3BNL8 230 aa6.65□□□□□ -1.34
HMGB3P17-201ENST00000504195 ITGA6P23229 1130 aa6.65□□□□□ -1.34
HMGB3P17-201ENST00000504195 CDK15Q96Q40 435 aa6.65□□□□□ -1.34
HMGB3P17-201ENST00000504195 EVA1BQ9NVM1 165 aa6.65□□□□□ -1.34
HMGB3P17-201ENST00000504195 FIGNL2A6NMB9 653 aa6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 SEMA3EO15041 775 aa6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 ITGB2P05107 769 aa6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 CELA2BP08218 269 aaPredicted RBP6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 NR3C2P08235 984 aa6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 BAG6P46379 1132 aa6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 SRSF11Q05519 484 aaKnown RBP6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 RBM26Q5T8P6 1007 aaKnown RBP6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 CNTNAP5Q8WYK1 1306 aa6.64□□□□□ -1.35
HMGB3P17-201ENST00000504195 NEDD1Q8NHV4 660 aa6.63□□□□□ -1.35
HMGB3P17-201ENST00000504195 SLC35F4A4IF30 521 aa6.61□□□□□ -1.35
HMGB3P17-201ENST00000504195 FURINP09958 794 aa6.61□□□□□ -1.35
HMGB3P17-201ENST00000504195 AGERQ15109 404 aa6.61□□□□□ -1.35
HMGB3P17-201ENST00000504195 NUTM1Q86Y26 1132 aa6.61□□□□□ -1.35
HMGB3P17-201ENST00000504195 CTHP32929 405 aa6.6□□□□□ -1.35
HMGB3P17-201ENST00000504195 SH3RF1Q7Z6J0 888 aa6.6□□□□□ -1.35
HMGB3P17-201ENST00000504195 GPR37O15354 613 aa6.59□□□□□ -1.35
HMGB3P17-201ENST00000504195 FDX1P10109 184 aa6.59□□□□□ -1.35
HMGB3P17-201ENST00000504195 FSHRP23945 695 aa6.59□□□□□ -1.35
HMGB3P17-201ENST00000504195 FOXJ1Q92949 421 aa6.58□□□□□ -1.36
HMGB3P17-201ENST00000504195 EMILIN1Q9Y6C2 1016 aa6.58□□□□□ -1.36
HMGB3P17-201ENST00000504195 TESPA1A2RU30 521 aaPredicted RBP6.56□□□□□ -1.36
HMGB3P17-201ENST00000504195 GRM5P41594 1212 aa6.56□□□□□ -1.36
HMGB3P17-201ENST00000504195 MDM2Q00987 491 aaPredicted RBP6.56□□□□□ -1.36
HMGB3P17-201ENST00000504195 BPHLQ86WA6 291 aaPredicted RBP6.55□□□□□ -1.36
HMGB3P17-201ENST00000504195 PRR7Q8TB68 274 aa6.55□□□□□ -1.36
HMGB3P17-201ENST00000504195 SPINT1O43278 529 aa6.54□□□□□ -1.36
HMGB3P17-201ENST00000504195 AMER1Q5JTC6 1135 aaPredicted RBP6.54□□□□□ -1.36
HMGB3P17-201ENST00000504195 CCDC116Q8IYX3 515 aa6.54□□□□□ -1.36
HMGB3P17-201ENST00000504195 KRTAP4-12Q9BQ66 201 aa6.54□□□□□ -1.36
HMGB3P17-201ENST00000504195 TSHZ2Q9NRE2 1034 aa6.54□□□□□ -1.36
HMGB3P17-201ENST00000504195 BCRP11274 1271 aa6.53□□□□□ -1.36
HMGB3P17-201ENST00000504195 DESI1Q6ICB0 168 aa6.53□□□□□ -1.36
HMGB3P17-201ENST00000504195 VASH1Q7L8A9 365 aaPredicted RBP6.53□□□□□ -1.36
HMGB3P17-201ENST00000504195 MBIPQ9NS73 344 aa6.53□□□□□ -1.36
HMGB3P17-201ENST00000504195 PCDHGC3Q9UN70 934 aa6.53□□□□□ -1.36
HMGB3P17-201ENST00000504195 ALYREFQ86V81 257 aaKnown RBP6.52□□□□□ -1.37
HMGB3P17-201ENST00000504195 GPIHBP1Q8IV16 184 aa6.52□□□□□ -1.37
HMGB3P17-201ENST00000504195 PGPEP1Q9NXJ5 209 aa6.52□□□□□ -1.37
HMGB3P17-201ENST00000504195 SPDYE5A6NIY4 337 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms