RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 A0A1W2PP64 1363 aa21.03■□□□□ 0.96
COL6A1-206ENST00000498614 NSD2O96028 1365 aa21.03■□□□□ 0.96
COL6A1-206ENST00000498614 MINK1Q8N4C8 1332 aaPredicted RBP21.03■□□□□ 0.96
COL6A1-206ENST00000498614 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.02■□□□□ 0.96
COL6A1-206ENST00000498614 SLC26A8Q96RN1 970 aa21.02■□□□□ 0.96
COL6A1-206ENST00000498614 SETD1BQ9UPS6 1966 aaKnown RBP21.01■□□□□ 0.95
COL6A1-206ENST00000498614 CEP170BQ9Y4F5 1589 aaPredicted RBP21.01■□□□□ 0.95
COL6A1-206ENST00000498614 U2AF1L5P0DN76 240 aaPredicted RBP21.01■□□□□ 0.95
COL6A1-206ENST00000498614 U2AF1Q01081 240 aaKnown RBP eCLIP21.01■□□□□ 0.95
COL6A1-206ENST00000498614 PANK1Q8TE04 598 aa21.01■□□□□ 0.95
COL6A1-206ENST00000498614 SEC24BO95487 1268 aa21.01■□□□□ 0.95
COL6A1-206ENST00000498614 HDGFP51858 240 aaKnown RBP21.01■□□□□ 0.95
COL6A1-206ENST00000498614 PRAM1Q96QH2 718 aa21.01■□□□□ 0.95
COL6A1-206ENST00000498614 EID1Q9Y6B2 187 aa21.01■□□□□ 0.95
COL6A1-206ENST00000498614 PHF23Q9BUL5 403 aaPredicted RBP21■□□□□ 0.95
COL6A1-206ENST00000498614 COG6Q9Y2V7 657 aa21■□□□□ 0.95
COL6A1-206ENST00000498614 PDE3AQ14432 1141 aa21■□□□□ 0.95
COL6A1-206ENST00000498614 GGNBP2Q9H3C7 697 aa21■□□□□ 0.95
COL6A1-206ENST00000498614 POGKQ9P215 609 aa20.99■□□□□ 0.95
COL6A1-206ENST00000498614 ABCC11Q96J66 1382 aa20.99■□□□□ 0.95
COL6A1-206ENST00000498614 WDR63Q8IWG1 891 aa20.99■□□□□ 0.95
COL6A1-206ENST00000498614 YTHDC2Q9H6S0 1430 aaKnown RBP20.98■□□□□ 0.95
COL6A1-206ENST00000498614 CLUAP1Q96AJ1 413 aa20.98■□□□□ 0.95
COL6A1-206ENST00000498614 VIRMAQ69YN4 1812 aaKnown RBP20.98■□□□□ 0.95
COL6A1-206ENST00000498614 RARSP54136 660 aaKnown RBP20.97■□□□□ 0.95
COL6A1-206ENST00000498614 ALKQ9UM73 1620 aa20.97■□□□□ 0.95
COL6A1-206ENST00000498614 NINLQ9Y2I6 1382 aa20.96■□□□□ 0.95
COL6A1-206ENST00000498614 BCL2L13Q9BXK5 485 aa20.96■□□□□ 0.95
COL6A1-206ENST00000498614 CCDC27Q2M243 656 aa20.95■□□□□ 0.94
COL6A1-206ENST00000498614 METP08581 1390 aa20.95■□□□□ 0.94
COL6A1-206ENST00000498614 HSPA2P54652 639 aa20.95■□□□□ 0.94
COL6A1-206ENST00000498614 MAPK8IP3Q9UPT6 1336 aa20.95■□□□□ 0.94
COL6A1-206ENST00000498614 ATAD2Q6PL18 1390 aa20.94■□□□□ 0.94
COL6A1-206ENST00000498614 U2SURPO15042 1029 aaKnown RBP20.94■□□□□ 0.94
COL6A1-206ENST00000498614 TNNQ9UQP3 1299 aa20.94■□□□□ 0.94
COL6A1-206ENST00000498614 ARHGAP23Q9P227 1491 aa20.93■□□□□ 0.94
COL6A1-206ENST00000498614 TERF2IPQ9NYB0 399 aa20.93■□□□□ 0.94
COL6A1-206ENST00000498614 ADGRB2O60241 1585 aa20.93■□□□□ 0.94
COL6A1-206ENST00000498614 SLIT1O75093 1534 aa20.92■□□□□ 0.94
COL6A1-206ENST00000498614 CD163L1Q9NR16 1453 aa20.92■□□□□ 0.94
COL6A1-206ENST00000498614 NRXN3Q9Y4C0 1643 aa20.92■□□□□ 0.94
COL6A1-206ENST00000498614 FYB1O15117 783 aa20.92■□□□□ 0.94
COL6A1-206ENST00000498614 ANKLE2Q86XL3 938 aa20.92■□□□□ 0.94
COL6A1-206ENST00000498614 AEBP2Q6ZN18 517 aaPredicted RBP20.91■□□□□ 0.94
COL6A1-206ENST00000498614 RLBP1P12271 317 aa20.9■□□□□ 0.94
COL6A1-206ENST00000498614 NCKAP5LQ9HCH0 1330 aa20.9■□□□□ 0.94
COL6A1-206ENST00000498614 ADAMTS13Q76LX8 1427 aa20.9■□□□□ 0.94
COL6A1-206ENST00000498614 WAPLQ7Z5K2 1190 aa20.9■□□□□ 0.94
COL6A1-206ENST00000498614 CDK19Q9BWU1 502 aa20.9■□□□□ 0.94
COL6A1-206ENST00000498614 MYH16Q9H6N6 1097 aa20.9■□□□□ 0.94
COL6A1-206ENST00000498614 PLEKHG1Q9ULL1 1385 aa20.9■□□□□ 0.94
COL6A1-206ENST00000498614 ANKRD26Q9UPS8 1709 aa20.9■□□□□ 0.94
COL6A1-206ENST00000498614 BECN1Q14457 450 aa20.89■□□□□ 0.93
COL6A1-206ENST00000498614 SLKQ9H2G2 1235 aaPredicted RBP20.89■□□□□ 0.93
COL6A1-206ENST00000498614 COL3A1P02461 1466 aaPredicted RBP20.89■□□□□ 0.93
COL6A1-206ENST00000498614 TSR2Q969E8 191 aaKnown RBP20.88■□□□□ 0.93
COL6A1-206ENST00000498614 HDGFL2Q7Z4V5 671 aaPredicted RBP20.87■□□□□ 0.93
COL6A1-206ENST00000498614 PLEKHF1Q96S99 279 aa20.87■□□□□ 0.93
COL6A1-206ENST00000498614 CABP1Q9NZU7 370 aa20.87■□□□□ 0.93
COL6A1-206ENST00000498614 ZNF142P52746 1687 aaPredicted RBP20.87■□□□□ 0.93
COL6A1-206ENST00000498614 PCDHB15Q9Y5E8 787 aa20.87■□□□□ 0.93
COL6A1-206ENST00000498614 NCBP3Q53F19 620 aaKnown RBP20.86■□□□□ 0.93
COL6A1-206ENST00000498614 SETD1AO15047 1707 aaKnown RBP20.85■□□□□ 0.93
COL6A1-206ENST00000498614 TMPOP42166 694 aaKnown RBP20.85■□□□□ 0.93
COL6A1-206ENST00000498614 MED14O60244 1454 aa20.84■□□□□ 0.93
COL6A1-206ENST00000498614 PMFBP1Q8TBY8 1022 aa20.84■□□□□ 0.93
COL6A1-206ENST00000498614 ANTXR1Q9H6X2 564 aa20.84■□□□□ 0.93
COL6A1-206ENST00000498614 FAM43AQ8N2R8 423 aa20.83■□□□□ 0.93
COL6A1-206ENST00000498614 TRIM35Q9UPQ4 493 aa20.83■□□□□ 0.93
COL6A1-206ENST00000498614 KIF20BQ96Q89 1820 aa20.83■□□□□ 0.92
COL6A1-206ENST00000498614 PDZRN3Q9UPQ7 1066 aa20.82■□□□□ 0.92
COL6A1-206ENST00000498614 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.82■□□□□ 0.92
COL6A1-206ENST00000498614 DIAPH1O60610 1272 aaKnown RBP20.81■□□□□ 0.92
COL6A1-206ENST00000498614 EXOSC9Q06265 439 aaKnown RBP20.81■□□□□ 0.92
COL6A1-206ENST00000498614 TBC1D32Q96NH3 1257 aa20.81■□□□□ 0.92
COL6A1-206ENST00000498614 AMOTL2Q9Y2J4 779 aa20.81■□□□□ 0.92
COL6A1-206ENST00000498614 TBX22Q9Y458 520 aa20.81■□□□□ 0.92
COL6A1-206ENST00000498614 PTPRUQ92729 1446 aa20.8■□□□□ 0.92
COL6A1-206ENST00000498614 FBLN1P23142 703 aa20.8■□□□□ 0.92
COL6A1-206ENST00000498614 RBM33Q96EV2 1170 aaKnown RBP20.8■□□□□ 0.92
COL6A1-206ENST00000498614 TBC1D2Q9BYX2 928 aa20.79■□□□□ 0.92
COL6A1-206ENST00000498614 UPF2Q9HAU5 1272 aaKnown RBP20.79■□□□□ 0.92
COL6A1-206ENST00000498614 RIPK4P57078 832 aa20.79■□□□□ 0.92
COL6A1-206ENST00000498614 ZKSCAN2Q63HK3 967 aa20.78■□□□□ 0.92
COL6A1-206ENST00000498614 SMC4Q9NTJ3 1288 aa20.78■□□□□ 0.92
COL6A1-206ENST00000498614 AAMPQ13685 434 aa20.78■□□□□ 0.92
COL6A1-206ENST00000498614 FTSJ3Q8IY81 847 aaKnown RBP20.78■□□□□ 0.92
COL6A1-206ENST00000498614 MVPQ14764 893 aaKnown RBP20.77■□□□□ 0.92
COL6A1-206ENST00000498614 PNPLA6Q8IY17 1366 aa20.77■□□□□ 0.92
COL6A1-206ENST00000498614 ROBO2Q9HCK4 1378 aa20.77■□□□□ 0.92
COL6A1-206ENST00000498614 DLC1Q96QB1 1528 aa20.76■□□□□ 0.91
COL6A1-206ENST00000498614 DZIP1LQ8IYY4 767 aaKnown RBP20.76■□□□□ 0.91
COL6A1-206ENST00000498614 EIF5BO60841 1220 aaKnown RBP20.75■□□□□ 0.91
COL6A1-206ENST00000498614 CT47B1P0C2W7 299 aaPredicted RBP20.75■□□□□ 0.91
COL6A1-206ENST00000498614 KCNA6P17658 529 aa20.75■□□□□ 0.91
COL6A1-206ENST00000498614 LMTK3Q96Q04 1460 aa20.75■□□□□ 0.91
COL6A1-206ENST00000498614 NPHP4O75161 1426 aaPredicted RBP20.75■□□□□ 0.91
COL6A1-206ENST00000498614 SSH1Q8WYL5 1049 aa20.74■□□□□ 0.91
COL6A1-206ENST00000498614 RWDD1Q9H446 243 aaPredicted RBP20.74■□□□□ 0.91
COL6A1-206ENST00000498614 POLKQ9UBT6 870 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms