RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 PLCH1Q4KWH8 1693 aa27.81■■■□□ 2.04
USP40-217ENST00000496298 ACEP12821 1306 aa27.8■■■□□ 2.04
USP40-217ENST00000496298 ROCK2O75116 1388 aaKnown RBP27.8■■■□□ 2.04
USP40-217ENST00000496298 FAM83GA6ND36 823 aa27.77■■■□□ 2.04
USP40-217ENST00000496298 PAK3O75914 559 aaPredicted RBP27.76■■■□□ 2.03
USP40-217ENST00000496298 PLEKHG5O94827 1062 aa27.76■■■□□ 2.03
USP40-217ENST00000496298 SRPK2P78362 688 aaKnown RBP27.76■■■□□ 2.03
USP40-217ENST00000496298 GLI3P10071 1580 aa27.76■■■□□ 2.03
USP40-217ENST00000496298 CABP2Q9NPB3 220 aa27.75■■■□□ 2.03
USP40-217ENST00000496298 RALGAPBQ86X10 1494 aa27.75■■■□□ 2.03
USP40-217ENST00000496298 PPIP5K1Q6PFW1 1433 aa27.74■■■□□ 2.03
USP40-217ENST00000496298 COL14A1Q05707 1796 aaKnown RBP27.73■■■□□ 2.03
USP40-217ENST00000496298 VPS72Q15906 364 aa27.73■■■□□ 2.03
USP40-217ENST00000496298 TONSLQ96HA7 1378 aa27.72■■■□□ 2.03
USP40-217ENST00000496298 EVC2Q86UK5 1308 aa27.71■■■□□ 2.03
USP40-217ENST00000496298 NRAPQ86VF7 1730 aa27.71■■■□□ 2.03
USP40-217ENST00000496298 BRD4O60885 1362 aaPredicted RBP27.7■■■□□ 2.02
USP40-217ENST00000496298 PHRF1Q9P1Y6 1649 aaKnown RBP27.7■■■□□ 2.02
USP40-217ENST00000496298 ATAD2Q6PL18 1390 aa27.68■■■□□ 2.02
USP40-217ENST00000496298 SBNO2Q9Y2G9 1366 aa27.66■■■□□ 2.02
USP40-217ENST00000496298 ONECUT3O60422 494 aaPredicted RBP27.66■■■□□ 2.02
USP40-217ENST00000496298 CABP1Q9NZU7 370 aa27.66■■■□□ 2.02
USP40-217ENST00000496298 BTG4Q9NY30 223 aa27.65■■■□□ 2.02
USP40-217ENST00000496298 BRWD3Q6RI45 1802 aa27.63■■■□□ 2.01
USP40-217ENST00000496298 ABTB2Q8N961 1025 aa27.63■■■□□ 2.01
USP40-217ENST00000496298 CARD11Q9BXL7 1154 aa27.63■■■□□ 2.01
USP40-217ENST00000496298 USP6P35125 1406 aa27.62■■■□□ 2.01
USP40-217ENST00000496298 USP19O94966 1318 aa27.62■■■□□ 2.01
USP40-217ENST00000496298 SSH2Q76I76 1423 aa27.61■■■□□ 2.01
USP40-217ENST00000496298 NUTM2GQ5VZR2 741 aa27.61■■■□□ 2.01
USP40-217ENST00000496298 PRDM11Q9NQV5 511 aa27.61■■■□□ 2.01
USP40-217ENST00000496298 KIAA0232Q92628 1395 aa27.6■■■□□ 2.01
USP40-217ENST00000496298 EP400Q96L91 3159 aa27.6■■■□□ 2.01
USP40-217ENST00000496298 NRKQ7Z2Y5 1582 aa27.59■■■□□ 2.01
USP40-217ENST00000496298 AKAP12Q02952 1782 aa27.58■■■□□ 2.01
USP40-217ENST00000496298 NLRP13Q86W25 1043 aa27.58■■■□□ 2.01
USP40-217ENST00000496298 SEPT12Q8IYM1 358 aa27.58■■■□□ 2.01
USP40-217ENST00000496298 CCDC9Q9Y3X0 531 aaKnown RBP27.58■■■□□ 2.01
USP40-217ENST00000496298 CPDO75976 1380 aa27.57■■■□□ 2
USP40-217ENST00000496298 ZNF692Q9BU19 519 aaPredicted RBP27.56■■■□□ 2
USP40-217ENST00000496298 ZC3H6P61129 1189 aaKnown RBP27.55■■■□□ 2
USP40-217ENST00000496298 SPATA31A5Q5VU36 1347 aa27.55■■■□□ 2
USP40-217ENST00000496298 SPATA31A7Q8IWB4 1347 aa27.55■■■□□ 2
USP40-217ENST00000496298 CPSF1Q10570 1443 aaKnown RBP27.54■■■□□ 2
USP40-217ENST00000496298 CCDC125Q86Z20 511 aa27.54■■■□□ 2
USP40-217ENST00000496298 CHRNA2Q15822 529 aa27.53■■■□□ 2
USP40-217ENST00000496298 GCP02774 474 aa27.52■■■□□ 2
USP40-217ENST00000496298 PIK3C2AO00443 1686 aa27.52■■■□□ 2
USP40-217ENST00000496298 LMO7Q8WWI1 1683 aa27.52■■■□□ 2
USP40-217ENST00000496298 SLIT3O75094 1523 aa27.51■■□□□ 1.99
USP40-217ENST00000496298 NLRP6P59044 892 aa27.49■■□□□ 1.99
USP40-217ENST00000496298 PUS7Q96PZ0 661 aaKnown RBP27.49■■□□□ 1.99
USP40-217ENST00000496298 CAMTA1Q9Y6Y1 1673 aa27.49■■□□□ 1.99
USP40-217ENST00000496298 TTC21BQ7Z4L5 1316 aa27.48■■□□□ 1.99
USP40-217ENST00000496298 FAM98CQ17RN3 349 aaKnown RBP27.48■■□□□ 1.99
USP40-217ENST00000496298 MON2Q7Z3U7 1717 aa27.47■■□□□ 1.99
USP40-217ENST00000496298 SPATA31A1Q5TZJ5 1347 aa27.47■■□□□ 1.99
USP40-217ENST00000496298 THSD7AQ9UPZ6 1657 aa27.47■■□□□ 1.99
USP40-217ENST00000496298 KRT27Q7Z3Y8 459 aa27.47■■□□□ 1.99
USP40-217ENST00000496298 TTC21AQ8NDW8 1320 aa27.46■■□□□ 1.99
USP40-217ENST00000496298 CLSPNQ9HAW4 1339 aa27.45■■□□□ 1.99
USP40-217ENST00000496298 TESK2Q96S53 571 aa27.45■■□□□ 1.98
USP40-217ENST00000496298 TIMELESSQ9UNS1 1208 aa27.44■■□□□ 1.98
USP40-217ENST00000496298 KTN1Q86UP2 1357 aaKnown RBP27.44■■□□□ 1.98
USP40-217ENST00000496298 CD163L1Q9NR16 1453 aa27.44■■□□□ 1.98
USP40-217ENST00000496298 BLMP54132 1417 aaPredicted RBP27.43■■□□□ 1.98
USP40-217ENST00000496298 STRN4Q9NRL3 753 aa27.43■■□□□ 1.98
USP40-217ENST00000496298 AATKQ6ZMQ8 1374 aa27.41■■□□□ 1.98
USP40-217ENST00000496298 ST20-MTHFSA0A0A6YYL1 179 aa27.41■■□□□ 1.98
USP40-217ENST00000496298 SLC24A1O60721 1099 aa27.41■■□□□ 1.98
USP40-217ENST00000496298 EVA1CP58658 441 aa27.41■■□□□ 1.98
USP40-217ENST00000496298 COL18A1P39060 1754 aa27.4■■□□□ 1.98
USP40-217ENST00000496298 A0A0G2JS52 829 aa27.39■■□□□ 1.98
USP40-217ENST00000496298 MYT1Q01538 1121 aa27.39■■□□□ 1.98
USP40-217ENST00000496298 COL5A2P05997 1499 aaPredicted RBP27.38■■□□□ 1.97
USP40-217ENST00000496298 USP54Q70EL1 1684 aa27.38■■□□□ 1.97
USP40-217ENST00000496298 BARGINQ6ZT62 677 aa27.38■■□□□ 1.97
USP40-217ENST00000496298 SLC12A5Q9H2X9 1139 aa27.38■■□□□ 1.97
USP40-217ENST00000496298 LARP1Q6PKG0 1096 aaKnown RBP27.37■■□□□ 1.97
USP40-217ENST00000496298 KCNH5Q8NCM2 988 aa27.37■■□□□ 1.97
USP40-217ENST00000496298 USP31Q70CQ4 1352 aa27.36■■□□□ 1.97
USP40-217ENST00000496298 PCGF6Q9BYE7 350 aa27.36■■□□□ 1.97
USP40-217ENST00000496298 ARHGEF25Q86VW2 580 aa27.35■■□□□ 1.97
USP40-217ENST00000496298 TMC1Q8TDI8 760 aa27.35■■□□□ 1.97
USP40-217ENST00000496298 HDGFL2Q7Z4V5 671 aaPredicted RBP27.34■■□□□ 1.97
USP40-217ENST00000496298 NFAT5O94916 1531 aa27.33■■□□□ 1.97
USP40-217ENST00000496298 TERF2IPQ9NYB0 399 aa27.33■■□□□ 1.97
USP40-217ENST00000496298 THRAP3Q9Y2W1 955 aaKnown RBP27.33■■□□□ 1.97
USP40-217ENST00000496298 NINLQ9Y2I6 1382 aa27.33■■□□□ 1.97
USP40-217ENST00000496298 TCP11L2Q8N4U5 519 aa27.32■■□□□ 1.96
USP40-217ENST00000496298 EDC4Q6P2E9 1401 aaKnown RBP27.32■■□□□ 1.96
USP40-217ENST00000496298 USP35Q9P2H5 1018 aa27.31■■□□□ 1.96
USP40-217ENST00000496298 USP47Q96K76 1375 aa27.31■■□□□ 1.96
USP40-217ENST00000496298 CRB1P82279 1406 aa27.31■■□□□ 1.96
USP40-217ENST00000496298 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.3■■□□□ 1.962e-6■□□□□ 9
USP40-217ENST00000496298 AXIN2Q9Y2T1 843 aa27.3■■□□□ 1.96
USP40-217ENST00000496298 A0A1W2PP64 1363 aa27.3■■□□□ 1.96
USP40-217ENST00000496298 RGPD5Q99666 1765 aa27.3■■□□□ 1.96
USP40-217ENST00000496298 SF3B2Q13435 895 aaKnown RBP27.29■■□□□ 1.96
USP40-217ENST00000496298 ZRANB1Q9UGI0 708 aa27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms