RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 UPF1Q92900 1129 aaKnown RBP eCLIP15.25■□□□□ 0.03
NELFE-213ENST00000494956 ACEP12821 1306 aa15.24■□□□□ 0.03
NELFE-213ENST00000494956 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.24■□□□□ 0.03
NELFE-213ENST00000494956 SRPK2P78362 688 aaKnown RBP15.24■□□□□ 0.03
NELFE-213ENST00000494956 FAM83GA6ND36 823 aa15.23■□□□□ 0.03
NELFE-213ENST00000494956 MSH5O43196 834 aa15.23■□□□□ 0.03
NELFE-213ENST00000494956 GLI3P10071 1580 aa15.23■□□□□ 0.03
NELFE-213ENST00000494956 UNC5CLQ8IV45 518 aa15.22■□□□□ 0.03
NELFE-213ENST00000494956 CCDC61Q9Y6R9 512 aa15.22■□□□□ 0.03
NELFE-213ENST00000494956 PPIP5K1Q6PFW1 1433 aa15.21■□□□□ 0.03
NELFE-213ENST00000494956 GJD4Q96KN9 370 aaPredicted RBP15.21■□□□□ 0.03
NELFE-213ENST00000494956 POLR3AO14802 1390 aaPredicted RBP15.21■□□□□ 0.02
NELFE-213ENST00000494956 PLEKHG3A1L390 1219 aa15.2■□□□□ 0.02
NELFE-213ENST00000494956 TONSLQ96HA7 1378 aa15.2■□□□□ 0.02
NELFE-213ENST00000494956 NRAPQ86VF7 1730 aa15.2■□□□□ 0.02
NELFE-213ENST00000494956 NWD2Q9ULI1 1742 aa15.2■□□□□ 0.02
NELFE-213ENST00000494956 RALGAPBQ86X10 1494 aa15.2■□□□□ 0.02
NELFE-213ENST00000494956 PHRF1Q9P1Y6 1649 aaKnown RBP15.19■□□□□ 0.02
NELFE-213ENST00000494956 BRWD3Q6RI45 1802 aa15.19■□□□□ 0.02
NELFE-213ENST00000494956 CABP1Q9NZU7 370 aa15.18■□□□□ 0.02
NELFE-213ENST00000494956 CCDC9Q9Y3X0 531 aaKnown RBP15.17■□□□□ 0.02
NELFE-213ENST00000494956 COL14A1Q05707 1796 aaKnown RBP15.16■□□□□ 0.02
NELFE-213ENST00000494956 CHRNA2Q15822 529 aa15.16■□□□□ 0.02
NELFE-213ENST00000494956 CARD11Q9BXL7 1154 aa15.16■□□□□ 0.02
NELFE-213ENST00000494956 BTG4Q9NY30 223 aa15.16■□□□□ 0.02
NELFE-213ENST00000494956 ZC3H6P61129 1189 aaKnown RBP15.15■□□□□ 0.02
NELFE-213ENST00000494956 EVC2Q86UK5 1308 aa15.15■□□□□ 0.02
NELFE-213ENST00000494956 KIAA0232Q92628 1395 aa15.14■□□□□ 0.01
NELFE-213ENST00000494956 VPS72Q15906 364 aa15.14■□□□□ 0.01
NELFE-213ENST00000494956 ABTB2Q8N961 1025 aa15.14■□□□□ 0.01
NELFE-213ENST00000494956 NRKQ7Z2Y5 1582 aa15.13■□□□□ 0.01
NELFE-213ENST00000494956 PRDM11Q9NQV5 511 aa15.13■□□□□ 0.01
NELFE-213ENST00000494956 USP6P35125 1406 aa15.12■□□□□ 0.01
NELFE-213ENST00000494956 AKAP12Q02952 1782 aa15.12■□□□□ 0.01
NELFE-213ENST00000494956 SEPT12Q8IYM1 358 aa15.12■□□□□ 0.01
NELFE-213ENST00000494956 ATAD2Q6PL18 1390 aa15.11■□□□□ 0.01
NELFE-213ENST00000494956 PCGF6Q9BYE7 350 aa15.11■□□□□ 0.01
NELFE-213ENST00000494956 PIK3C2AO00443 1686 aa15.1■□□□□ 0.01
NELFE-213ENST00000494956 FAM98CQ17RN3 349 aaKnown RBP15.1■□□□□ 0.01
NELFE-213ENST00000494956 PPP4R3CPQ6ZMV5 832 aa15.1■□□□□ 0.01
NELFE-213ENST00000494956 USP19O94966 1318 aa15.1■□□□□ 0.01
NELFE-213ENST00000494956 A0A0G2JS52 829 aa15.09■□□□□ 0.01
NELFE-213ENST00000494956 MYT1Q01538 1121 aa15.09■□□□□ 0.01
NELFE-213ENST00000494956 STRN4Q9NRL3 753 aa15.09■□□□□ 0.01
NELFE-213ENST00000494956 SSH2Q76I76 1423 aa15.09■□□□□ 0.01
NELFE-213ENST00000494956 ZBTB7CA1YPR0 619 aa15.08■□□□□ 0
NELFE-213ENST00000494956 CAMTA1Q9Y6Y1 1673 aa15.07■□□□□ 0
NELFE-213ENST00000494956 ONECUT3O60422 494 aaPredicted RBP15.07■□□□□ 0
NELFE-213ENST00000494956 GCP02774 474 aa15.07■□□□□ 0
NELFE-213ENST00000494956 NLRP6P59044 892 aa15.07■□□□□ 0
NELFE-213ENST00000494956 NLRP13Q86W25 1043 aa15.07■□□□□ 0
NELFE-213ENST00000494956 SPATA31A5Q5VU36 1347 aa15.07■□□□□ 0
NELFE-213ENST00000494956 SPATA31A7Q8IWB4 1347 aa15.07■□□□□ 0
NELFE-213ENST00000494956 LMO7Q8WWI1 1683 aa15.06■□□□□ 0
NELFE-213ENST00000494956 FAM182BQ5T319 152 aa15.06■□□□□ 0
NELFE-213ENST00000494956 SBNO2Q9Y2G9 1366 aa15.06■□□□□ 0
NELFE-213ENST00000494956 ST20-MTHFSA0A0A6YYL1 179 aa15.05■□□□□ -0
NELFE-213ENST00000494956 USP35Q9P2H5 1018 aa15.05■□□□□ -0
NELFE-213ENST00000494956 ZRANB1Q9UGI0 708 aa15.05■□□□□ -0
NELFE-213ENST00000494956 TTC21BQ7Z4L5 1316 aa15.05■□□□□ -0
NELFE-213ENST00000494956 CPSF1Q10570 1443 aaKnown RBP15.05■□□□□ -0
NELFE-213ENST00000494956 MON2Q7Z3U7 1717 aa15.05■□□□□ -0
NELFE-213ENST00000494956 CD163L1Q9NR16 1453 aa15.04■□□□□ -0
NELFE-213ENST00000494956 SPATA31A1Q5TZJ5 1347 aa15.04■□□□□ -0
NELFE-213ENST00000494956 SOX12O15370 315 aa15.04■□□□□ -0
NELFE-213ENST00000494956 KCNA4P22459 653 aa15.04■□□□□ -0
NELFE-213ENST00000494956 KRT27Q7Z3Y8 459 aa15.04■□□□□ -0
NELFE-213ENST00000494956 SLC12A5Q9H2X9 1139 aa15.04■□□□□ -0
NELFE-213ENST00000494956 THSD7AQ9UPZ6 1657 aa15.03■□□□□ -0
NELFE-213ENST00000494956 SLIT3O75094 1523 aa15.03■□□□□ -0
NELFE-213ENST00000494956 CPDO75976 1380 aa15.03■□□□□ -0
NELFE-213ENST00000494956 KTN1Q86UP2 1357 aaKnown RBP15.03■□□□□ -0
NELFE-213ENST00000494956 LARP1Q6PKG0 1096 aaKnown RBP15.03■□□□□ -0
NELFE-213ENST00000494956 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.03■□□□□ -0
NELFE-213ENST00000494956 TMC1Q8TDI8 760 aa15.03■□□□□ -0
NELFE-213ENST00000494956 TESK2Q96S53 571 aa15.03■□□□□ -0
NELFE-213ENST00000494956 RGPD5Q99666 1765 aa15.03■□□□□ -0
NELFE-213ENST00000494956 EP400Q96L91 3159 aa15.03■□□□□ -0
NELFE-213ENST00000494956 BRD4O60885 1362 aaPredicted RBP15.02■□□□□ -0
NELFE-213ENST00000494956 EVA1CP58658 441 aa15.02■□□□□ -0
NELFE-213ENST00000494956 ZNF692Q9BU19 519 aaPredicted RBP15.02■□□□□ -0
NELFE-213ENST00000494956 COL18A1P39060 1754 aa15.01□□□□□ -0.01
NELFE-213ENST00000494956 DEFB132Q7Z7B7 95 aa15□□□□□ -0.01
NELFE-213ENST00000494956 NME9Q86XW9 330 aa15□□□□□ -0.01
NELFE-213ENST00000494956 AXIN2Q9Y2T1 843 aa14.99□□□□□ -0.01
NELFE-213ENST00000494956 COL5A2P05997 1499 aaPredicted RBP14.99□□□□□ -0.01
NELFE-213ENST00000494956 USP47Q96K76 1375 aa14.98□□□□□ -0.01
NELFE-213ENST00000494956 TTC21AQ8NDW8 1320 aa14.98□□□□□ -0.01
NELFE-213ENST00000494956 BLMP54132 1417 aaPredicted RBP14.98□□□□□ -0.01
NELFE-213ENST00000494956 A0A1W2PP64 1363 aa14.98□□□□□ -0.01
NELFE-213ENST00000494956 NFAT5O94916 1531 aa14.97□□□□□ -0.01
NELFE-213ENST00000494956 CCDC125Q86Z20 511 aa14.96□□□□□ -0.01
NELFE-213ENST00000494956 AATKQ6ZMQ8 1374 aa14.96□□□□□ -0.02
NELFE-213ENST00000494956 HDGFL2Q7Z4V5 671 aaPredicted RBP14.95□□□□□ -0.02
NELFE-213ENST00000494956 ARHGEF25Q86VW2 580 aa14.95□□□□□ -0.02
NELFE-213ENST00000494956 TCP11L2Q8N4U5 519 aa14.95□□□□□ -0.02
NELFE-213ENST00000494956 USP54Q70EL1 1684 aa14.94□□□□□ -0.02
NELFE-213ENST00000494956 LTN1O94822 1766 aa14.94□□□□□ -0.02
NELFE-213ENST00000494956 BARGINQ6ZT62 677 aa14.94□□□□□ -0.02
NELFE-213ENST00000494956 CRB1P82279 1406 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms