RNA–Protein interactions for RNA: ENST00000494646.1

MSH5-218, Transcript of mutS homolog 5, humanhuman

TSL 4

Gene MSH5, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-218ENST00000494646 ABCA3Q99758 1704 aa13.78□□□□□ -0.2
MSH5-218ENST00000494646 ATP7BP35670 1465 aa13.77□□□□□ -0.21
MSH5-218ENST00000494646 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.77□□□□□ -0.21
MSH5-218ENST00000494646 BTG4Q9NY30 223 aa13.77□□□□□ -0.21
MSH5-218ENST00000494646 PLCH1Q4KWH8 1693 aa13.76□□□□□ -0.21
MSH5-218ENST00000494646 PLEKHG3A1L390 1219 aa13.76□□□□□ -0.21
MSH5-218ENST00000494646 VPS72Q15906 364 aa13.76□□□□□ -0.21
MSH5-218ENST00000494646 EP400Q96L91 3159 aa13.76□□□□□ -0.21
MSH5-218ENST00000494646 BRWD3Q6RI45 1802 aa13.76□□□□□ -0.21
MSH5-218ENST00000494646 GLI3P10071 1580 aa13.75□□□□□ -0.21
MSH5-218ENST00000494646 RALGAPBQ86X10 1494 aa13.75□□□□□ -0.21
MSH5-218ENST00000494646 ATAD2Q6PL18 1390 aa13.75□□□□□ -0.21
MSH5-218ENST00000494646 NWD2Q9ULI1 1742 aa13.74□□□□□ -0.21
MSH5-218ENST00000494646 ZC3H6P61129 1189 aaKnown RBP13.74□□□□□ -0.21
MSH5-218ENST00000494646 SEPT12Q8IYM1 358 aa13.74□□□□□ -0.21
MSH5-218ENST00000494646 ABTB2Q8N961 1025 aa13.74□□□□□ -0.21
MSH5-218ENST00000494646 QRICH2Q9H0J4 1663 aa13.74□□□□□ -0.21
MSH5-218ENST00000494646 TRPM1Q7Z4N2 1603 aa13.73□□□□□ -0.21
MSH5-218ENST00000494646 A0A0G2JS52 829 aa13.73□□□□□ -0.21
MSH5-218ENST00000494646 MYT1Q01538 1121 aa13.73□□□□□ -0.21
MSH5-218ENST00000494646 TRIM26Q12899 539 aaPredicted RBP13.73□□□□□ -0.21
MSH5-218ENST00000494646 CHRNA2Q15822 529 aa13.73□□□□□ -0.21
MSH5-218ENST00000494646 CABP1Q9NZU7 370 aa13.73□□□□□ -0.21
MSH5-218ENST00000494646 ROCK2O75116 1388 aaKnown RBP13.72□□□□□ -0.21
MSH5-218ENST00000494646 PRDM11Q9NQV5 511 aa13.72□□□□□ -0.21
MSH5-218ENST00000494646 TOPAZ1Q8N9V7 1692 aa13.72□□□□□ -0.21
MSH5-218ENST00000494646 PPIP5K1Q6PFW1 1433 aa13.72□□□□□ -0.21
MSH5-218ENST00000494646 POLR3AO14802 1390 aaPredicted RBP13.71□□□□□ -0.21
MSH5-218ENST00000494646 FAM98CQ17RN3 349 aaKnown RBP13.71□□□□□ -0.21
MSH5-218ENST00000494646 COL14A1Q05707 1796 aaKnown RBP13.71□□□□□ -0.22
MSH5-218ENST00000494646 CRYBG1Q9Y4K1 1723 aa13.7□□□□□ -0.22
MSH5-218ENST00000494646 ONECUT3O60422 494 aaPredicted RBP13.7□□□□□ -0.22
MSH5-218ENST00000494646 STRN4Q9NRL3 753 aa13.7□□□□□ -0.22
MSH5-218ENST00000494646 KIAA0232Q92628 1395 aa13.7□□□□□ -0.22
MSH5-218ENST00000494646 EVC2Q86UK5 1308 aa13.69□□□□□ -0.22
MSH5-218ENST00000494646 NRAPQ86VF7 1730 aa13.69□□□□□ -0.22
MSH5-218ENST00000494646 ZBTB7CA1YPR0 619 aa13.68□□□□□ -0.22
MSH5-218ENST00000494646 EVA1CP58658 441 aa13.68□□□□□ -0.22
MSH5-218ENST00000494646 KRT27Q7Z3Y8 459 aa13.68□□□□□ -0.22
MSH5-218ENST00000494646 CARD11Q9BXL7 1154 aa13.68□□□□□ -0.22
MSH5-218ENST00000494646 PHRF1Q9P1Y6 1649 aaKnown RBP13.68□□□□□ -0.22
MSH5-218ENST00000494646 NLRP6P59044 892 aa13.67□□□□□ -0.22
MSH5-218ENST00000494646 NLRP13Q86W25 1043 aa13.67□□□□□ -0.22
MSH5-218ENST00000494646 CCDC125Q86Z20 511 aa13.67□□□□□ -0.22
MSH5-218ENST00000494646 SPATA31A5Q5VU36 1347 aa13.66□□□□□ -0.22
MSH5-218ENST00000494646 SPATA31A7Q8IWB4 1347 aa13.66□□□□□ -0.22
MSH5-218ENST00000494646 FAM182BQ5T319 152 aa13.66□□□□□ -0.22
MSH5-218ENST00000494646 USP35Q9P2H5 1018 aa13.66□□□□□ -0.22
MSH5-218ENST00000494646 TONSLQ96HA7 1378 aa13.66□□□□□ -0.22
MSH5-218ENST00000494646 GCP02774 474 aa13.65□□□□□ -0.22
MSH5-218ENST00000494646 DEFB132Q7Z7B7 95 aa13.65□□□□□ -0.22
MSH5-218ENST00000494646 SF3B2Q13435 895 aaKnown RBP13.63□□□□□ -0.23
MSH5-218ENST00000494646 SPATA31A1Q5TZJ5 1347 aa13.63□□□□□ -0.23
MSH5-218ENST00000494646 LARP1Q6PKG0 1096 aaKnown RBP13.62□□□□□ -0.23
MSH5-218ENST00000494646 ZNF692Q9BU19 519 aaPredicted RBP13.62□□□□□ -0.23
MSH5-218ENST00000494646 USP6P35125 1406 aa13.62□□□□□ -0.23
MSH5-218ENST00000494646 CAMTA1Q9Y6Y1 1673 aa13.61□□□□□ -0.23
MSH5-218ENST00000494646 SOX12O15370 315 aa13.61□□□□□ -0.23
MSH5-218ENST00000494646 TMC1Q8TDI8 760 aa13.61□□□□□ -0.23
MSH5-218ENST00000494646 ZRANB1Q9UGI0 708 aa13.61□□□□□ -0.23
MSH5-218ENST00000494646 USP19O94966 1318 aa13.61□□□□□ -0.23
MSH5-218ENST00000494646 TTC21BQ7Z4L5 1316 aa13.61□□□□□ -0.23
MSH5-218ENST00000494646 BLMP54132 1417 aaPredicted RBP13.6□□□□□ -0.23
MSH5-218ENST00000494646 NRKQ7Z2Y5 1582 aa13.6□□□□□ -0.23
MSH5-218ENST00000494646 BRD4O60885 1362 aaPredicted RBP13.59□□□□□ -0.23
MSH5-218ENST00000494646 AKAP12Q02952 1782 aa13.59□□□□□ -0.23
MSH5-218ENST00000494646 CPDO75976 1380 aa13.58□□□□□ -0.23
MSH5-218ENST00000494646 KTN1Q86UP2 1357 aaKnown RBP13.58□□□□□ -0.23
MSH5-218ENST00000494646 SSH2Q76I76 1423 aa13.58□□□□□ -0.24
MSH5-218ENST00000494646 SRCAPQ6ZRS2 3230 aa13.58□□□□□ -0.24
MSH5-218ENST00000494646 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.58□□□□□ -0.24
MSH5-218ENST00000494646 PCGF6Q9BYE7 350 aa13.58□□□□□ -0.24
MSH5-218ENST00000494646 SLC12A5Q9H2X9 1139 aa13.58□□□□□ -0.24
MSH5-218ENST00000494646 RGPD5Q99666 1765 aa13.58□□□□□ -0.24
MSH5-218ENST00000494646 PIK3C2AO00443 1686 aa13.57□□□□□ -0.24
MSH5-218ENST00000494646 ST20-MTHFSA0A0A6YYL1 179 aa13.57□□□□□ -0.24
MSH5-218ENST00000494646 AXIN2Q9Y2T1 843 aa13.57□□□□□ -0.24
MSH5-218ENST00000494646 EN1Q05925 392 aaPredicted RBP13.56□□□□□ -0.24
MSH5-218ENST00000494646 PDE3BQ13370 1112 aa13.56□□□□□ -0.24
MSH5-218ENST00000494646 TCP11L2Q8N4U5 519 aa13.56□□□□□ -0.24
MSH5-218ENST00000494646 LMO7Q8WWI1 1683 aa13.56□□□□□ -0.24
MSH5-218ENST00000494646 BAG6P46379 1132 aa13.55□□□□□ -0.24
MSH5-218ENST00000494646 BARGINQ6ZT62 677 aa13.55□□□□□ -0.24
MSH5-218ENST00000494646 THSD7AQ9UPZ6 1657 aa13.55□□□□□ -0.24
MSH5-218ENST00000494646 TTC21AQ8NDW8 1320 aa13.55□□□□□ -0.24
MSH5-218ENST00000494646 CPSF1Q10570 1443 aaKnown RBP13.55□□□□□ -0.24
MSH5-218ENST00000494646 TRIM37O94972 964 aa13.54□□□□□ -0.24
MSH5-218ENST00000494646 TOM1L2Q6ZVM7 507 aa13.54□□□□□ -0.24
MSH5-218ENST00000494646 HDGFL2Q7Z4V5 671 aaPredicted RBP13.54□□□□□ -0.24
MSH5-218ENST00000494646 ARHGEF25Q86VW2 580 aa13.54□□□□□ -0.24
MSH5-218ENST00000494646 NME9Q86XW9 330 aa13.54□□□□□ -0.24
MSH5-218ENST00000494646 KCNH5Q8NCM2 988 aa13.54□□□□□ -0.24
MSH5-218ENST00000494646 SBNO2Q9Y2G9 1366 aa13.54□□□□□ -0.24
MSH5-218ENST00000494646 SLIT3O75094 1523 aa13.54□□□□□ -0.24
MSH5-218ENST00000494646 COL18A1P39060 1754 aa13.53□□□□□ -0.24
MSH5-218ENST00000494646 FAM196AQ6ZSG2 479 aa13.53□□□□□ -0.24
MSH5-218ENST00000494646 THRAP3Q9Y2W1 955 aaKnown RBP13.53□□□□□ -0.24
MSH5-218ENST00000494646 AATKQ6ZMQ8 1374 aa13.53□□□□□ -0.24
MSH5-218ENST00000494646 COL5A2P05997 1499 aaPredicted RBP13.53□□□□□ -0.24
MSH5-218ENST00000494646 TESK2Q96S53 571 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms