RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 FAM182BQ5T319 152 aa20.66■□□□□ 0.9
VARS-227ENST00000489979 ACIN1Q9UKV3 1341 aaKnown RBP20.66■□□□□ 0.9
VARS-227ENST00000489979 RGPD1P0DJD0 1748 aa20.66■□□□□ 0.9
VARS-227ENST00000489979 SPATA31A5Q5VU36 1347 aa20.65■□□□□ 0.9
VARS-227ENST00000489979 SPATA31A7Q8IWB4 1347 aa20.65■□□□□ 0.9
VARS-227ENST00000489979 EIF3AQ14152 1382 aaKnown RBP20.64■□□□□ 0.89
VARS-227ENST00000489979 TULP4Q9NRJ4 1543 aa20.63■□□□□ 0.89
VARS-227ENST00000489979 CRYBG1Q9Y4K1 1723 aa20.63■□□□□ 0.89
VARS-227ENST00000489979 WASLO00401 505 aaPredicted RBP20.62■□□□□ 0.89
VARS-227ENST00000489979 PAK3O75914 559 aaPredicted RBP20.62■□□□□ 0.89
VARS-227ENST00000489979 NGDNQ8NEJ9 315 aaKnown RBP20.62■□□□□ 0.89
VARS-227ENST00000489979 THSD7AQ9UPZ6 1657 aa20.61■□□□□ 0.89
VARS-227ENST00000489979 PRDM11Q9NQV5 511 aa20.61■□□□□ 0.89
VARS-227ENST00000489979 R3HDM1Q15032 1099 aaKnown RBP20.6■□□□□ 0.89
VARS-227ENST00000489979 KDM2AQ9Y2K7 1162 aa20.6■□□□□ 0.89
VARS-227ENST00000489979 TNS1Q9HBL0 1735 aaKnown RBP20.59■□□□□ 0.89
VARS-227ENST00000489979 DISP2A7MBM2 1401 aa20.58■□□□□ 0.88
VARS-227ENST00000489979 EZH2Q15910 746 aaKnown RBP20.57■□□□□ 0.88
VARS-227ENST00000489979 DCAF11Q8TEB1 546 aa20.56■□□□□ 0.88
VARS-227ENST00000489979 KIAA0232Q92628 1395 aa20.56■□□□□ 0.88
VARS-227ENST00000489979 SPATA31A1Q5TZJ5 1347 aa20.55■□□□□ 0.88
VARS-227ENST00000489979 CHRNA2Q15822 529 aa20.55■□□□□ 0.88
VARS-227ENST00000489979 RAB3GAP2Q9H2M9 1393 aa20.55■□□□□ 0.88
VARS-227ENST00000489979 ITSN1Q15811 1721 aa20.55■□□□□ 0.88
VARS-227ENST00000489979 TRIM37O94972 964 aa20.54■□□□□ 0.88
VARS-227ENST00000489979 NUDT16Q96DE0 195 aaKnown RBP20.54■□□□□ 0.88
VARS-227ENST00000489979 STRN4Q9NRL3 753 aa20.54■□□□□ 0.88
VARS-227ENST00000489979 PHRF1Q9P1Y6 1649 aaKnown RBP20.53■□□□□ 0.88
VARS-227ENST00000489979 FAM196AQ6ZSG2 479 aa20.53■□□□□ 0.88
VARS-227ENST00000489979 ATP7BP35670 1465 aa20.53■□□□□ 0.88
VARS-227ENST00000489979 ZC3H6P61129 1189 aaKnown RBP20.52■□□□□ 0.88
VARS-227ENST00000489979 NUTM2GQ5VZR2 741 aa20.52■□□□□ 0.88
VARS-227ENST00000489979 CAMKK2Q96RR4 588 aa20.52■□□□□ 0.88
VARS-227ENST00000489979 ARHGEF28Q8N1W1 1705 aaKnown RBP20.52■□□□□ 0.88
VARS-227ENST00000489979 USP35Q9P2H5 1018 aa20.5■□□□□ 0.87
VARS-227ENST00000489979 APBA3O96018 575 aa20.49■□□□□ 0.87
VARS-227ENST00000489979 STAC3Q96MF2 364 aa20.48■□□□□ 0.87
VARS-227ENST00000489979 CDK19Q9BWU1 502 aa20.48■□□□□ 0.87
VARS-227ENST00000489979 EVA1CP58658 441 aa20.47■□□□□ 0.87
VARS-227ENST00000489979 SSH2Q76I76 1423 aa20.46■□□□□ 0.87
VARS-227ENST00000489979 PDE3BQ13370 1112 aa20.46■□□□□ 0.87
VARS-227ENST00000489979 ACEP12821 1306 aa20.46■□□□□ 0.87
VARS-227ENST00000489979 PARD3Q8TEW0 1356 aa20.46■□□□□ 0.87
VARS-227ENST00000489979 NBPF8Q3BBV2 869 aa20.45■□□□□ 0.86
VARS-227ENST00000489979 BARGINQ6ZT62 677 aa20.45■□□□□ 0.86
VARS-227ENST00000489979 POLR3AO14802 1390 aaPredicted RBP20.45■□□□□ 0.86
VARS-227ENST00000489979 LARP1Q6PKG0 1096 aaKnown RBP20.44■□□□□ 0.86
VARS-227ENST00000489979 TOPAZ1Q8N9V7 1692 aa20.44■□□□□ 0.86
VARS-227ENST00000489979 RREB1Q92766 1687 aa20.44■□□□□ 0.86
VARS-227ENST00000489979 NRKQ7Z2Y5 1582 aa20.43■□□□□ 0.86
VARS-227ENST00000489979 CAMTA1Q9Y6Y1 1673 aa20.43■□□□□ 0.86
VARS-227ENST00000489979 CCDC61Q9Y6R9 512 aa20.43■□□□□ 0.86
VARS-227ENST00000489979 NUP188Q5SRE5 1749 aa20.42■□□□□ 0.86
VARS-227ENST00000489979 ABTB2Q8N961 1025 aa20.42■□□□□ 0.86
VARS-227ENST00000489979 PLEKHG3A1L390 1219 aa20.41■□□□□ 0.86
VARS-227ENST00000489979 TCP11L2Q8N4U5 519 aa20.41■□□□□ 0.86
VARS-227ENST00000489979 LMO7Q8WWI1 1683 aa20.4■□□□□ 0.86
VARS-227ENST00000489979 CPDO75976 1380 aa20.39■□□□□ 0.85
VARS-227ENST00000489979 NBPF14Q5TI25 921 aa20.39■□□□□ 0.85
VARS-227ENST00000489979 USP19O94966 1318 aa20.38■□□□□ 0.85
VARS-227ENST00000489979 THRAP3Q9Y2W1 955 aaKnown RBP20.36■□□□□ 0.85
VARS-227ENST00000489979 GCP02774 474 aa20.35■□□□□ 0.85
VARS-227ENST00000489979 NLRP13Q86W25 1043 aa20.35■□□□□ 0.85
VARS-227ENST00000489979 PARP4Q9UKK3 1724 aaKnown RBP20.35■□□□□ 0.85
VARS-227ENST00000489979 KIAA1210Q9ULL0 1709 aa20.34■□□□□ 0.85
VARS-227ENST00000489979 COL5A2P05997 1499 aaPredicted RBP20.34■□□□□ 0.85
VARS-227ENST00000489979 PPIP5K1Q6PFW1 1433 aa20.33■□□□□ 0.84
VARS-227ENST00000489979 YY1P25490 414 aa20.32■□□□□ 0.84
VARS-227ENST00000489979 SRPK2P78362 688 aaKnown RBP20.32■□□□□ 0.84
VARS-227ENST00000489979 NBPF1Q3BBV0 1214 aa20.32■□□□□ 0.84
VARS-227ENST00000489979 ZBTB7CA1YPR0 619 aa20.31■□□□□ 0.84
VARS-227ENST00000489979 SPON1Q9HCB6 807 aa20.31■□□□□ 0.84
VARS-227ENST00000489979 PPP1R1BQ9UD71 204 aaPredicted RBP20.31■□□□□ 0.84
VARS-227ENST00000489979 CRB1P82279 1406 aa20.3■□□□□ 0.84
VARS-227ENST00000489979 CABP2Q9NPB3 220 aa20.3■□□□□ 0.84
VARS-227ENST00000489979 C11orf95C9JLR9 678 aaPredicted RBP20.29■□□□□ 0.84
VARS-227ENST00000489979 KCNQ2O43526 872 aa20.29■□□□□ 0.84
VARS-227ENST00000489979 PEAK1Q9H792 1746 aa20.29■□□□□ 0.84
VARS-227ENST00000489979 OVOS2A0A0G2JMS6 1433 aa20.28■□□□□ 0.84
VARS-227ENST00000489979 OVOS2A0A0J9YW53 1432 aa20.28■□□□□ 0.84
VARS-227ENST00000489979 OVOS2Q6IE36 1432 aa20.28■□□□□ 0.84
VARS-227ENST00000489979 SBF2Q86WG5 1849 aa20.28■□□□□ 0.84
VARS-227ENST00000489979 CENPJQ9HC77 1338 aaPredicted RBP20.27■□□□□ 0.84
VARS-227ENST00000489979 BRD4O60885 1362 aaPredicted RBP20.27■□□□□ 0.84
VARS-227ENST00000489979 NLRP6P59044 892 aa20.26■□□□□ 0.83
VARS-227ENST00000489979 LRRC37A3O60309 1634 aa20.26■□□□□ 0.83
VARS-227ENST00000489979 RGPD3A6NKT7 1758 aaPredicted RBP20.26■□□□□ 0.83
VARS-227ENST00000489979 RGPD4Q7Z3J3 1758 aa20.26■□□□□ 0.83
VARS-227ENST00000489979 AATKQ6ZMQ8 1374 aa20.25■□□□□ 0.83
VARS-227ENST00000489979 PLSCR1O15162 318 aa20.25■□□□□ 0.83
VARS-227ENST00000489979 DDB1Q16531 1140 aa20.25■□□□□ 0.83
VARS-227ENST00000489979 CABP1Q9NZU7 370 aa20.25■□□□□ 0.83
VARS-227ENST00000489979 NINLQ9Y2I6 1382 aa20.24■□□□□ 0.83
VARS-227ENST00000489979 SLIT3O75094 1523 aa20.24■□□□□ 0.83
VARS-227ENST00000489979 TOM1L2Q6ZVM7 507 aa20.24■□□□□ 0.83
VARS-227ENST00000489979 USP6P35125 1406 aa20.24■□□□□ 0.83
VARS-227ENST00000489979 QRICH2Q9H0J4 1663 aa20.23■□□□□ 0.83
VARS-227ENST00000489979 DCAF8L1A6NGE4 600 aa20.23■□□□□ 0.83
VARS-227ENST00000489979 ANO8Q9HCE9 1232 aaPredicted RBP20.23■□□□□ 0.83
VARS-227ENST00000489979 COL18A1P39060 1754 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms