RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 SEPT12Q8IYM1 358 aa26.87■■□□□ 1.89
HDAC6-231ENST00000488905 CCDC9Q9Y3X0 531 aaKnown RBP26.87■■□□□ 1.89
HDAC6-231ENST00000488905 NGDNQ8NEJ9 315 aaKnown RBP26.86■■□□□ 1.89
HDAC6-231ENST00000488905 ZRANB1Q9UGI0 708 aa26.84■■□□□ 1.89
HDAC6-231ENST00000488905 ONECUT3O60422 494 aaPredicted RBP26.83■■□□□ 1.89
HDAC6-231ENST00000488905 BTG4Q9NY30 223 aa26.82■■□□□ 1.88
HDAC6-231ENST00000488905 NUDT16Q96DE0 195 aaKnown RBP26.81■■□□□ 1.88
HDAC6-231ENST00000488905 PAK3O75914 559 aaPredicted RBP26.8■■□□□ 1.88
HDAC6-231ENST00000488905 KRT27Q7Z3Y8 459 aa26.79■■□□□ 1.88
HDAC6-231ENST00000488905 THSD7AQ9UPZ6 1657 aa26.79■■□□□ 1.88
HDAC6-231ENST00000488905 QRICH2Q9H0J4 1663 aa26.77■■□□□ 1.88
HDAC6-231ENST00000488905 POLR3AO14802 1390 aaPredicted RBP26.77■■□□□ 1.88
HDAC6-231ENST00000488905 A0A0G2JS52 829 aa26.76■■□□□ 1.87
HDAC6-231ENST00000488905 MYT1Q01538 1121 aa26.76■■□□□ 1.87
HDAC6-231ENST00000488905 CDK19Q9BWU1 502 aa26.76■■□□□ 1.87
HDAC6-231ENST00000488905 FAM98CQ17RN3 349 aaKnown RBP26.75■■□□□ 1.87
HDAC6-231ENST00000488905 RGPD1P0DJD0 1748 aa26.75■■□□□ 1.87
HDAC6-231ENST00000488905 NRKQ7Z2Y5 1582 aa26.75■■□□□ 1.87
HDAC6-231ENST00000488905 SF3B2Q13435 895 aaKnown RBP26.74■■□□□ 1.87
HDAC6-231ENST00000488905 PRDM11Q9NQV5 511 aa26.74■■□□□ 1.87
HDAC6-231ENST00000488905 DEFB132Q7Z7B7 95 aa26.73■■□□□ 1.87
HDAC6-231ENST00000488905 KIAA0232Q92628 1395 aa26.72■■□□□ 1.87
HDAC6-231ENST00000488905 SPATA31A5Q5VU36 1347 aa26.72■■□□□ 1.87
HDAC6-231ENST00000488905 SPATA31A7Q8IWB4 1347 aa26.72■■□□□ 1.87
HDAC6-231ENST00000488905 NBPF1Q3BBV0 1214 aa26.71■■□□□ 1.87
HDAC6-231ENST00000488905 ACEP12821 1306 aa26.7■■□□□ 1.87
HDAC6-231ENST00000488905 CCDC61Q9Y6R9 512 aa26.7■■□□□ 1.86
HDAC6-231ENST00000488905 TNS1Q9HBL0 1735 aaKnown RBP26.69■■□□□ 1.86
HDAC6-231ENST00000488905 PLEKHG3A1L390 1219 aa26.67■■□□□ 1.86
HDAC6-231ENST00000488905 NBPF8Q3BBV2 869 aa26.67■■□□□ 1.86
HDAC6-231ENST00000488905 CENPJQ9HC77 1338 aaPredicted RBP26.66■■□□□ 1.86
HDAC6-231ENST00000488905 TRPM1Q7Z4N2 1603 aa26.66■■□□□ 1.86
HDAC6-231ENST00000488905 LMO7Q8WWI1 1683 aa26.66■■□□□ 1.86
HDAC6-231ENST00000488905 PPIP5K1Q6PFW1 1433 aa26.65■■□□□ 1.86
HDAC6-231ENST00000488905 CHRNA2Q15822 529 aa26.65■■□□□ 1.86
HDAC6-231ENST00000488905 NUTM2GQ5VZR2 741 aa26.65■■□□□ 1.86
HDAC6-231ENST00000488905 SPATA31A1Q5TZJ5 1347 aa26.63■■□□□ 1.85
HDAC6-231ENST00000488905 ZC3H6P61129 1189 aaKnown RBP26.62■■□□□ 1.85
HDAC6-231ENST00000488905 SRPK2P78362 688 aaKnown RBP26.62■■□□□ 1.85
HDAC6-231ENST00000488905 USP19O94966 1318 aa26.62■■□□□ 1.85
HDAC6-231ENST00000488905 LRP5O75197 1615 aa26.61■■□□□ 1.85
HDAC6-231ENST00000488905 BAG6P46379 1132 aa26.61■■□□□ 1.85
HDAC6-231ENST00000488905 STRN4Q9NRL3 753 aa26.61■■□□□ 1.85
HDAC6-231ENST00000488905 SSH2Q76I76 1423 aa26.6■■□□□ 1.85
HDAC6-231ENST00000488905 ABTB2Q8N961 1025 aa26.6■■□□□ 1.85
HDAC6-231ENST00000488905 CAMTA1Q9Y6Y1 1673 aa26.6■■□□□ 1.85
HDAC6-231ENST00000488905 CPDO75976 1380 aa26.59■■□□□ 1.85
HDAC6-231ENST00000488905 FAM182BQ5T319 152 aa26.59■■□□□ 1.85
HDAC6-231ENST00000488905 CABP2Q9NPB3 220 aa26.58■■□□□ 1.85
HDAC6-231ENST00000488905 DISP2A7MBM2 1401 aa26.57■■□□□ 1.84
HDAC6-231ENST00000488905 BRD4O60885 1362 aaPredicted RBP26.57■■□□□ 1.84
HDAC6-231ENST00000488905 L3MBTL2Q969R5 705 aa26.56■■□□□ 1.84
HDAC6-231ENST00000488905 PIK3C2AO00443 1686 aa26.55■■□□□ 1.84
HDAC6-231ENST00000488905 USP6P35125 1406 aa26.55■■□□□ 1.84
HDAC6-231ENST00000488905 AKAP12Q02952 1782 aa26.53■■□□□ 1.84
HDAC6-231ENST00000488905 SLIT3O75094 1523 aa26.53■■□□□ 1.84
HDAC6-231ENST00000488905 PARP4Q9UKK3 1724 aaKnown RBP26.53■■□□□ 1.84
HDAC6-231ENST00000488905 NLRP13Q86W25 1043 aa26.52■■□□□ 1.84
HDAC6-231ENST00000488905 COL5A2P05997 1499 aaPredicted RBP26.51■■□□□ 1.83
HDAC6-231ENST00000488905 EVA1CP58658 441 aa26.51■■□□□ 1.83
HDAC6-231ENST00000488905 EN1Q05925 392 aaPredicted RBP26.51■■□□□ 1.83
HDAC6-231ENST00000488905 USP35Q9P2H5 1018 aa26.51■■□□□ 1.83
HDAC6-231ENST00000488905 BARGINQ6ZT62 677 aa26.5■■□□□ 1.83
HDAC6-231ENST00000488905 GCP02774 474 aa26.49■■□□□ 1.83
HDAC6-231ENST00000488905 LARP1Q6PKG0 1096 aaKnown RBP26.49■■□□□ 1.83
HDAC6-231ENST00000488905 CABP1Q9NZU7 370 aa26.49■■□□□ 1.83
HDAC6-231ENST00000488905 ROCK2O75116 1388 aaKnown RBP26.48■■□□□ 1.83
HDAC6-231ENST00000488905 SIN3AQ96ST3 1273 aa26.48■■□□□ 1.83
HDAC6-231ENST00000488905 WNK3Q9BYP7 1800 aa26.48■■□□□ 1.83
HDAC6-231ENST00000488905 RREB1Q92766 1687 aa26.47■■□□□ 1.83
HDAC6-231ENST00000488905 EVC2Q86UK5 1308 aa26.47■■□□□ 1.83
HDAC6-231ENST00000488905 PSDA5PKW4 1024 aaPredicted RBP26.47■■□□□ 1.83
HDAC6-231ENST00000488905 FAM196AQ6ZSG2 479 aa26.47■■□□□ 1.83
HDAC6-231ENST00000488905 COL18A1P39060 1754 aa26.46■■□□□ 1.83
HDAC6-231ENST00000488905 TCP11L2Q8N4U5 519 aa26.45■■□□□ 1.82
HDAC6-231ENST00000488905 LRRC37A3O60309 1634 aa26.43■■□□□ 1.82
HDAC6-231ENST00000488905 NUP188Q5SRE5 1749 aa26.43■■□□□ 1.82
HDAC6-231ENST00000488905 CRB1P82279 1406 aa26.43■■□□□ 1.82
HDAC6-231ENST00000488905 TRIM37O94972 964 aa26.43■■□□□ 1.82
HDAC6-231ENST00000488905 NLRP6P59044 892 aa26.42■■□□□ 1.82
HDAC6-231ENST00000488905 THRAP3Q9Y2W1 955 aaKnown RBP26.42■■□□□ 1.82
HDAC6-231ENST00000488905 MON2Q7Z3U7 1717 aa26.42■■□□□ 1.82
HDAC6-231ENST00000488905 RGPD5Q99666 1765 aa26.41■■□□□ 1.82
HDAC6-231ENST00000488905 PDE3BQ13370 1112 aa26.41■■□□□ 1.82
HDAC6-231ENST00000488905 NEUROD1Q13562 356 aa26.41■■□□□ 1.82
HDAC6-231ENST00000488905 EZH2Q15910 746 aaKnown RBP26.41■■□□□ 1.82
HDAC6-231ENST00000488905 AATKQ6ZMQ8 1374 aa26.41■■□□□ 1.82
HDAC6-231ENST00000488905 PARD3Q8TEW0 1356 aa26.41■■□□□ 1.82
HDAC6-231ENST00000488905 PEAK1Q9H792 1746 aa26.4■■□□□ 1.82
HDAC6-231ENST00000488905 SBF2Q86WG5 1849 aa26.39■■□□□ 1.82
HDAC6-231ENST00000488905 ZBTB7CA1YPR0 619 aa26.39■■□□□ 1.82
HDAC6-231ENST00000488905 CAMKK2Q96RR4 588 aa26.38■■□□□ 1.81
HDAC6-231ENST00000488905 CPSF1Q10570 1443 aaKnown RBP26.38■■□□□ 1.81
HDAC6-231ENST00000488905 R3HDM1Q15032 1099 aaKnown RBP26.37■■□□□ 1.81
HDAC6-231ENST00000488905 APBA3O96018 575 aa26.36■■□□□ 1.81
HDAC6-231ENST00000488905 RGPD3A6NKT7 1758 aaPredicted RBP26.35■■□□□ 1.81
HDAC6-231ENST00000488905 RGPD4Q7Z3J3 1758 aa26.35■■□□□ 1.81
HDAC6-231ENST00000488905 USP54Q70EL1 1684 aa26.34■■□□□ 1.81
HDAC6-231ENST00000488905 NFAT5O94916 1531 aa26.34■■□□□ 1.81
HDAC6-231ENST00000488905 SBNO2Q9Y2G9 1366 aa26.34■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 146.2 ms