RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 IPO8O15397 1037 aaKnown RBP7.66□□□□□ -1.18
VPS13D-209ENST00000487188 LETM1O95202 739 aaPredicted RBP7.66□□□□□ -1.18
VPS13D-209ENST00000487188 U2AF1L5P0DN76 240 aaPredicted RBP7.66□□□□□ -1.18
VPS13D-209ENST00000487188 U2AF1Q01081 240 aaKnown RBP eCLIP7.66□□□□□ -1.182e-10■■□□□ 13.9
VPS13D-209ENST00000487188 RBM42Q9BTD8 480 aaKnown RBP7.66□□□□□ -1.18
VPS13D-209ENST00000487188 TRPM1Q7Z4N2 1603 aa7.66□□□□□ -1.18
VPS13D-209ENST00000487188 MAGI2Q86UL8 1455 aa7.66□□□□□ -1.18
VPS13D-209ENST00000487188 WDR63Q8IWG1 891 aa7.66□□□□□ -1.18
VPS13D-209ENST00000487188 KDM5DQ9BY66 1539 aa7.66□□□□□ -1.18
VPS13D-209ENST00000487188 ST18O60284 1047 aa7.65□□□□□ -1.18
VPS13D-209ENST00000487188 CASC1Q6TDU7 716 aa7.65□□□□□ -1.18
VPS13D-209ENST00000487188 KIF3AQ9Y496 699 aa7.65□□□□□ -1.18
VPS13D-209ENST00000487188 SCAPERQ9BY12 1400 aa7.65□□□□□ -1.18
VPS13D-209ENST00000487188 FAM135AQ9P2D6 1515 aa7.65□□□□□ -1.18
VPS13D-209ENST00000487188 GPATCH8Q9UKJ3 1502 aaKnown RBP7.65□□□□□ -1.18
VPS13D-209ENST00000487188 KIF20AO95235 890 aa7.65□□□□□ -1.18
VPS13D-209ENST00000487188 HDAC1Q13547 482 aaPredicted RBP7.65□□□□□ -1.18
VPS13D-209ENST00000487188 RABEP1Q15276 862 aa7.65□□□□□ -1.18
VPS13D-209ENST00000487188 PDCL2Q8N4E4 241 aa7.65□□□□□ -1.18
VPS13D-209ENST00000487188 TSPY26PQ9H489 355 aa7.65□□□□□ -1.18
VPS13D-209ENST00000487188 EIF2AK4Q9P2K8 1649 aaKnown RBP7.65□□□□□ -1.19
VPS13D-209ENST00000487188 CDC45O75419 566 aa7.65□□□□□ -1.19
VPS13D-209ENST00000487188 MBD3O95983 291 aa7.65□□□□□ -1.19
VPS13D-209ENST00000487188 CHD1LQ86WJ1 897 aa7.65□□□□□ -1.19
VPS13D-209ENST00000487188 NCOA3Q9Y6Q9 1424 aa7.65□□□□□ -1.19
VPS13D-209ENST00000487188 A2MP01023 1474 aa7.64□□□□□ -1.19
VPS13D-209ENST00000487188 PHF14O94880 888 aa7.64□□□□□ -1.19
VPS13D-209ENST00000487188 MYRIPQ8NFW9 859 aa7.64□□□□□ -1.19
VPS13D-209ENST00000487188 PRIMPOLQ96LW4 560 aa7.64□□□□□ -1.19
VPS13D-209ENST00000487188 CFAP44Q96MT7 982 aa7.64□□□□□ -1.19
VPS13D-209ENST00000487188 RTEL1-TNFRSF6BF6WH68 1400 aa7.64□□□□□ -1.19
VPS13D-209ENST00000487188 SPDYE4A6NLX3 237 aa7.64□□□□□ -1.19
VPS13D-209ENST00000487188 LRSAM1Q6UWE0 723 aa7.64□□□□□ -1.19
VPS13D-209ENST00000487188 TSC1Q92574 1164 aa7.64□□□□□ -1.19
VPS13D-209ENST00000487188 TSR2Q969E8 191 aaKnown RBP7.64□□□□□ -1.19
VPS13D-209ENST00000487188 CHMP4BQ9H444 224 aaKnown RBP7.64□□□□□ -1.19
VPS13D-209ENST00000487188 PRDM15P57071 1507 aaPredicted RBP7.64□□□□□ -1.19
VPS13D-209ENST00000487188 U2SURPO15042 1029 aaKnown RBP7.64□□□□□ -1.19
VPS13D-209ENST00000487188 DDIT3P35638 169 aa7.64□□□□□ -1.19
VPS13D-209ENST00000487188 EXOSC9Q06265 439 aaKnown RBP7.63□□□□□ -1.19
VPS13D-209ENST00000487188 ATF7IPQ6VMQ6 1270 aa7.63□□□□□ -1.19
VPS13D-209ENST00000487188 CGNQ9P2M7 1197 aaKnown RBP7.63□□□□□ -1.19
VPS13D-209ENST00000487188 CD2BP2O95400 341 aaKnown RBP7.63□□□□□ -1.19
VPS13D-209ENST00000487188 BMP2KLQ5H9B9 411 aa7.63□□□□□ -1.19
VPS13D-209ENST00000487188 TAF3Q5VWG9 929 aa7.63□□□□□ -1.19
VPS13D-209ENST00000487188 DIAPH3Q9NSV4 1193 aa7.63□□□□□ -1.19
VPS13D-209ENST00000487188 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS13D-209ENST00000487188 TRIM27P14373 513 aa7.63□□□□□ -1.19
VPS13D-209ENST00000487188 TBC1D9Q6ZT07 1266 aa7.63□□□□□ -1.19
VPS13D-209ENST00000487188 TMEM57Q8N5G2 664 aa7.63□□□□□ -1.19
VPS13D-209ENST00000487188 FAM177BA6PVY3 158 aa7.62□□□□□ -1.19
VPS13D-209ENST00000487188 PDLIM2Q96JY6 352 aa7.62□□□□□ -1.19
VPS13D-209ENST00000487188 LMBRD1Q9NUN5 540 aa7.62□□□□□ -1.19
VPS13D-209ENST00000487188 NOB1Q9ULX3 412 aaKnown RBP7.62□□□□□ -1.19
VPS13D-209ENST00000487188 FOXD4L6Q3SYB3 417 aaPredicted RBP7.62□□□□□ -1.19
VPS13D-209ENST00000487188 FOXD4L3Q6VB84 417 aaPredicted RBP7.62□□□□□ -1.19
VPS13D-209ENST00000487188 CWC22Q9HCG8 908 aaKnown RBP7.62□□□□□ -1.19
VPS13D-209ENST00000487188 NUCB1Q02818 461 aa7.62□□□□□ -1.19
VPS13D-209ENST00000487188 PLXNC1O60486 1568 aa7.62□□□□□ -1.19
VPS13D-209ENST00000487188 IGSF3O75054 1194 aa7.61□□□□□ -1.19
VPS13D-209ENST00000487188 ZSCAN20P17040 1043 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-209ENST00000487188 NAP1L2Q9ULW6 460 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-209ENST00000487188 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.61□□□□□ -1.19
VPS13D-209ENST00000487188 CT47B1P0C2W7 299 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-209ENST00000487188 SSH1Q8WYL5 1049 aa7.61□□□□□ -1.19
VPS13D-209ENST00000487188 ZNF830Q96NB3 372 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-209ENST00000487188 NPC1L1Q9UHC9 1359 aa7.61□□□□□ -1.19
VPS13D-209ENST00000487188 TTC37Q6PGP7 1564 aa7.61□□□□□ -1.19
VPS13D-209ENST00000487188 NOLC1Q14978 699 aaKnown RBP eCLIP7.61□□□□□ -1.19
VPS13D-209ENST00000487188 NOL8Q76FK4 1167 aaKnown RBP7.61□□□□□ -1.19
VPS13D-209ENST00000487188 BCL11BQ9C0K0 894 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-209ENST00000487188 C1orf115Q9H7X2 142 aa7.61□□□□□ -1.19
VPS13D-209ENST00000487188 SHANK2Q9UPX8 1470 aa7.6□□□□□ -1.19
VPS13D-209ENST00000487188 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.6□□□□□ -1.19
VPS13D-209ENST00000487188 CCDC141Q6ZP82 1450 aa7.6□□□□□ -1.19
VPS13D-209ENST00000487188 GCC1Q96CN9 775 aa7.6□□□□□ -1.19
VPS13D-209ENST00000487188 CROCC2H7BZ55 1655 aa7.6□□□□□ -1.19
VPS13D-209ENST00000487188 SYNMO15061 1565 aa7.6□□□□□ -1.19
VPS13D-209ENST00000487188 JARID2Q92833 1246 aaPredicted RBP7.6□□□□□ -1.19
VPS13D-209ENST00000487188 TMEM63CQ9P1W3 806 aa7.6□□□□□ -1.19
VPS13D-209ENST00000487188 USP25Q9UHP3 1055 aa7.6□□□□□ -1.19
VPS13D-209ENST00000487188 FRMPD1Q5SYB0 1578 aa7.6□□□□□ -1.19
VPS13D-209ENST00000487188 ARAP3Q8WWN8 1544 aa7.59□□□□□ -1.19
VPS13D-209ENST00000487188 CD109Q6YHK3 1445 aa7.59□□□□□ -1.19
VPS13D-209ENST00000487188 POLR3AO14802 1390 aaPredicted RBP7.59□□□□□ -1.19
VPS13D-209ENST00000487188 GOLGA6L6A8MZA4 724 aa7.59□□□□□ -1.19
VPS13D-209ENST00000487188 MTHFSP49914 203 aa7.59□□□□□ -1.19
VPS13D-209ENST00000487188 INTS3Q68E01 1043 aaKnown RBP7.59□□□□□ -1.19
VPS13D-209ENST00000487188 CCDC66A2RUB6 948 aa7.59□□□□□ -1.19
VPS13D-209ENST00000487188 APBB1O00213 710 aa7.59□□□□□ -1.19
VPS13D-209ENST00000487188 TTC12Q9H892 705 aaPredicted RBP7.59□□□□□ -1.19
VPS13D-209ENST00000487188 SCAF11Q99590 1463 aaKnown RBP7.59□□□□□ -1.19
VPS13D-209ENST00000487188 MAPK8IP2Q13387 824 aaPredicted RBP7.59□□□□□ -1.2
VPS13D-209ENST00000487188 GPT2Q8TD30 523 aa7.59□□□□□ -1.2
VPS13D-209ENST00000487188 PIBF1Q8WXW3 757 aa7.59□□□□□ -1.2
VPS13D-209ENST00000487188 BCL2L12Q9HB09 334 aa7.59□□□□□ -1.2
VPS13D-209ENST00000487188 VGLL3A8MV65 326 aa7.58□□□□□ -1.2
VPS13D-209ENST00000487188 CLEC17AQ6ZS10 378 aa7.58□□□□□ -1.2
VPS13D-209ENST00000487188 C17orf53Q8N3J3 647 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-209ENST00000487188 LAMC1P11047 1609 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms