RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 SPATA31A5Q5VU36 1347 aa19.1■□□□□ 0.65
HDAC6-227ENST00000485102 SPATA31A7Q8IWB4 1347 aa19.1■□□□□ 0.65
HDAC6-227ENST00000485102 PLEKHG5O94827 1062 aa19.1■□□□□ 0.65
HDAC6-227ENST00000485102 FAM98CQ17RN3 349 aaKnown RBP19.1■□□□□ 0.65
HDAC6-227ENST00000485102 NGDNQ8NEJ9 315 aaKnown RBP19.1■□□□□ 0.65
HDAC6-227ENST00000485102 BAG6P46379 1132 aa19.09■□□□□ 0.65
HDAC6-227ENST00000485102 CRYBG1Q9Y4K1 1723 aa19.08■□□□□ 0.65
HDAC6-227ENST00000485102 NUDT16Q96DE0 195 aaKnown RBP19.07■□□□□ 0.64
HDAC6-227ENST00000485102 ATP7BP35670 1465 aa19.06■□□□□ 0.64
HDAC6-227ENST00000485102 PRDM11Q9NQV5 511 aa19.05■□□□□ 0.64
HDAC6-227ENST00000485102 A0A0G2JS52 829 aa19.04■□□□□ 0.64
HDAC6-227ENST00000485102 DISP2A7MBM2 1401 aa19.04■□□□□ 0.64
HDAC6-227ENST00000485102 PAK3O75914 559 aaPredicted RBP19.04■□□□□ 0.64
HDAC6-227ENST00000485102 MYT1Q01538 1121 aa19.04■□□□□ 0.64
HDAC6-227ENST00000485102 ITSN1Q15811 1721 aa19.04■□□□□ 0.64
HDAC6-227ENST00000485102 ARHGEF28Q8N1W1 1705 aaKnown RBP19.04■□□□□ 0.64
HDAC6-227ENST00000485102 POLR3AO14802 1390 aaPredicted RBP19.04■□□□□ 0.64
HDAC6-227ENST00000485102 LRP5O75197 1615 aa19.03■□□□□ 0.64
HDAC6-227ENST00000485102 THSD7AQ9UPZ6 1657 aa19.03■□□□□ 0.64
HDAC6-227ENST00000485102 PLEKHG3A1L390 1219 aa19.02■□□□□ 0.64
HDAC6-227ENST00000485102 CCDC61Q9Y6R9 512 aa19.02■□□□□ 0.64
HDAC6-227ENST00000485102 SPATA31A1Q5TZJ5 1347 aa19.01■□□□□ 0.63
HDAC6-227ENST00000485102 CDK19Q9BWU1 502 aa19.01■□□□□ 0.63
HDAC6-227ENST00000485102 KIAA0232Q92628 1395 aa19.01■□□□□ 0.63
HDAC6-227ENST00000485102 RGPD1P0DJD0 1748 aa19■□□□□ 0.63
HDAC6-227ENST00000485102 NBPF8Q3BBV2 869 aa19■□□□□ 0.63
HDAC6-227ENST00000485102 EN1Q05925 392 aaPredicted RBP18.99■□□□□ 0.63
HDAC6-227ENST00000485102 KIAA1210Q9ULL0 1709 aa18.99■□□□□ 0.63
HDAC6-227ENST00000485102 ACEP12821 1306 aa18.99■□□□□ 0.63
HDAC6-227ENST00000485102 FAM196AQ6ZSG2 479 aa18.98■□□□□ 0.63
HDAC6-227ENST00000485102 BARGINQ6ZT62 677 aa18.97■□□□□ 0.63
HDAC6-227ENST00000485102 PHRF1Q9P1Y6 1649 aaKnown RBP18.96■□□□□ 0.63
HDAC6-227ENST00000485102 TOPAZ1Q8N9V7 1692 aa18.96■□□□□ 0.63
HDAC6-227ENST00000485102 FAM182BQ5T319 152 aa18.96■□□□□ 0.63
HDAC6-227ENST00000485102 CPDO75976 1380 aa18.95■□□□□ 0.62
HDAC6-227ENST00000485102 PSDA5PKW4 1024 aaPredicted RBP18.95■□□□□ 0.62
HDAC6-227ENST00000485102 CHRNA2Q15822 529 aa18.95■□□□□ 0.62
HDAC6-227ENST00000485102 ZC3H6P61129 1189 aaKnown RBP18.94■□□□□ 0.62
HDAC6-227ENST00000485102 CAMKK2Q96RR4 588 aa18.94■□□□□ 0.62
HDAC6-227ENST00000485102 USP19O94966 1318 aa18.94■□□□□ 0.62
HDAC6-227ENST00000485102 TNS1Q9HBL0 1735 aaKnown RBP18.94■□□□□ 0.62
HDAC6-227ENST00000485102 BRD4O60885 1362 aaPredicted RBP18.93■□□□□ 0.62
HDAC6-227ENST00000485102 PARD3Q8TEW0 1356 aa18.93■□□□□ 0.62
HDAC6-227ENST00000485102 STRN4Q9NRL3 753 aa18.93■□□□□ 0.62
HDAC6-227ENST00000485102 SSH2Q76I76 1423 aa18.92■□□□□ 0.62
HDAC6-227ENST00000485102 ABTB2Q8N961 1025 aa18.92■□□□□ 0.62
HDAC6-227ENST00000485102 EVA1CP58658 441 aa18.91■□□□□ 0.62
HDAC6-227ENST00000485102 NBPF1Q3BBV0 1214 aa18.91■□□□□ 0.62
HDAC6-227ENST00000485102 NUTM2GQ5VZR2 741 aa18.91■□□□□ 0.62
HDAC6-227ENST00000485102 THRAP3Q9Y2W1 955 aaKnown RBP18.91■□□□□ 0.62
HDAC6-227ENST00000485102 CAMTA1Q9Y6Y1 1673 aa18.91■□□□□ 0.62
HDAC6-227ENST00000485102 TRIM37O94972 964 aa18.9■□□□□ 0.62
HDAC6-227ENST00000485102 EZH2Q15910 746 aaKnown RBP18.9■□□□□ 0.62
HDAC6-227ENST00000485102 NLRP13Q86W25 1043 aa18.9■□□□□ 0.62
HDAC6-227ENST00000485102 NRKQ7Z2Y5 1582 aa18.89■□□□□ 0.62
HDAC6-227ENST00000485102 LMO7Q8WWI1 1683 aa18.89■□□□□ 0.61
HDAC6-227ENST00000485102 GCP02774 474 aa18.89■□□□□ 0.61
HDAC6-227ENST00000485102 R3HDM1Q15032 1099 aaKnown RBP18.89■□□□□ 0.61
HDAC6-227ENST00000485102 TCP11L2Q8N4U5 519 aa18.89■□□□□ 0.61
HDAC6-227ENST00000485102 C11orf95C9JLR9 678 aaPredicted RBP18.88■□□□□ 0.61
HDAC6-227ENST00000485102 PDE3BQ13370 1112 aa18.88■□□□□ 0.61
HDAC6-227ENST00000485102 APBA3O96018 575 aa18.87■□□□□ 0.61
HDAC6-227ENST00000485102 LARP1Q6PKG0 1096 aaKnown RBP18.87■□□□□ 0.61
HDAC6-227ENST00000485102 CENPJQ9HC77 1338 aaPredicted RBP18.87■□□□□ 0.61
HDAC6-227ENST00000485102 PPIP5K1Q6PFW1 1433 aa18.86■□□□□ 0.61
HDAC6-227ENST00000485102 USP35Q9P2H5 1018 aa18.86■□□□□ 0.61
HDAC6-227ENST00000485102 SRPK2P78362 688 aaKnown RBP18.85■□□□□ 0.61
HDAC6-227ENST00000485102 CABP2Q9NPB3 220 aa18.83■□□□□ 0.6
HDAC6-227ENST00000485102 COL5A2P05997 1499 aaPredicted RBP18.83■□□□□ 0.6
HDAC6-227ENST00000485102 AATKQ6ZMQ8 1374 aa18.82■□□□□ 0.6
HDAC6-227ENST00000485102 USP6P35125 1406 aa18.82■□□□□ 0.6
HDAC6-227ENST00000485102 PARP4Q9UKK3 1724 aaKnown RBP18.81■□□□□ 0.6
HDAC6-227ENST00000485102 CABP1Q9NZU7 370 aa18.81■□□□□ 0.6
HDAC6-227ENST00000485102 RREB1Q92766 1687 aa18.81■□□□□ 0.6
HDAC6-227ENST00000485102 CRB1P82279 1406 aa18.81■□□□□ 0.6
HDAC6-227ENST00000485102 NBPF14Q5TI25 921 aa18.8■□□□□ 0.6
HDAC6-227ENST00000485102 NLRP6P59044 892 aa18.79■□□□□ 0.6
HDAC6-227ENST00000485102 SLIT3O75094 1523 aa18.79■□□□□ 0.6
HDAC6-227ENST00000485102 ZNF692Q9BU19 519 aaPredicted RBP18.77■□□□□ 0.6
HDAC6-227ENST00000485102 EVC2Q86UK5 1308 aa18.76■□□□□ 0.59
HDAC6-227ENST00000485102 QRICH2Q9H0J4 1663 aa18.76■□□□□ 0.59
HDAC6-227ENST00000485102 PLSCR1O15162 318 aa18.76■□□□□ 0.59
HDAC6-227ENST00000485102 L3MBTL2Q969R5 705 aa18.76■□□□□ 0.59
HDAC6-227ENST00000485102 NUP188Q5SRE5 1749 aa18.76■□□□□ 0.59
HDAC6-227ENST00000485102 OVOS2A0A0G2JMS6 1433 aa18.75■□□□□ 0.59
HDAC6-227ENST00000485102 OVOS2A0A0J9YW53 1432 aa18.75■□□□□ 0.59
HDAC6-227ENST00000485102 OVOS2Q6IE36 1432 aa18.75■□□□□ 0.59
HDAC6-227ENST00000485102 PEAK1Q9H792 1746 aa18.75■□□□□ 0.59
HDAC6-227ENST00000485102 COL18A1P39060 1754 aa18.75■□□□□ 0.59
HDAC6-227ENST00000485102 BCL9O00512 1426 aa18.74■□□□□ 0.59
HDAC6-227ENST00000485102 CDCA7Q9BWT1 371 aaPredicted RBP18.74■□□□□ 0.59
HDAC6-227ENST00000485102 DDB1Q16531 1140 aa18.73■□□□□ 0.59
HDAC6-227ENST00000485102 ARHGEF25Q86VW2 580 aa18.73■□□□□ 0.59
HDAC6-227ENST00000485102 RGPD3A6NKT7 1758 aaPredicted RBP18.73■□□□□ 0.59
HDAC6-227ENST00000485102 RGPD4Q7Z3J3 1758 aa18.73■□□□□ 0.59
HDAC6-227ENST00000485102 WDR17Q8IZU2 1322 aa18.73■□□□□ 0.59
HDAC6-227ENST00000485102 KCNH5Q8NCM2 988 aa18.72■□□□□ 0.59
HDAC6-227ENST00000485102 AXIN2Q9Y2T1 843 aa18.72■□□□□ 0.59
HDAC6-227ENST00000485102 PIK3C2AO00443 1686 aa18.72■□□□□ 0.59
HDAC6-227ENST00000485102 SBF2Q86WG5 1849 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms