RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 NME9Q86XW9 330 aa18.67■□□□□ 0.58
CLK3-204ENST00000483723 TTC21BQ7Z4L5 1316 aa18.67■□□□□ 0.58
CLK3-204ENST00000483723 SENP3-EIF4A1A0A087X0R7 540 aa18.66■□□□□ 0.58
CLK3-204ENST00000483723 NUTM2FA1L443 756 aa18.66■□□□□ 0.58
CLK3-204ENST00000483723 AATKQ6ZMQ8 1374 aa18.66■□□□□ 0.58
CLK3-204ENST00000483723 ADGRL3Q9HAR2 1447 aa18.66■□□□□ 0.58
CLK3-204ENST00000483723 NGEFQ8N5V2 710 aa18.66■□□□□ 0.58
CLK3-204ENST00000483723 SUPT16HQ9Y5B9 1047 aaKnown RBP18.66■□□□□ 0.58
CLK3-204ENST00000483723 ZNF521Q96K83 1311 aa18.65■□□□□ 0.58
CLK3-204ENST00000483723 MAP2P11137 1827 aaKnown RBP18.65■□□□□ 0.58
CLK3-204ENST00000483723 POLKQ9UBT6 870 aa18.63■□□□□ 0.57
CLK3-204ENST00000483723 ZRANB1Q9UGI0 708 aa18.63■□□□□ 0.57
CLK3-204ENST00000483723 COG3Q96JB2 828 aa18.63■□□□□ 0.57
CLK3-204ENST00000483723 TTC21AQ8NDW8 1320 aa18.62■□□□□ 0.57
CLK3-204ENST00000483723 SALL2Q9Y467 1007 aaPredicted RBP18.62■□□□□ 0.57
CLK3-204ENST00000483723 CCDC146Q8IYE0 955 aa18.61■□□□□ 0.57
CLK3-204ENST00000483723 APAF1O14727 1248 aa18.6■□□□□ 0.57
CLK3-204ENST00000483723 NCBP3Q53F19 620 aaKnown RBP18.6■□□□□ 0.57
CLK3-204ENST00000483723 PMFBP1Q8TBY8 1022 aa18.6■□□□□ 0.57
CLK3-204ENST00000483723 RUNDC1Q96C34 613 aa18.6■□□□□ 0.57
CLK3-204ENST00000483723 OVOS2A0A0J9YW53 1432 aa18.6■□□□□ 0.57
CLK3-204ENST00000483723 OVOS2Q6IE36 1432 aa18.6■□□□□ 0.57
CLK3-204ENST00000483723 NEFLP07196 543 aa18.6■□□□□ 0.57
CLK3-204ENST00000483723 FKBP8Q14318 412 aa18.6■□□□□ 0.57
CLK3-204ENST00000483723 RNF123Q5XPI4 1314 aa18.59■□□□□ 0.57
CLK3-204ENST00000483723 NGDNQ8NEJ9 315 aaKnown RBP18.59■□□□□ 0.57
CLK3-204ENST00000483723 USP31Q70CQ4 1352 aa18.59■□□□□ 0.57
CLK3-204ENST00000483723 CDCA7LQ96GN5 454 aa18.58■□□□□ 0.57
CLK3-204ENST00000483723 DIAPH1O60610 1272 aaKnown RBP18.57■□□□□ 0.56
CLK3-204ENST00000483723 FBLN1P23142 703 aa18.57■□□□□ 0.56
CLK3-204ENST00000483723 PROSER2Q86WR7 435 aaPredicted RBP18.57■□□□□ 0.56
CLK3-204ENST00000483723 RBM33Q96EV2 1170 aaKnown RBP18.57■□□□□ 0.56
CLK3-204ENST00000483723 IQSEC2Q5JU85 1478 aa18.57■□□□□ 0.56
CLK3-204ENST00000483723 CDK12Q9NYV4 1490 aaPredicted RBP18.57■□□□□ 0.56
CLK3-204ENST00000483723 NCOA3Q9Y6Q9 1424 aa18.56■□□□□ 0.56
CLK3-204ENST00000483723 HSPA2P54652 639 aa18.56■□□□□ 0.56
CLK3-204ENST00000483723 STRCP1A6NGW2 1772 aa18.56■□□□□ 0.56
CLK3-204ENST00000483723 U2AF1L5P0DN76 240 aaPredicted RBP18.55■□□□□ 0.56
CLK3-204ENST00000483723 U2AF1Q01081 240 aaKnown RBP eCLIP18.55■□□□□ 0.56
CLK3-204ENST00000483723 PHF23Q9BUL5 403 aaPredicted RBP18.55■□□□□ 0.56
CLK3-204ENST00000483723 PHF8Q9UPP1 1060 aa18.55■□□□□ 0.56
CLK3-204ENST00000483723 USP54Q70EL1 1684 aa18.55■□□□□ 0.56
CLK3-204ENST00000483723 STRCQ7RTU9 1775 aa18.55■□□□□ 0.56
CLK3-204ENST00000483723 TRMT2AQ8IZ69 625 aaKnown RBP18.54■□□□□ 0.56
CLK3-204ENST00000483723 GOLGA2Q08379 1002 aa18.54■□□□□ 0.56
CLK3-204ENST00000483723 ERICH6BQ5W0A0 696 aa18.54■□□□□ 0.56
CLK3-204ENST00000483723 PLEKHF1Q96S99 279 aa18.54■□□□□ 0.56
CLK3-204ENST00000483723 EMILIN1Q9Y6C2 1016 aa18.54■□□□□ 0.56
CLK3-204ENST00000483723 TCP11L2Q8N4U5 519 aa18.53■□□□□ 0.56
CLK3-204ENST00000483723 PIK3C2AO00443 1686 aa18.53■□□□□ 0.56
CLK3-204ENST00000483723 SLFN5Q08AF3 891 aa18.52■□□□□ 0.56
CLK3-204ENST00000483723 CCDC27Q2M243 656 aa18.52■□□□□ 0.56
CLK3-204ENST00000483723 C19orf44Q9H6X5 657 aa18.52■□□□□ 0.56
CLK3-204ENST00000483723 IL13P35225 146 aa18.52■□□□□ 0.55
CLK3-204ENST00000483723 LRRC7Q96NW7 1537 aa18.51■□□□□ 0.55
CLK3-204ENST00000483723 DUSP27Q5VZP5 1158 aa18.51■□□□□ 0.55
CLK3-204ENST00000483723 MARF1Q9Y4F3 1742 aaKnown RBP18.5■□□□□ 0.55
CLK3-204ENST00000483723 U2SURPO15042 1029 aaKnown RBP18.5■□□□□ 0.55
CLK3-204ENST00000483723 FCHSD2O94868 740 aa18.5■□□□□ 0.55
CLK3-204ENST00000483723 WWC1Q8IX03 1113 aa18.5■□□□□ 0.55
CLK3-204ENST00000483723 PNNQ9H307 717 aaKnown RBP18.5■□□□□ 0.55
CLK3-204ENST00000483723 RRS1Q15050 365 aaKnown RBP18.49■□□□□ 0.55
CLK3-204ENST00000483723 C14orf37Q86TY3 774 aa18.49■□□□□ 0.55
CLK3-204ENST00000483723 PPM1GO15355 546 aaPredicted RBP18.49■□□□□ 0.55
CLK3-204ENST00000483723 RCAN3Q9UKA8 241 aa18.48■□□□□ 0.55
CLK3-204ENST00000483723 DCCP43146 1447 aa18.47■□□□□ 0.55
CLK3-204ENST00000483723 TMEM94Q12767 1356 aa18.47■□□□□ 0.55
CLK3-204ENST00000483723 ESCO1Q5FWF5 840 aa18.47■□□□□ 0.55
CLK3-204ENST00000483723 WDR63Q8IWG1 891 aa18.47■□□□□ 0.55
CLK3-204ENST00000483723 PEAK1Q9H792 1746 aa18.47■□□□□ 0.55
CLK3-204ENST00000483723 C1orf167Q5SNV9 1468 aa18.46■□□□□ 0.55
CLK3-204ENST00000483723 E9PSI1 815 aa18.46■□□□□ 0.55
CLK3-204ENST00000483723 ILDR1Q86SU0 546 aaPredicted RBP18.46■□□□□ 0.55
CLK3-204ENST00000483723 RSPH6AQ9H0K4 717 aa18.46■□□□□ 0.55
CLK3-204ENST00000483723 DMRT2Q9Y5R5 561 aa18.46■□□□□ 0.55
CLK3-204ENST00000483723 SPINK5Q9NQ38 1064 aaPredicted RBP18.46■□□□□ 0.55
CLK3-204ENST00000483723 NLRP6P59044 892 aa18.45■□□□□ 0.54
CLK3-204ENST00000483723 KIF1AQ12756 1690 aa18.44■□□□□ 0.54
CLK3-204ENST00000483723 TMPOP42166 694 aaKnown RBP18.44■□□□□ 0.54
CLK3-204ENST00000483723 ORAI2Q96SN7 254 aa18.44■□□□□ 0.54
CLK3-204ENST00000483723 RRP7AQ9Y3A4 280 aaKnown RBP18.43■□□□□ 0.54
CLK3-204ENST00000483723 KIF24Q5T7B8 1368 aa18.43■□□□□ 0.54
CLK3-204ENST00000483723 MAP3K19Q56UN5 1328 aa18.43■□□□□ 0.54
CLK3-204ENST00000483723 PSME1Q06323 249 aa18.43■□□□□ 0.54
CLK3-204ENST00000483723 ABTB2Q8N961 1025 aa18.43■□□□□ 0.54
CLK3-204ENST00000483723 MST1RQ04912 1400 aa18.42■□□□□ 0.54
CLK3-204ENST00000483723 XIRP1Q702N8 1843 aaKnown RBP18.42■□□□□ 0.54
CLK3-204ENST00000483723 IRX6P78412 446 aaPredicted RBP18.42■□□□□ 0.54
CLK3-204ENST00000483723 SBNO1A3KN83 1393 aa18.42■□□□□ 0.54
CLK3-204ENST00000483723 MAPK8IP3Q9UPT6 1336 aa18.41■□□□□ 0.54
CLK3-204ENST00000483723 EIF4A2Q14240 407 aaKnown RBP18.41■□□□□ 0.54
CLK3-204ENST00000483723 NEUROD2Q15784 382 aa18.41■□□□□ 0.54
CLK3-204ENST00000483723 RGPD1P0DJD0 1748 aa18.41■□□□□ 0.54
CLK3-204ENST00000483723 RRP1P56182 461 aaKnown RBP18.4■□□□□ 0.54
CLK3-204ENST00000483723 TRIM35Q9UPQ4 493 aa18.4■□□□□ 0.54
CLK3-204ENST00000483723 TRPM3Q9HCF6 1732 aaPredicted RBP18.4■□□□□ 0.54
CLK3-204ENST00000483723 ATF3P18847 181 aa18.4■□□□□ 0.54
CLK3-204ENST00000483723 PRKAR2BP31323 418 aa18.4■□□□□ 0.54
CLK3-204ENST00000483723 FLT4P35916 1363 aa18.4■□□□□ 0.54
CLK3-204ENST00000483723 PAK3O75914 559 aaPredicted RBP18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 145.9 ms