RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 NGEFQ8N5V2 710 aa26.09■■□□□ 1.77
SDF4-206ENST00000478938 ABCC10Q5T3U5 1492 aa26.08■■□□□ 1.77
SDF4-206ENST00000478938 LAMC1P11047 1609 aa26.08■■□□□ 1.77
SDF4-206ENST00000478938 NUCB2P80303 420 aa26.08■■□□□ 1.77
SDF4-206ENST00000478938 IQGAP2Q13576 1575 aa26.07■■□□□ 1.76
SDF4-206ENST00000478938 CROCC2H7BZ55 1655 aa26.07■■□□□ 1.76
SDF4-206ENST00000478938 A2MP01023 1474 aa26.07■■□□□ 1.76
SDF4-206ENST00000478938 PBRM1Q86U86 1689 aa26.07■■□□□ 1.76
SDF4-206ENST00000478938 TTC12Q9H892 705 aaPredicted RBP26.06■■□□□ 1.76
SDF4-206ENST00000478938 GRIN2AQ12879 1464 aa26.06■■□□□ 1.76
SDF4-206ENST00000478938 RSPH4AQ5TD94 716 aa26.05■■□□□ 1.76
SDF4-206ENST00000478938 ZKSCAN2Q63HK3 967 aa26.05■■□□□ 1.76
SDF4-206ENST00000478938 FKBP5Q13451 457 aaPredicted RBP26.04■■□□□ 1.76
SDF4-206ENST00000478938 ANKRD7Q92527 254 aa26.04■■□□□ 1.76
SDF4-206ENST00000478938 ITPRIPQ8IWB1 547 aa26.03■■□□□ 1.76
SDF4-206ENST00000478938 TBC1D9Q6ZT07 1266 aa26.03■■□□□ 1.76
SDF4-206ENST00000478938 CHMP4AQ9BY43 222 aa26.02■■□□□ 1.76
SDF4-206ENST00000478938 NUCB1Q02818 461 aa26.02■■□□□ 1.76
SDF4-206ENST00000478938 RIOK3O14730 519 aaKnown RBP26.01■■□□□ 1.75
SDF4-206ENST00000478938 BMP2KLQ5H9B9 411 aa26.01■■□□□ 1.75
SDF4-206ENST00000478938 TSPY26PQ9H489 355 aa26■■□□□ 1.75
SDF4-206ENST00000478938 SPTLC3Q9NUV7 552 aa25.99■■□□□ 1.75
SDF4-206ENST00000478938 OGFRQ9NZT2 677 aa25.99■■□□□ 1.75
SDF4-206ENST00000478938 FOXD4L5Q5VV16 416 aaPredicted RBP25.98■■□□□ 1.75
SDF4-206ENST00000478938 FOXD4L4Q8WXT5 416 aaPredicted RBP25.98■■□□□ 1.75
SDF4-206ENST00000478938 ZDHHC9Q9Y397 364 aa25.98■■□□□ 1.75
SDF4-206ENST00000478938 ZGPATQ8N5A5 531 aaKnown RBP25.98■■□□□ 1.75
SDF4-206ENST00000478938 FEZ1Q99689 392 aa25.98■■□□□ 1.75
SDF4-206ENST00000478938 TRIM27P14373 513 aa25.97■■□□□ 1.75
SDF4-206ENST00000478938 CHD1LQ86WJ1 897 aa25.97■■□□□ 1.75
SDF4-206ENST00000478938 SYNMO15061 1565 aa25.97■■□□□ 1.75
SDF4-206ENST00000478938 ADCY10Q96PN6 1610 aa25.97■■□□□ 1.75
SDF4-206ENST00000478938 SLFN14P0C7P3 912 aa25.97■■□□□ 1.75
SDF4-206ENST00000478938 TCP11L2Q8N4U5 519 aa25.96■■□□□ 1.75
SDF4-206ENST00000478938 PTPRGP23470 1445 aa25.96■■□□□ 1.75
SDF4-206ENST00000478938 GABPB1Q06547 395 aaPredicted RBP25.96■■□□□ 1.75
SDF4-206ENST00000478938 USP25Q9UHP3 1055 aa25.95■■□□□ 1.74
SDF4-206ENST00000478938 DDX19BQ9UMR2 479 aa25.95■■□□□ 1.74
SDF4-206ENST00000478938 PRG4Q92954 1404 aaPredicted RBP25.94■■□□□ 1.74
SDF4-206ENST00000478938 GPATCH8Q9UKJ3 1502 aaKnown RBP25.93■■□□□ 1.74
SDF4-206ENST00000478938 NPC1L1Q9UHC9 1359 aa25.93■■□□□ 1.74
SDF4-206ENST00000478938 CFAP74Q9C0B2 1584 aa25.93■■□□□ 1.74
SDF4-206ENST00000478938 CDCA8Q53HL2 280 aa25.93■■□□□ 1.74
SDF4-206ENST00000478938 SMC4Q9NTJ3 1288 aa25.93■■□□□ 1.74
SDF4-206ENST00000478938 CERS3Q8IU89 383 aa25.92■■□□□ 1.74
SDF4-206ENST00000478938 MAGI1Q96QZ7 1491 aaPredicted RBP25.91■■□□□ 1.74
SDF4-206ENST00000478938 C9orf84Q5VXU9 1444 aa25.91■■□□□ 1.74
SDF4-206ENST00000478938 WDR63Q8IWG1 891 aa25.91■■□□□ 1.74
SDF4-206ENST00000478938 DNAJC2Q99543 621 aaKnown RBP25.91■■□□□ 1.74
SDF4-206ENST00000478938 DIAPH3Q9NSV4 1193 aa25.91■■□□□ 1.74
SDF4-206ENST00000478938 ADAMTS12P58397 1594 aa25.9■■□□□ 1.74
SDF4-206ENST00000478938 CTIFO43310 598 aaKnown RBP25.9■■□□□ 1.74
SDF4-206ENST00000478938 RABEP1Q15276 862 aa25.9■■□□□ 1.74
SDF4-206ENST00000478938 EIF2AK4Q9P2K8 1649 aaKnown RBP25.9■■□□□ 1.74
SDF4-206ENST00000478938 RUNDC1Q96C34 613 aa25.9■■□□□ 1.74
SDF4-206ENST00000478938 PHF23Q9BUL5 403 aaPredicted RBP25.9■■□□□ 1.74
SDF4-206ENST00000478938 NUP153P49790 1475 aaKnown RBP25.89■■□□□ 1.74
SDF4-206ENST00000478938 CHAF1AQ13111 956 aaPredicted RBP25.89■■□□□ 1.74
SDF4-206ENST00000478938 MBD3O95983 291 aa25.89■■□□□ 1.73
SDF4-206ENST00000478938 NCBP1Q09161 790 aaKnown RBP25.89■■□□□ 1.73
SDF4-206ENST00000478938 TMEM57Q8N5G2 664 aa25.89■■□□□ 1.73
SDF4-206ENST00000478938 TIGD1Q96MW7 591 aa25.89■■□□□ 1.73
SDF4-206ENST00000478938 CTNNA3Q9UI47 895 aa25.89■■□□□ 1.73
SDF4-206ENST00000478938 MYO5CQ9NQX4 1742 aa25.89■■□□□ 1.73
SDF4-206ENST00000478938 ADCY5O95622 1261 aa25.88■■□□□ 1.73
SDF4-206ENST00000478938 SLC20A2Q08357 652 aa25.88■■□□□ 1.73
SDF4-206ENST00000478938 ZFP91Q96JP5 570 aaPredicted RBP25.88■■□□□ 1.73
SDF4-206ENST00000478938 ZBTB40Q9NUA8 1239 aa25.88■■□□□ 1.73
SDF4-206ENST00000478938 CCDC66A2RUB6 948 aa25.88■■□□□ 1.73
SDF4-206ENST00000478938 CAPN2P17655 700 aa25.88■■□□□ 1.73
SDF4-206ENST00000478938 CCDC141Q6ZP82 1450 aa25.87■■□□□ 1.73
SDF4-206ENST00000478938 ANKRD45Q5TZF3 282 aa25.87■■□□□ 1.73
SDF4-206ENST00000478938 MYOM1P52179 1685 aa25.87■■□□□ 1.73
SDF4-206ENST00000478938 IQSEC2Q5JU85 1478 aa25.87■■□□□ 1.73
SDF4-206ENST00000478938 TSR2Q969E8 191 aaKnown RBP25.87■■□□□ 1.73
SDF4-206ENST00000478938 CWC22Q9HCG8 908 aaKnown RBP25.87■■□□□ 1.73
SDF4-206ENST00000478938 PLA2R1Q13018 1463 aa25.86■■□□□ 1.73
SDF4-206ENST00000478938 PYCARDQ9ULZ3 195 aa25.85■■□□□ 1.73
SDF4-206ENST00000478938 IRX3P78415 501 aaPredicted RBP25.85■■□□□ 1.73
SDF4-206ENST00000478938 ATF7IPQ6VMQ6 1270 aa25.85■■□□□ 1.73
SDF4-206ENST00000478938 ERICH4A6NGS2 130 aa25.84■■□□□ 1.73
SDF4-206ENST00000478938 TERF2Q15554 542 aa25.84■■□□□ 1.73
SDF4-206ENST00000478938 SSH1Q8WYL5 1049 aa25.83■■□□□ 1.73
SDF4-206ENST00000478938 DDX41Q9UJV9 622 aaKnown RBP25.83■■□□□ 1.72
SDF4-206ENST00000478938 NOB1Q9ULX3 412 aaKnown RBP25.82■■□□□ 1.72
SDF4-206ENST00000478938 RNF17Q9BXT8 1623 aaKnown RBP25.82■■□□□ 1.72
SDF4-206ENST00000478938 NUP160Q12769 1436 aa25.82■■□□□ 1.72
SDF4-206ENST00000478938 POLR3AO14802 1390 aaPredicted RBP25.82■■□□□ 1.72
SDF4-206ENST00000478938 TRIM6-TRIM34B2RNG4 842 aa25.82■■□□□ 1.72
SDF4-206ENST00000478938 CDC45O75419 566 aa25.82■■□□□ 1.72
SDF4-206ENST00000478938 AEBP1Q8IUX7 1158 aa25.82■■□□□ 1.72
SDF4-206ENST00000478938 KIAA1524Q8TCG1 905 aa25.82■■□□□ 1.72
SDF4-206ENST00000478938 TRIM34Q9BYJ4 488 aa25.82■■□□□ 1.72
SDF4-206ENST00000478938 DISP1Q96F81 1524 aa25.82■■□□□ 1.72
SDF4-206ENST00000478938 TROQ12816 1431 aaPredicted RBP25.82■■□□□ 1.72
SDF4-206ENST00000478938 TRERF1Q96PN7 1200 aa25.8■■□□□ 1.72
SDF4-206ENST00000478938 KCNF1Q9H3M0 494 aa25.8■■□□□ 1.72
SDF4-206ENST00000478938 KANK1Q14678 1352 aa25.8■■□□□ 1.72
SDF4-206ENST00000478938 NAA30Q147X3 362 aaPredicted RBP25.8■■□□□ 1.72
SDF4-206ENST00000478938 CARD14Q9BXL6 1004 aa25.8■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms