RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 RNF19BQ6ZMZ0 732 aa9.05□□□□□ -0.96
UPF3B-203ENST00000478840 THAP11Q96EK4 314 aa9.05□□□□□ -0.96
UPF3B-203ENST00000478840 BLOC1S3Q6QNY0 202 aa9.04□□□□□ -0.96
UPF3B-203ENST00000478840 ZBBXA8MT70 800 aa9.03□□□□□ -0.96
UPF3B-203ENST00000478840 ATP9BO43861 1147 aa9.03□□□□□ -0.96
UPF3B-203ENST00000478840 FBXO45P0C2W1 286 aa9.03□□□□□ -0.96
UPF3B-203ENST00000478840 TMCO4Q5TGY1 634 aa9.03□□□□□ -0.96
UPF3B-203ENST00000478840 TBC1D9Q6ZT07 1266 aa9.03□□□□□ -0.96
UPF3B-203ENST00000478840 NFATC2IPQ8NCF5 419 aa9.03□□□□□ -0.96
UPF3B-203ENST00000478840 STAC3Q96MF2 364 aa9.03□□□□□ -0.96
UPF3B-203ENST00000478840 GZF1Q9H116 711 aaPredicted RBP9.03□□□□□ -0.96
UPF3B-203ENST00000478840 FKBPLQ9UIM3 349 aa9.03□□□□□ -0.96
UPF3B-203ENST00000478840 SOWAHBA6NEL2 793 aa9.02□□□□□ -0.97
UPF3B-203ENST00000478840 PTPRNQ16849 979 aa9.02□□□□□ -0.97
UPF3B-203ENST00000478840 KCTD12Q96CX2 325 aaKnown RBP9.02□□□□□ -0.97
UPF3B-203ENST00000478840 TMEM88BA6NKF7 163 aa9.01□□□□□ -0.97
UPF3B-203ENST00000478840 JUNDP17535 347 aa9.01□□□□□ -0.97
UPF3B-203ENST00000478840 SCUBE3Q8IX30 993 aa9.01□□□□□ -0.97
UPF3B-203ENST00000478840 NR1I2O75469 434 aa9□□□□□ -0.97
UPF3B-203ENST00000478840 FMNL1O95466 1100 aaPredicted RBP9□□□□□ -0.97
UPF3B-203ENST00000478840 APLP1P51693 650 aa9□□□□□ -0.97
UPF3B-203ENST00000478840 ELOAQ14241 798 aaKnown RBP9□□□□□ -0.97
UPF3B-203ENST00000478840 RGS22Q8NE09 1264 aa9□□□□□ -0.97
UPF3B-203ENST00000478840 ANKK1Q8NFD2 765 aa9□□□□□ -0.97
UPF3B-203ENST00000478840 PPP4CP60510 307 aa8.99□□□□□ -0.97
UPF3B-203ENST00000478840 KANK4Q5T7N3 995 aaPredicted RBP8.99□□□□□ -0.97
UPF3B-203ENST00000478840 TSR3Q9UJK0 312 aaKnown RBP8.99□□□□□ -0.97
UPF3B-203ENST00000478840 GPSM3Q9Y4H4 160 aa8.99□□□□□ -0.97
UPF3B-203ENST00000478840 MSS51Q4VC12 460 aa8.98□□□□□ -0.97
UPF3B-203ENST00000478840 HPS5Q9UPZ3 1129 aa8.98□□□□□ -0.97
UPF3B-203ENST00000478840 MFAP1P55081 439 aaKnown RBP8.97□□□□□ -0.97
UPF3B-203ENST00000478840 PLEKHM2Q8IWE5 1019 aa8.97□□□□□ -0.97
UPF3B-203ENST00000478840 VRTNQ9H8Y1 702 aa8.97□□□□□ -0.97
UPF3B-203ENST00000478840 MAP10Q9P2G4 905 aa8.97□□□□□ -0.97
UPF3B-203ENST00000478840 PCDHB3Q9Y5E6 796 aa8.97□□□□□ -0.97
UPF3B-203ENST00000478840 ZNF592Q92610 1267 aa8.96□□□□□ -0.98
UPF3B-203ENST00000478840 GPKOWQ92917 476 aaPredicted RBP eCLIP8.96□□□□□ -0.984e-6■□□□□ 8.7
UPF3B-203ENST00000478840 GOLGA8CPA6NN73 597 aa8.95□□□□□ -0.98
UPF3B-203ENST00000478840 DXOO77932 396 aaKnown RBP8.95□□□□□ -0.98
UPF3B-203ENST00000478840 MMP16P51512 607 aa8.95□□□□□ -0.98
UPF3B-203ENST00000478840 MCCD1P59942 119 aaPredicted RBP8.95□□□□□ -0.98
UPF3B-203ENST00000478840 ARMC2Q8NEN0 867 aa8.95□□□□□ -0.98
UPF3B-203ENST00000478840 EVA1BQ9NVM1 165 aa8.95□□□□□ -0.98
UPF3B-203ENST00000478840 CARNS1A5YM72 827 aa8.94□□□□□ -0.98
UPF3B-203ENST00000478840 PIK3CDO00329 1044 aa8.94□□□□□ -0.98
UPF3B-203ENST00000478840 BCAMP50895 628 aa8.94□□□□□ -0.98
UPF3B-203ENST00000478840 PTPN5P54829 565 aa8.94□□□□□ -0.98
UPF3B-203ENST00000478840 CDCA8Q53HL2 280 aa8.94□□□□□ -0.98
UPF3B-203ENST00000478840 PDXDC2PQ6P474 469 aa8.94□□□□□ -0.98
UPF3B-203ENST00000478840 WNT2BQ93097 391 aa8.94□□□□□ -0.98
UPF3B-203ENST00000478840 USP17L3A6NCW0 530 aa8.93□□□□□ -0.98
UPF3B-203ENST00000478840 USP17L4A6NCW7 530 aa8.93□□□□□ -0.98
UPF3B-203ENST00000478840 CCNYL3P0C7X3 344 aa8.93□□□□□ -0.98
UPF3B-203ENST00000478840 USP17L2Q6R6M4 530 aa8.93□□□□□ -0.98
UPF3B-203ENST00000478840 USP17L1Q7RTZ2 530 aa8.93□□□□□ -0.98
UPF3B-203ENST00000478840 USP17L5A8MUK1 530 aa8.92□□□□□ -0.98
UPF3B-203ENST00000478840 PTK2Q05397 1052 aa8.92□□□□□ -0.98
UPF3B-203ENST00000478840 KCNH2Q12809 1159 aa8.92□□□□□ -0.98
UPF3B-203ENST00000478840 B4GALNT3Q6L9W6 998 aa8.92□□□□□ -0.98
UPF3B-203ENST00000478840 FAM160A2Q8N612 972 aaPredicted RBP8.92□□□□□ -0.98
UPF3B-203ENST00000478840 ZMIZ1Q9ULJ6 1067 aa8.92□□□□□ -0.98
UPF3B-203ENST00000478840 GNEQ9Y223 722 aaKnown RBP8.92□□□□□ -0.98
UPF3B-203ENST00000478840 FAM196BA6NMK8 535 aa8.91□□□□□ -0.98
UPF3B-203ENST00000478840 LZTS3O60299 673 aaPredicted RBP8.91□□□□□ -0.98
UPF3B-203ENST00000478840 PHTF2Q8N3S3 785 aa8.91□□□□□ -0.98
UPF3B-203ENST00000478840 FAM174AQ8TBP5 190 aa8.91□□□□□ -0.98
UPF3B-203ENST00000478840 OCSTAMPQ9BR26 566 aa8.91□□□□□ -0.98
UPF3B-203ENST00000478840 CEP126Q9P2H0 1117 aa8.91□□□□□ -0.98
UPF3B-203ENST00000478840 CHIC2Q9UKJ5 165 aa8.91□□□□□ -0.98
UPF3B-203ENST00000478840 MTMR7Q9Y216 660 aa8.91□□□□□ -0.98
UPF3B-203ENST00000478840 SKIP12755 728 aa8.9□□□□□ -0.98
UPF3B-203ENST00000478840 CTHP32929 405 aa8.9□□□□□ -0.98
UPF3B-203ENST00000478840 NBPF14Q5TI25 921 aa8.9□□□□□ -0.98
UPF3B-203ENST00000478840 THSD4Q6ZMP0 1018 aa8.9□□□□□ -0.98
UPF3B-203ENST00000478840 SPSB2Q99619 263 aa8.9□□□□□ -0.98
UPF3B-203ENST00000478840 NUDT12Q9BQG2 462 aa8.9□□□□□ -0.98
UPF3B-203ENST00000478840 IVNS1ABPQ9Y6Y0 642 aa8.89□□□□□ -0.99
UPF3B-203ENST00000478840 TMEM164Q5U3C3 297 aa8.88□□□□□ -0.99
UPF3B-203ENST00000478840 SND1Q7KZF4 910 aaKnown RBP eCLIP8.88□□□□□ -0.99
UPF3B-203ENST00000478840 WBP1LQ9NX94 342 aa8.88□□□□□ -0.99
UPF3B-203ENST00000478840 NOVA2Q9UNW9 492 aaKnown RBP8.88□□□□□ -0.99
UPF3B-203ENST00000478840 STK32AQ8WU08 396 aa8.87□□□□□ -0.99
UPF3B-203ENST00000478840 USP17L15C9J2P7 530 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 USP17L10C9JJH3 530 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 USP17L13C9JLJ4 530 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 USP17L12C9JPN9 530 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 USP17L11C9JVI0 530 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 USP17L21D6R901 530 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 USP17L18D6R9N7 530 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 USP17L22D6RA61 530 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 USP17L17D6RBQ6 530 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 USP17L19D6RCP7 530 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 USP17L20D6RJB6 530 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 USP17L24Q0WX57 530 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 SLFNL1Q499Z3 407 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 HCSTQ9UBK5 93 aa8.86□□□□□ -0.99
UPF3B-203ENST00000478840 MKRN1Q9UHC7 482 aaKnown RBP8.86□□□□□ -0.99
UPF3B-203ENST00000478840 ATP5J2-PTCD1G3V325 749 aa8.85□□□□□ -0.99
UPF3B-203ENST00000478840 PTK7Q13308 1070 aa8.85□□□□□ -0.99
UPF3B-203ENST00000478840 MAP7D1Q3KQU3 841 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms