RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 GIMAP4Q9NUV9 329 aa6.4□□□□□ -1.39
USF3-202ENST00000478658 CCDC9Q9Y3X0 531 aaKnown RBP6.4□□□□□ -1.39
USF3-202ENST00000478658 NINLQ9Y2I6 1382 aa6.4□□□□□ -1.39
USF3-202ENST00000478658 DDX58O95786 925 aaKnown RBP6.4□□□□□ -1.39
USF3-202ENST00000478658 C16orf72Q14CZ0 275 aa6.4□□□□□ -1.39
USF3-202ENST00000478658 KTN1Q86UP2 1357 aaKnown RBP6.4□□□□□ -1.39
USF3-202ENST00000478658 CCDC102AQ96A19 550 aa6.4□□□□□ -1.39
USF3-202ENST00000478658 COMMD10Q9Y6G5 202 aa6.4□□□□□ -1.39
USF3-202ENST00000478658 FAM13BQ9NYF5 915 aa6.39□□□□□ -1.39
USF3-202ENST00000478658 FGFR1OPO95684 399 aaKnown RBP6.39□□□□□ -1.39
USF3-202ENST00000478658 HSP90AB3PQ58FF7 597 aa6.39□□□□□ -1.39
USF3-202ENST00000478658 CUL5Q93034 780 aa6.39□□□□□ -1.39
USF3-202ENST00000478658 CCDC94Q9BW85 323 aaPredicted RBP6.39□□□□□ -1.39
USF3-202ENST00000478658 TRIM6-TRIM34B2RNG4 842 aa6.39□□□□□ -1.39
USF3-202ENST00000478658 ARID4AP29374 1257 aaPredicted RBP6.39□□□□□ -1.39
USF3-202ENST00000478658 CEP128Q6ZU80 1094 aa6.39□□□□□ -1.39
USF3-202ENST00000478658 DDX10Q13206 875 aaKnown RBP6.39□□□□□ -1.39
USF3-202ENST00000478658 AAMPQ13685 434 aa6.39□□□□□ -1.39
USF3-202ENST00000478658 ZNF287Q9HBT7 754 aa6.39□□□□□ -1.39
USF3-202ENST00000478658 CCDC174Q6PII3 467 aa6.39□□□□□ -1.39
USF3-202ENST00000478658 CAPZA3Q96KX2 299 aa6.39□□□□□ -1.39
USF3-202ENST00000478658 CFDP1Q9UEE9 299 aaPredicted RBP6.39□□□□□ -1.39
USF3-202ENST00000478658 HIP1O00291 1037 aa6.38□□□□□ -1.39
USF3-202ENST00000478658 APBB1IPQ7Z5R6 666 aaPredicted RBP6.38□□□□□ -1.39
USF3-202ENST00000478658 RNF214Q8ND24 703 aa6.38□□□□□ -1.39
USF3-202ENST00000478658 PLCD4Q9BRC7 762 aa6.38□□□□□ -1.39
USF3-202ENST00000478658 BMP2KQ9NSY1 1161 aaPredicted RBP6.38□□□□□ -1.39
USF3-202ENST00000478658 ODF2LQ9ULJ1 636 aa6.38□□□□□ -1.39
USF3-202ENST00000478658 ZBTB24O43167 697 aaPredicted RBP6.38□□□□□ -1.39
USF3-202ENST00000478658 MAP2K1Q02750 393 aaPredicted RBP6.38□□□□□ -1.39
USF3-202ENST00000478658 MPHOSPH10O00566 681 aaKnown RBP6.38□□□□□ -1.39
USF3-202ENST00000478658 CCDC181Q5TID7 509 aa6.38□□□□□ -1.39
USF3-202ENST00000478658 EIF2S2P20042 333 aaKnown RBP6.38□□□□□ -1.39
USF3-202ENST00000478658 SEPT8Q92599 483 aa6.38□□□□□ -1.39
USF3-202ENST00000478658 NAP1L3Q99457 506 aaPredicted RBP6.38□□□□□ -1.39
USF3-202ENST00000478658 CALCOCO2Q13137 446 aa6.38□□□□□ -1.39
USF3-202ENST00000478658 ZNF397Q8NF99 534 aaPredicted RBP6.38□□□□□ -1.39
USF3-202ENST00000478658 SPECC1LQ69YQ0 1117 aa6.38□□□□□ -1.39
USF3-202ENST00000478658 PLVAPQ9BX97 442 aa6.38□□□□□ -1.39
USF3-202ENST00000478658 SMTNL1A8MU46 457 aa6.38□□□□□ -1.39
USF3-202ENST00000478658 PSMA4P25789 261 aaKnown RBP6.38□□□□□ -1.39
USF3-202ENST00000478658 AIMP1Q12904 312 aaKnown RBP6.38□□□□□ -1.39
USF3-202ENST00000478658 C10orf67Q8IYJ2 551 aa6.38□□□□□ -1.39
USF3-202ENST00000478658 NGEFQ8N5V2 710 aa6.38□□□□□ -1.39
USF3-202ENST00000478658 GNL3LQ9NVN8 582 aaKnown RBP6.38□□□□□ -1.39
USF3-202ENST00000478658 IMMTQ16891 758 aaKnown RBP6.37□□□□□ -1.39
USF3-202ENST00000478658 EP400NLQ6ZTU2 488 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 PDCP20941 246 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 SNX16P57768 344 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 KRT83P78385 493 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 ERCC6LQ2NKX8 1250 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 CCDC117Q8IWD4 279 aaPredicted RBP6.37□□□□□ -1.39
USF3-202ENST00000478658 TERF2IPQ9NYB0 399 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 RSPH3Q86UC2 560 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 PDILTQ8N807 584 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 TTC21AQ8NDW8 1320 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 CFAP157Q5JU67 520 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 CBFA2T2O43439 604 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 PRC1O43663 620 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 ARMC9Q7Z3E5 817 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 PATL1Q86TB9 770 aaKnown RBP6.37□□□□□ -1.39
USF3-202ENST00000478658 RNF168Q8IYW5 571 aaPredicted RBP6.37□□□□□ -1.39
USF3-202ENST00000478658 PSPC1Q8WXF1 523 aaKnown RBP6.37□□□□□ -1.39
USF3-202ENST00000478658 FAM8A1Q9UBU6 413 aa6.37□□□□□ -1.39
USF3-202ENST00000478658 EEA1Q15075 1411 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 CCER2I3L3R5 266 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 DYNC1I1O14576 645 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 TACC1O75410 805 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 PSMA5P28066 241 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 RBM25P49756 843 aaKnown RBP6.36□□□□□ -1.39
USF3-202ENST00000478658 CAMK4Q16566 473 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 MAP3K11Q16584 847 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 C1orf141Q5JVX7 400 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 FMNL3Q8IVF7 1028 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 HAUS8Q9BT25 410 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 STMN4Q9H169 189 aaPredicted RBP6.36□□□□□ -1.39
USF3-202ENST00000478658 CEP83Q9Y592 693 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 PDCD2Q16342 344 aaPredicted RBP6.36□□□□□ -1.39
USF3-202ENST00000478658 CCDC148Q8NFR7 591 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 GAS8O95995 478 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 ZBTB17Q13105 803 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 MCM6Q14566 821 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 DNAJC2Q99543 621 aaKnown RBP6.36□□□□□ -1.39
USF3-202ENST00000478658 KRT18P05783 430 aaKnown RBP6.36□□□□□ -1.39
USF3-202ENST00000478658 PDCL2Q8N4E4 241 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 KIF2AO00139 706 aaPredicted RBP6.36□□□□□ -1.39
USF3-202ENST00000478658 NDC80O14777 642 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 WDR78Q5VTH9 848 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 ZSCAN31Q96LW9 406 aaPredicted RBP6.36□□□□□ -1.39
USF3-202ENST00000478658 FAM184BQ9ULE4 1060 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.36□□□□□ -1.39
USF3-202ENST00000478658 CFAP58Q5T655 872 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 SRCIN1Q9C0H9 1055 aa6.36□□□□□ -1.39
USF3-202ENST00000478658 POTEB3A0JP26 581 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 POTEBQ6S5H4 581 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 NFXL1Q6ZNB6 911 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 RALYLQ86SE5 291 aaKnown RBP6.35□□□□□ -1.39
USF3-202ENST00000478658 KIAA1328Q86T90 577 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 CEP131Q9UPN4 1083 aa6.35□□□□□ -1.39
USF3-202ENST00000478658 CFAP100Q494V2 611 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms