RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 MAP10Q9P2G4 905 aa7.01□□□□□ -1.29
VPS13D-207ENST00000476169 FKBPLQ9UIM3 349 aa7.01□□□□□ -1.29
VPS13D-207ENST00000476169 ZBBXA8MT70 800 aa7□□□□□ -1.29
VPS13D-207ENST00000476169 F12P00748 615 aaPredicted RBP7□□□□□ -1.29
VPS13D-207ENST00000476169 CTHP32929 405 aa7□□□□□ -1.29
VPS13D-207ENST00000476169 ZC3H4Q9UPT8 1303 aaKnown RBP7□□□□□ -1.29
VPS13D-207ENST00000476169 SRPK2P78362 688 aaKnown RBP6.99□□□□□ -1.29
VPS13D-207ENST00000476169 WBP1LQ9NX94 342 aa6.99□□□□□ -1.29
VPS13D-207ENST00000476169 USTQ9Y2C2 406 aa6.99□□□□□ -1.29
VPS13D-207ENST00000476169 MAFBQ9Y5Q3 323 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-207ENST00000476169 CCNYL3P0C7X3 344 aa6.98□□□□□ -1.29
VPS13D-207ENST00000476169 MSS51Q4VC12 460 aa6.98□□□□□ -1.29
VPS13D-207ENST00000476169 TBC1D9Q6ZT07 1266 aa6.98□□□□□ -1.29
VPS13D-207ENST00000476169 ATP9BO43861 1147 aa6.97□□□□□ -1.29
VPS13D-207ENST00000476169 COPS2P61201 443 aa6.97□□□□□ -1.29
VPS13D-207ENST00000476169 CDCA8Q53HL2 280 aa6.97□□□□□ -1.29
VPS13D-207ENST00000476169 LCE2DQ5TA82 110 aaPredicted RBP6.97□□□□□ -1.29
VPS13D-207ENST00000476169 SPSB2Q99619 263 aa6.97□□□□□ -1.29
VPS13D-207ENST00000476169 DXOO77932 396 aaKnown RBP6.96□□□□□ -1.3
VPS13D-207ENST00000476169 FAM160A2Q8N612 972 aaPredicted RBP6.96□□□□□ -1.3
VPS13D-207ENST00000476169 ARMC2Q8NEN0 867 aa6.96□□□□□ -1.3
VPS13D-207ENST00000476169 NUDT12Q9BQG2 462 aa6.96□□□□□ -1.3
VPS13D-207ENST00000476169 ATG7O95352 703 aa6.95□□□□□ -1.3
VPS13D-207ENST00000476169 KCNH2Q12809 1159 aa6.95□□□□□ -1.3
VPS13D-207ENST00000476169 THSD4Q6ZMP0 1018 aa6.95□□□□□ -1.3
VPS13D-207ENST00000476169 PRDM9Q9NQV7 894 aa6.95□□□□□ -1.3
VPS13D-207ENST00000476169 EVA1BQ9NVM1 165 aa6.95□□□□□ -1.3
VPS13D-207ENST00000476169 PATL2C9JE40 543 aaKnown RBP6.94□□□□□ -1.3
VPS13D-207ENST00000476169 PIK3CDO00329 1044 aa6.94□□□□□ -1.3
VPS13D-207ENST00000476169 MMP16P51512 607 aa6.94□□□□□ -1.3
VPS13D-207ENST00000476169 PTK2Q05397 1052 aa6.94□□□□□ -1.3
VPS13D-207ENST00000476169 NFATC2IPQ8NCF5 419 aa6.94□□□□□ -1.3
VPS13D-207ENST00000476169 GPKOWQ92917 476 aaPredicted RBP eCLIP6.94□□□□□ -1.33e-6■■■□□ 15.3
VPS13D-207ENST00000476169 VRTNQ9H8Y1 702 aa6.94□□□□□ -1.3
VPS13D-207ENST00000476169 GPSM3Q9Y4H4 160 aa6.94□□□□□ -1.3
VPS13D-207ENST00000476169 TLL1O43897 1013 aa6.93□□□□□ -1.3
VPS13D-207ENST00000476169 BRD1O95696 1058 aa6.93□□□□□ -1.3
VPS13D-207ENST00000476169 ADH1BP00325 375 aa6.93□□□□□ -1.3
VPS13D-207ENST00000476169 SKIP12755 728 aa6.93□□□□□ -1.3
VPS13D-207ENST00000476169 NBPF14Q5TI25 921 aa6.93□□□□□ -1.3
VPS13D-207ENST00000476169 PDXDC2PQ6P474 469 aa6.93□□□□□ -1.3
VPS13D-207ENST00000476169 ZNF592Q92610 1267 aa6.93□□□□□ -1.3
VPS13D-207ENST00000476169 KCTD12Q96CX2 325 aaKnown RBP6.93□□□□□ -1.3
VPS13D-207ENST00000476169 GZF1Q9H116 711 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-207ENST00000476169 PCDHB9Q9Y5E1 797 aa6.93□□□□□ -1.3
VPS13D-207ENST00000476169 CARNS1A5YM72 827 aa6.92□□□□□ -1.3
VPS13D-207ENST00000476169 USP17L3A6NCW0 530 aa6.92□□□□□ -1.3
VPS13D-207ENST00000476169 USP17L4A6NCW7 530 aa6.92□□□□□ -1.3
VPS13D-207ENST00000476169 KCNA1Q09470 495 aa6.92□□□□□ -1.3
VPS13D-207ENST00000476169 TMCO4Q5TGY1 634 aa6.92□□□□□ -1.3
VPS13D-207ENST00000476169 USP17L2Q6R6M4 530 aa6.92□□□□□ -1.3
VPS13D-207ENST00000476169 USP17L1Q7RTZ2 530 aa6.92□□□□□ -1.3
VPS13D-207ENST00000476169 USP17L5A8MUK1 530 aa6.91□□□□□ -1.3
VPS13D-207ENST00000476169 ZPR1O75312 459 aa6.91□□□□□ -1.3
VPS13D-207ENST00000476169 SLFNL1Q499Z3 407 aa6.91□□□□□ -1.3
VPS13D-207ENST00000476169 NYAP1Q6ZVC0 841 aa6.91□□□□□ -1.3
VPS13D-207ENST00000476169 CCDC24Q8N4L8 307 aa6.91□□□□□ -1.3
VPS13D-207ENST00000476169 MCCD1P59942 119 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-207ENST00000476169 KANK4Q5T7N3 995 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-207ENST00000476169 PLEKHM2Q8IWE5 1019 aa6.9□□□□□ -1.3
VPS13D-207ENST00000476169 FAM174AQ8TBP5 190 aa6.9□□□□□ -1.3
VPS13D-207ENST00000476169 MTRQ99707 1265 aa6.9□□□□□ -1.3
VPS13D-207ENST00000476169 ARHGAP9Q9BRR9 750 aa6.9□□□□□ -1.3
VPS13D-207ENST00000476169 CEP126Q9P2H0 1117 aa6.9□□□□□ -1.3
VPS13D-207ENST00000476169 TMEM88BA6NKF7 163 aa6.89□□□□□ -1.31
VPS13D-207ENST00000476169 RNF135Q8IUD6 432 aa6.89□□□□□ -1.31
VPS13D-207ENST00000476169 DEPDC4Q8N2C3 294 aa6.89□□□□□ -1.31
VPS13D-207ENST00000476169 ADAM32Q8TC27 787 aa6.89□□□□□ -1.31
VPS13D-207ENST00000476169 OCSTAMPQ9BR26 566 aa6.89□□□□□ -1.31
VPS13D-207ENST00000476169 KRTAP3-3Q9BYR6 98 aa6.89□□□□□ -1.31
VPS13D-207ENST00000476169 KRTAP3-2Q9BYR7 98 aa6.89□□□□□ -1.31
VPS13D-207ENST00000476169 ELOAQ14241 798 aaKnown RBP6.88□□□□□ -1.31
VPS13D-207ENST00000476169 ZBTB33Q86T24 672 aa6.88□□□□□ -1.31
VPS13D-207ENST00000476169 UNC93B1Q9H1C4 597 aa6.88□□□□□ -1.31
VPS13D-207ENST00000476169 PTCRAQ6ISU1 281 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-207ENST00000476169 SLC6A16Q9GZN6 736 aa6.87□□□□□ -1.31
VPS13D-207ENST00000476169 IL21Q9HBE4 155 aa6.87□□□□□ -1.31
VPS13D-207ENST00000476169 NOVA2Q9UNW9 492 aaKnown RBP6.87□□□□□ -1.31
VPS13D-207ENST00000476169 PTPN5P54829 565 aa6.86□□□□□ -1.31
VPS13D-207ENST00000476169 NCOA4Q13772 614 aa6.86□□□□□ -1.31
VPS13D-207ENST00000476169 B4GALNT3Q6L9W6 998 aa6.86□□□□□ -1.31
VPS13D-207ENST00000476169 SH3BP5LQ7L8J4 393 aa6.86□□□□□ -1.31
VPS13D-207ENST00000476169 DZIP3Q86Y13 1208 aaKnown RBP6.86□□□□□ -1.31
VPS13D-207ENST00000476169 PLPP7Q8NBV4 271 aa6.86□□□□□ -1.31
VPS13D-207ENST00000476169 STK32AQ8WU08 396 aa6.86□□□□□ -1.31
VPS13D-207ENST00000476169 CARD14Q9BXL6 1004 aa6.86□□□□□ -1.31
VPS13D-207ENST00000476169 MKRN1Q9UHC7 482 aaKnown RBP6.86□□□□□ -1.31
VPS13D-207ENST00000476169 ZMIZ1Q9ULJ6 1067 aa6.86□□□□□ -1.31
VPS13D-207ENST00000476169 MTMR7Q9Y216 660 aa6.86□□□□□ -1.31
VPS13D-207ENST00000476169 MAGEB6P1A0A0J9YX57 407 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 FAM196BA6NMK8 535 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 USP17L15C9J2P7 530 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 USP17L10C9JJH3 530 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 USP17L13C9JLJ4 530 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 USP17L12C9JPN9 530 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 USP17L11C9JVI0 530 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 USP17L21D6R901 530 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 USP17L18D6R9N7 530 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 USP17L22D6RA61 530 aa6.85□□□□□ -1.31
VPS13D-207ENST00000476169 USP17L17D6RBQ6 530 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms