RNA–Protein interactions for RNA: ENST00000473924.1

DDX56-209, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-209ENST00000473924 HAP1P54257 671 aaPredicted RBP17.27■□□□□ 0.36
DDX56-209ENST00000473924 USP6P35125 1406 aa17.27■□□□□ 0.35
DDX56-209ENST00000473924 MED1Q15648 1581 aaPredicted RBP17.27■□□□□ 0.35
DDX56-209ENST00000473924 KTN1Q86UP2 1357 aaKnown RBP17.27■□□□□ 0.35
DDX56-209ENST00000473924 COL22A1Q8NFW1 1626 aaPredicted RBP17.26■□□□□ 0.35
DDX56-209ENST00000473924 BRD4O60885 1362 aaPredicted RBP17.26■□□□□ 0.35
DDX56-209ENST00000473924 CPSF1Q10570 1443 aaKnown RBP17.25■□□□□ 0.35
DDX56-209ENST00000473924 ABTB2Q8N961 1025 aa17.25■□□□□ 0.35
DDX56-209ENST00000473924 AKAP12Q02952 1782 aa17.25■□□□□ 0.35
DDX56-209ENST00000473924 ALS2Q96Q42 1657 aa17.24■□□□□ 0.35
DDX56-209ENST00000473924 PHF23Q9BUL5 403 aaPredicted RBP17.24■□□□□ 0.35
DDX56-209ENST00000473924 LRP6O75581 1613 aa17.24■□□□□ 0.35
DDX56-209ENST00000473924 ADAMTS2O95450 1211 aa17.23■□□□□ 0.35
DDX56-209ENST00000473924 NUTM2GQ5VZR2 741 aa17.23■□□□□ 0.35
DDX56-209ENST00000473924 CD163L1Q9NR16 1453 aa17.23■□□□□ 0.35
DDX56-209ENST00000473924 CABLES1Q8TDN4 633 aa17.22■□□□□ 0.35
DDX56-209ENST00000473924 A0A1W2PP64 1363 aa17.22■□□□□ 0.35
DDX56-209ENST00000473924 TTC21BQ7Z4L5 1316 aa17.21■□□□□ 0.35
DDX56-209ENST00000473924 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.21■□□□□ 0.35
DDX56-209ENST00000473924 MON2Q7Z3U7 1717 aa17.21■□□□□ 0.35
DDX56-209ENST00000473924 TTC21AQ8NDW8 1320 aa17.21■□□□□ 0.34
DDX56-209ENST00000473924 ANKRD36BQ8N2N9 1353 aa17.2■□□□□ 0.34
DDX56-209ENST00000473924 SOCS7O14512 581 aa17.2■□□□□ 0.34
DDX56-209ENST00000473924 ILDR2Q71H61 639 aa17.2■□□□□ 0.34
DDX56-209ENST00000473924 NLRP13Q86W25 1043 aa17.2■□□□□ 0.34
DDX56-209ENST00000473924 SSH2Q76I76 1423 aa17.2■□□□□ 0.34
DDX56-209ENST00000473924 C11orf95C9JLR9 678 aaPredicted RBP17.19■□□□□ 0.34
DDX56-209ENST00000473924 NLRP6P59044 892 aa17.19■□□□□ 0.34
DDX56-209ENST00000473924 C8orf37Q96NL8 207 aa17.19■□□□□ 0.34
DDX56-209ENST00000473924 EDC4Q6P2E9 1401 aaKnown RBP17.19■□□□□ 0.34
DDX56-209ENST00000473924 MYOM1P52179 1685 aa17.18■□□□□ 0.34
DDX56-209ENST00000473924 NRKQ7Z2Y5 1582 aa17.18■□□□□ 0.34
DDX56-209ENST00000473924 NGLY1Q96IV0 654 aa17.17■□□□□ 0.34
DDX56-209ENST00000473924 ABCA3Q99758 1704 aa17.16■□□□□ 0.34
DDX56-209ENST00000473924 PIK3C2AO00443 1686 aa17.16■□□□□ 0.34
DDX56-209ENST00000473924 KIF7Q2M1P5 1343 aa17.16■□□□□ 0.34
DDX56-209ENST00000473924 MARF1Q9Y4F3 1742 aaKnown RBP17.14■□□□□ 0.33
DDX56-209ENST00000473924 NME9Q86XW9 330 aa17.14■□□□□ 0.33
DDX56-209ENST00000473924 PHRF1Q9P1Y6 1649 aaKnown RBP17.14■□□□□ 0.33
DDX56-209ENST00000473924 CRYBG1Q9Y4K1 1723 aa17.13■□□□□ 0.33
DDX56-209ENST00000473924 USP19O94966 1318 aa17.13■□□□□ 0.33
DDX56-209ENST00000473924 AFF2P51816 1311 aa17.13■□□□□ 0.33
DDX56-209ENST00000473924 GCP02774 474 aa17.12■□□□□ 0.33
DDX56-209ENST00000473924 ZC3H6P61129 1189 aaKnown RBP17.12■□□□□ 0.33
DDX56-209ENST00000473924 ZNF772Q68DY9 489 aaPredicted RBP17.12■□□□□ 0.33
DDX56-209ENST00000473924 PANK3Q9H999 370 aa17.11■□□□□ 0.33
DDX56-209ENST00000473924 PRDM11Q9NQV5 511 aa17.11■□□□□ 0.33
DDX56-209ENST00000473924 ZRANB1Q9UGI0 708 aa17.11■□□□□ 0.33
DDX56-209ENST00000473924 CCDC7Q96M83 1385 aa17.11■□□□□ 0.33
DDX56-209ENST00000473924 NSD3Q9BZ95 1437 aa17.11■□□□□ 0.33
DDX56-209ENST00000473924 SOX12O15370 315 aa17.1■□□□□ 0.33
DDX56-209ENST00000473924 KCNH5Q8NCM2 988 aa17.1■□□□□ 0.33
DDX56-209ENST00000473924 CARD14Q9BXL6 1004 aa17.1■□□□□ 0.33
DDX56-209ENST00000473924 WASHC2AQ641Q2 1341 aa17.1■□□□□ 0.33
DDX56-209ENST00000473924 USP31Q70CQ4 1352 aa17.1■□□□□ 0.33
DDX56-209ENST00000473924 ZBTB7CA1YPR0 619 aa17.09■□□□□ 0.33
DDX56-209ENST00000473924 COG3Q96JB2 828 aa17.09■□□□□ 0.33
DDX56-209ENST00000473924 RGS17Q9UGC6 210 aaPredicted RBP17.09■□□□□ 0.33
DDX56-209ENST00000473924 USP21Q9UK80 565 aa17.09■□□□□ 0.33
DDX56-209ENST00000473924 KIAA0232Q92628 1395 aa17.09■□□□□ 0.33
DDX56-209ENST00000473924 SLIT3O75094 1523 aa17.08■□□□□ 0.32
DDX56-209ENST00000473924 FAM83GA6ND36 823 aa17.08■□□□□ 0.32
DDX56-209ENST00000473924 FNBP4Q8N3X1 1017 aaPredicted RBP17.08■□□□□ 0.32
DDX56-209ENST00000473924 CGNL1Q0VF96 1302 aa17.07■□□□□ 0.32
DDX56-209ENST00000473924 FYB1O15117 783 aa17.07■□□□□ 0.32
DDX56-209ENST00000473924 CHRNA2Q15822 529 aa17.07■□□□□ 0.32
DDX56-209ENST00000473924 GGNBP2Q9H3C7 697 aa17.07■□□□□ 0.32
DDX56-209ENST00000473924 COL14A1Q05707 1796 aaKnown RBP17.06■□□□□ 0.32
DDX56-209ENST00000473924 USP54Q70EL1 1684 aa17.06■□□□□ 0.32
DDX56-209ENST00000473924 OVOS2A0A0J9YW53 1432 aa17.05■□□□□ 0.32
DDX56-209ENST00000473924 OVOS2Q6IE36 1432 aa17.05■□□□□ 0.32
DDX56-209ENST00000473924 KIF20BQ96Q89 1820 aa17.05■□□□□ 0.32
DDX56-209ENST00000473924 CPDO75976 1380 aa17.05■□□□□ 0.32
DDX56-209ENST00000473924 PLCH1Q4KWH8 1693 aa17.05■□□□□ 0.32
DDX56-209ENST00000473924 BTG4Q9NY30 223 aa17.05■□□□□ 0.32
DDX56-209ENST00000473924 KNSTRNQ9Y448 316 aa17.05■□□□□ 0.32
DDX56-209ENST00000473924 POTEAQ6S8J7 498 aa17.04■□□□□ 0.32
DDX56-209ENST00000473924 UNC5CLQ8IV45 518 aa17.04■□□□□ 0.32
DDX56-209ENST00000473924 QTRT2Q9H974 415 aaKnown RBP17.04■□□□□ 0.32
DDX56-209ENST00000473924 SLIT2O94813 1529 aa17.04■□□□□ 0.32
DDX56-209ENST00000473924 TRPC5Q9UL62 973 aaPredicted RBP17.03■□□□□ 0.32
DDX56-209ENST00000473924 NWD2Q9ULI1 1742 aa17.02■□□□□ 0.32
DDX56-209ENST00000473924 BCL9LQ86UU0 1499 aa17.02■□□□□ 0.32
DDX56-209ENST00000473924 NFAT5O94916 1531 aa17.01■□□□□ 0.31
DDX56-209ENST00000473924 ARHGEF25Q86VW2 580 aa17.01■□□□□ 0.31
DDX56-209ENST00000473924 CCDC9Q9Y3X0 531 aaKnown RBP17.01■□□□□ 0.31
DDX56-209ENST00000473924 RXRBP28702 533 aa17■□□□□ 0.31
DDX56-209ENST00000473924 EVA1CP58658 441 aa17■□□□□ 0.31
DDX56-209ENST00000473924 TNKS1BP1Q9C0C2 1729 aaKnown RBP17■□□□□ 0.31
DDX56-209ENST00000473924 STRN4Q9NRL3 753 aa17■□□□□ 0.31
DDX56-209ENST00000473924 AATKQ6ZMQ8 1374 aa17■□□□□ 0.31
DDX56-209ENST00000473924 ATRNO75882 1429 aa16.98■□□□□ 0.31
DDX56-209ENST00000473924 RBM6P78332 1123 aaKnown RBP16.98■□□□□ 0.31
DDX56-209ENST00000473924 NSD2O96028 1365 aa16.98■□□□□ 0.31
DDX56-209ENST00000473924 LTN1O94822 1766 aa16.97■□□□□ 0.31
DDX56-209ENST00000473924 NRAPQ86VF7 1730 aa16.97■□□□□ 0.31
DDX56-209ENST00000473924 VPS72Q15906 364 aa16.97■□□□□ 0.31
DDX56-209ENST00000473924 LMO7Q8WWI1 1683 aa16.97■□□□□ 0.31
DDX56-209ENST00000473924 CAMTA1Q9Y6Y1 1673 aa16.97■□□□□ 0.31
DDX56-209ENST00000473924 FBLN1P23142 703 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms