RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 NRAPQ86VF7 1730 aa12.97□□□□□ -0.33
USF1-204ENST00000472217 PAK3O75914 559 aaPredicted RBP12.97□□□□□ -0.33
USF1-204ENST00000472217 CCDC61Q9Y6R9 512 aa12.97□□□□□ -0.33
USF1-204ENST00000472217 PHRF1Q9P1Y6 1649 aaKnown RBP12.97□□□□□ -0.33
USF1-204ENST00000472217 COL14A1Q05707 1796 aaKnown RBP12.97□□□□□ -0.33
USF1-204ENST00000472217 ROCK2O75116 1388 aaKnown RBP12.96□□□□□ -0.33
USF1-204ENST00000472217 ATAD2Q6PL18 1390 aa12.96□□□□□ -0.33
USF1-204ENST00000472217 ACEP12821 1306 aa12.96□□□□□ -0.33
USF1-204ENST00000472217 PPIP5K1Q6PFW1 1433 aa12.96□□□□□ -0.34
USF1-204ENST00000472217 PLEKHG3A1L390 1219 aa12.95□□□□□ -0.34
USF1-204ENST00000472217 FAM83GA6ND36 823 aa12.95□□□□□ -0.34
USF1-204ENST00000472217 SRPK2P78362 688 aaKnown RBP12.95□□□□□ -0.34
USF1-204ENST00000472217 TRIM26Q12899 539 aaPredicted RBP12.94□□□□□ -0.34
USF1-204ENST00000472217 VPS72Q15906 364 aa12.94□□□□□ -0.34
USF1-204ENST00000472217 NBPF8Q3BBV2 869 aa12.94□□□□□ -0.34
USF1-204ENST00000472217 CABP2Q9NPB3 220 aa12.94□□□□□ -0.34
USF1-204ENST00000472217 BRWD3Q6RI45 1802 aa12.92□□□□□ -0.34
USF1-204ENST00000472217 NRKQ7Z2Y5 1582 aa12.92□□□□□ -0.34
USF1-204ENST00000472217 BTG4Q9NY30 223 aa12.92□□□□□ -0.34
USF1-204ENST00000472217 CCDC9Q9Y3X0 531 aaKnown RBP12.92□□□□□ -0.34
USF1-204ENST00000472217 NUTM2GQ5VZR2 741 aa12.91□□□□□ -0.34
USF1-204ENST00000472217 TONSLQ96HA7 1378 aa12.91□□□□□ -0.34
USF1-204ENST00000472217 EVC2Q86UK5 1308 aa12.9□□□□□ -0.34
USF1-204ENST00000472217 PRDM11Q9NQV5 511 aa12.9□□□□□ -0.34
USF1-204ENST00000472217 KIAA0232Q92628 1395 aa12.9□□□□□ -0.34
USF1-204ENST00000472217 USP6P35125 1406 aa12.89□□□□□ -0.35
USF1-204ENST00000472217 SEPT12Q8IYM1 358 aa12.89□□□□□ -0.35
USF1-204ENST00000472217 CABP1Q9NZU7 370 aa12.89□□□□□ -0.35
USF1-204ENST00000472217 USP19O94966 1318 aa12.88□□□□□ -0.35
USF1-204ENST00000472217 ZC3H6P61129 1189 aaKnown RBP12.88□□□□□ -0.35
USF1-204ENST00000472217 ABTB2Q8N961 1025 aa12.88□□□□□ -0.35
USF1-204ENST00000472217 BRD4O60885 1362 aaPredicted RBP12.88□□□□□ -0.35
USF1-204ENST00000472217 PIK3C2AO00443 1686 aa12.87□□□□□ -0.35
USF1-204ENST00000472217 ONECUT3O60422 494 aaPredicted RBP12.87□□□□□ -0.35
USF1-204ENST00000472217 CHRNA2Q15822 529 aa12.87□□□□□ -0.35
USF1-204ENST00000472217 CARD11Q9BXL7 1154 aa12.87□□□□□ -0.35
USF1-204ENST00000472217 AKAP12Q02952 1782 aa12.86□□□□□ -0.35
USF1-204ENST00000472217 LMO7Q8WWI1 1683 aa12.86□□□□□ -0.35
USF1-204ENST00000472217 SBNO2Q9Y2G9 1366 aa12.86□□□□□ -0.35
USF1-204ENST00000472217 FAM98CQ17RN3 349 aaKnown RBP12.86□□□□□ -0.35
USF1-204ENST00000472217 SSH2Q76I76 1423 aa12.86□□□□□ -0.35
USF1-204ENST00000472217 THSD7AQ9UPZ6 1657 aa12.86□□□□□ -0.35
USF1-204ENST00000472217 SPATA31A5Q5VU36 1347 aa12.86□□□□□ -0.35
USF1-204ENST00000472217 SPATA31A7Q8IWB4 1347 aa12.86□□□□□ -0.35
USF1-204ENST00000472217 SLIT3O75094 1523 aa12.85□□□□□ -0.35
USF1-204ENST00000472217 NLRP13Q86W25 1043 aa12.85□□□□□ -0.35
USF1-204ENST00000472217 CPDO75976 1380 aa12.84□□□□□ -0.35
USF1-204ENST00000472217 CAMTA1Q9Y6Y1 1673 aa12.84□□□□□ -0.35
USF1-204ENST00000472217 A0A0G2JS52 829 aa12.84□□□□□ -0.35
USF1-204ENST00000472217 MYT1Q01538 1121 aa12.84□□□□□ -0.35
USF1-204ENST00000472217 KRT27Q7Z3Y8 459 aa12.84□□□□□ -0.35
USF1-204ENST00000472217 CCDC125Q86Z20 511 aa12.84□□□□□ -0.35
USF1-204ENST00000472217 BLMP54132 1417 aaPredicted RBP12.83□□□□□ -0.36
USF1-204ENST00000472217 CPSF1Q10570 1443 aaKnown RBP12.83□□□□□ -0.36
USF1-204ENST00000472217 GCP02774 474 aa12.83□□□□□ -0.36
USF1-204ENST00000472217 STRN4Q9NRL3 753 aa12.83□□□□□ -0.36
USF1-204ENST00000472217 MON2Q7Z3U7 1717 aa12.82□□□□□ -0.36
USF1-204ENST00000472217 NLRP6P59044 892 aa12.82□□□□□ -0.36
USF1-204ENST00000472217 SPATA31A1Q5TZJ5 1347 aa12.82□□□□□ -0.36
USF1-204ENST00000472217 TTC21BQ7Z4L5 1316 aa12.81□□□□□ -0.36
USF1-204ENST00000472217 COL5A2P05997 1499 aaPredicted RBP12.8□□□□□ -0.36
USF1-204ENST00000472217 ZNF692Q9BU19 519 aaPredicted RBP12.8□□□□□ -0.36
USF1-204ENST00000472217 KTN1Q86UP2 1357 aaKnown RBP12.8□□□□□ -0.36
USF1-204ENST00000472217 EP400Q96L91 3159 aa12.79□□□□□ -0.36
USF1-204ENST00000472217 CD163L1Q9NR16 1453 aa12.79□□□□□ -0.36
USF1-204ENST00000472217 EVA1CP58658 441 aa12.79□□□□□ -0.36
USF1-204ENST00000472217 TTC21AQ8NDW8 1320 aa12.79□□□□□ -0.36
USF1-204ENST00000472217 ZBTB7CA1YPR0 619 aa12.78□□□□□ -0.36
USF1-204ENST00000472217 FAM182BQ5T319 152 aa12.78□□□□□ -0.36
USF1-204ENST00000472217 LARP1Q6PKG0 1096 aaKnown RBP12.78□□□□□ -0.36
USF1-204ENST00000472217 USP35Q9P2H5 1018 aa12.78□□□□□ -0.36
USF1-204ENST00000472217 COL18A1P39060 1754 aa12.78□□□□□ -0.36
USF1-204ENST00000472217 USP54Q70EL1 1684 aa12.77□□□□□ -0.36
USF1-204ENST00000472217 RGPD1P0DJD0 1748 aa12.77□□□□□ -0.36
USF1-204ENST00000472217 AATKQ6ZMQ8 1374 aa12.77□□□□□ -0.37
USF1-204ENST00000472217 NFAT5O94916 1531 aa12.77□□□□□ -0.37
USF1-204ENST00000472217 SF3B2Q13435 895 aaKnown RBP12.76□□□□□ -0.37
USF1-204ENST00000472217 BARGINQ6ZT62 677 aa12.76□□□□□ -0.37
USF1-204ENST00000472217 DEFB132Q7Z7B7 95 aa12.76□□□□□ -0.37
USF1-204ENST00000472217 TESK2Q96S53 571 aa12.76□□□□□ -0.37
USF1-204ENST00000472217 CRB1P82279 1406 aa12.76□□□□□ -0.37
USF1-204ENST00000472217 TNS1Q9HBL0 1735 aaKnown RBP12.76□□□□□ -0.37
USF1-204ENST00000472217 ST20-MTHFSA0A0A6YYL1 179 aa12.75□□□□□ -0.37
USF1-204ENST00000472217 TMC1Q8TDI8 760 aa12.75□□□□□ -0.37
USF1-204ENST00000472217 ZRANB1Q9UGI0 708 aa12.75□□□□□ -0.37
USF1-204ENST00000472217 RGPD5Q99666 1765 aa12.74□□□□□ -0.37
USF1-204ENST00000472217 PARP4Q9UKK3 1724 aaKnown RBP12.74□□□□□ -0.37
USF1-204ENST00000472217 EDC4Q6P2E9 1401 aaKnown RBP12.74□□□□□ -0.37
USF1-204ENST00000472217 A0A1W2PP64 1363 aa12.74□□□□□ -0.37
USF1-204ENST00000472217 SOX12O15370 315 aa12.74□□□□□ -0.37
USF1-204ENST00000472217 ARHGEF25Q86VW2 580 aa12.74□□□□□ -0.37
USF1-204ENST00000472217 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.74□□□□□ -0.37
USF1-204ENST00000472217 TCP11L2Q8N4U5 519 aa12.74□□□□□ -0.37
USF1-204ENST00000472217 KCNH5Q8NCM2 988 aa12.74□□□□□ -0.37
USF1-204ENST00000472217 PUS7Q96PZ0 661 aaKnown RBP12.74□□□□□ -0.37
USF1-204ENST00000472217 SLC12A5Q9H2X9 1139 aa12.74□□□□□ -0.37
USF1-204ENST00000472217 USP31Q70CQ4 1352 aa12.73□□□□□ -0.37
USF1-204ENST00000472217 HDGFL2Q7Z4V5 671 aaPredicted RBP12.73□□□□□ -0.37
USF1-204ENST00000472217 AXIN2Q9Y2T1 843 aa12.73□□□□□ -0.37
USF1-204ENST00000472217 THRAP3Q9Y2W1 955 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms