RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 EDC4Q6P2E9 1401 aaKnown RBP17.42■□□□□ 0.38
SPTLC1-204ENST00000469778 NLRP13Q86W25 1043 aa17.42■□□□□ 0.38
SPTLC1-204ENST00000469778 ABTB2Q8N961 1025 aa17.42■□□□□ 0.38
SPTLC1-204ENST00000469778 POLR3GLQ9BT43 218 aa17.42■□□□□ 0.38
SPTLC1-204ENST00000469778 TTC21BQ7Z4L5 1316 aa17.42■□□□□ 0.38
SPTLC1-204ENST00000469778 CD163L1Q9NR16 1453 aa17.41■□□□□ 0.38
SPTLC1-204ENST00000469778 A0A1W2PP64 1363 aa17.4■□□□□ 0.38
SPTLC1-204ENST00000469778 PNPLA6Q8IY17 1366 aa17.4■□□□□ 0.38
SPTLC1-204ENST00000469778 LMOD2Q6P5Q4 547 aa17.4■□□□□ 0.38
SPTLC1-204ENST00000469778 WASHC2AQ641Q2 1341 aa17.4■□□□□ 0.38
SPTLC1-204ENST00000469778 PANK3Q9H999 370 aa17.38■□□□□ 0.37
SPTLC1-204ENST00000469778 SHPRHQ149N8 1683 aa17.37■□□□□ 0.37
SPTLC1-204ENST00000469778 TRPM3Q9HCF6 1732 aaPredicted RBP17.37■□□□□ 0.37
SPTLC1-204ENST00000469778 AKAP12Q02952 1782 aa17.37■□□□□ 0.37
SPTLC1-204ENST00000469778 NLRP6P59044 892 aa17.36■□□□□ 0.37
SPTLC1-204ENST00000469778 CGNL1Q0VF96 1302 aa17.36■□□□□ 0.37
SPTLC1-204ENST00000469778 USP31Q70CQ4 1352 aa17.36■□□□□ 0.37
SPTLC1-204ENST00000469778 COL22A1Q8NFW1 1626 aaPredicted RBP17.36■□□□□ 0.37
SPTLC1-204ENST00000469778 KCNH5Q8NCM2 988 aa17.35■□□□□ 0.37
SPTLC1-204ENST00000469778 CARD14Q9BXL6 1004 aa17.35■□□□□ 0.37
SPTLC1-204ENST00000469778 HAP1P54257 671 aaPredicted RBP17.34■□□□□ 0.37
SPTLC1-204ENST00000469778 MON2Q7Z3U7 1717 aa17.34■□□□□ 0.37
SPTLC1-204ENST00000469778 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.34■□□□□ 0.37
SPTLC1-204ENST00000469778 KNSTRNQ9Y448 316 aa17.34■□□□□ 0.37
SPTLC1-204ENST00000469778 ALS2Q96Q42 1657 aa17.33■□□□□ 0.37
SPTLC1-204ENST00000469778 USP19O94966 1318 aa17.33■□□□□ 0.36
SPTLC1-204ENST00000469778 ZNF316A6NFI3 1004 aaPredicted RBP17.32■□□□□ 0.36
SPTLC1-204ENST00000469778 FYB1O15117 783 aa17.32■□□□□ 0.36
SPTLC1-204ENST00000469778 MYOM1P52179 1685 aa17.32■□□□□ 0.36
SPTLC1-204ENST00000469778 COG3Q96JB2 828 aa17.31■□□□□ 0.36
SPTLC1-204ENST00000469778 MED1Q15648 1581 aaPredicted RBP17.31■□□□□ 0.36
SPTLC1-204ENST00000469778 NSD2O96028 1365 aa17.3■□□□□ 0.36
SPTLC1-204ENST00000469778 PER1O15534 1290 aaPredicted RBP17.3■□□□□ 0.36
SPTLC1-204ENST00000469778 GCP02774 474 aa17.3■□□□□ 0.36
SPTLC1-204ENST00000469778 NME9Q86XW9 330 aa17.3■□□□□ 0.36
SPTLC1-204ENST00000469778 NSD3Q9BZ95 1437 aa17.3■□□□□ 0.36
SPTLC1-204ENST00000469778 NRKQ7Z2Y5 1582 aa17.29■□□□□ 0.36
SPTLC1-204ENST00000469778 NUTM2BA6NNL0 878 aaPredicted RBP17.29■□□□□ 0.36
SPTLC1-204ENST00000469778 NUTM2EB1AL46 878 aaPredicted RBP17.29■□□□□ 0.36
SPTLC1-204ENST00000469778 NUTM2AQ8IVF1 878 aaPredicted RBP17.29■□□□□ 0.36
SPTLC1-204ENST00000469778 NPC1L1Q9UHC9 1359 aa17.28■□□□□ 0.36
SPTLC1-204ENST00000469778 MEX3CQ5U5Q3 659 aaKnown RBP17.28■□□□□ 0.36
SPTLC1-204ENST00000469778 NUTM2GQ5VZR2 741 aa17.28■□□□□ 0.36
SPTLC1-204ENST00000469778 CPDO75976 1380 aa17.28■□□□□ 0.36
SPTLC1-204ENST00000469778 CABLES1Q8TDN4 633 aa17.27■□□□□ 0.36
SPTLC1-204ENST00000469778 ADAMTS2O95450 1211 aa17.25■□□□□ 0.35
SPTLC1-204ENST00000469778 NGLY1Q96IV0 654 aa17.25■□□□□ 0.35
SPTLC1-204ENST00000469778 PIK3C2AO00443 1686 aa17.25■□□□□ 0.35
SPTLC1-204ENST00000469778 OVOS2A0A0J9YW53 1432 aa17.24■□□□□ 0.35
SPTLC1-204ENST00000469778 OVOS2Q6IE36 1432 aa17.24■□□□□ 0.35
SPTLC1-204ENST00000469778 AMER1Q5JTC6 1135 aaPredicted RBP17.24■□□□□ 0.35
SPTLC1-204ENST00000469778 FNBP4Q8N3X1 1017 aaPredicted RBP17.24■□□□□ 0.35
SPTLC1-204ENST00000469778 SLIT3O75094 1523 aa17.24■□□□□ 0.35
SPTLC1-204ENST00000469778 USP54Q70EL1 1684 aa17.23■□□□□ 0.35
SPTLC1-204ENST00000469778 GGNBP2Q9H3C7 697 aa17.23■□□□□ 0.35
SPTLC1-204ENST00000469778 PRDM11Q9NQV5 511 aa17.23■□□□□ 0.35
SPTLC1-204ENST00000469778 FAM83GA6ND36 823 aa17.22■□□□□ 0.35
SPTLC1-204ENST00000469778 ZNF772Q68DY9 489 aaPredicted RBP17.22■□□□□ 0.35
SPTLC1-204ENST00000469778 ARHGEF25Q86VW2 580 aa17.22■□□□□ 0.35
SPTLC1-204ENST00000469778 ZRANB1Q9UGI0 708 aa17.22■□□□□ 0.35
SPTLC1-204ENST00000469778 LRP6O75581 1613 aa17.21■□□□□ 0.35
SPTLC1-204ENST00000469778 AATKQ6ZMQ8 1374 aa17.21■□□□□ 0.35
SPTLC1-204ENST00000469778 C8orf37Q96NL8 207 aa17.21■□□□□ 0.35
SPTLC1-204ENST00000469778 KIF24Q5T7B8 1368 aa17.2■□□□□ 0.34
SPTLC1-204ENST00000469778 KIAA0232Q92628 1395 aa17.2■□□□□ 0.34
SPTLC1-204ENST00000469778 ZC3H6P61129 1189 aaKnown RBP17.2■□□□□ 0.34
SPTLC1-204ENST00000469778 DDX10Q13206 875 aaKnown RBP17.2■□□□□ 0.34
SPTLC1-204ENST00000469778 MORC1Q86VD1 984 aa17.2■□□□□ 0.34
SPTLC1-204ENST00000469778 PLEKHG5O94827 1062 aa17.19■□□□□ 0.34
SPTLC1-204ENST00000469778 PHF23Q9BUL5 403 aaPredicted RBP17.19■□□□□ 0.34
SPTLC1-204ENST00000469778 CRYBG1Q9Y4K1 1723 aa17.18■□□□□ 0.34
SPTLC1-204ENST00000469778 UNC5CLQ8IV45 518 aa17.17■□□□□ 0.34
SPTLC1-204ENST00000469778 USP21Q9UK80 565 aa17.17■□□□□ 0.34
SPTLC1-204ENST00000469778 PHRF1Q9P1Y6 1649 aaKnown RBP17.17■□□□□ 0.34
SPTLC1-204ENST00000469778 NFAT5O94916 1531 aa17.16■□□□□ 0.34
SPTLC1-204ENST00000469778 ABCC6O95255 1503 aa17.16■□□□□ 0.34
SPTLC1-204ENST00000469778 ABCA3Q99758 1704 aa17.16■□□□□ 0.34
SPTLC1-204ENST00000469778 KIF20BQ96Q89 1820 aa17.16■□□□□ 0.34
SPTLC1-204ENST00000469778 AFF2P51816 1311 aa17.16■□□□□ 0.34
SPTLC1-204ENST00000469778 SLIT2O94813 1529 aa17.16■□□□□ 0.34
SPTLC1-204ENST00000469778 COL14A1Q05707 1796 aaKnown RBP17.15■□□□□ 0.34
SPTLC1-204ENST00000469778 EVA1CP58658 441 aa17.15■□□□□ 0.34
SPTLC1-204ENST00000469778 IP6K1Q92551 441 aa17.15■□□□□ 0.34
SPTLC1-204ENST00000469778 BTG4Q9NY30 223 aa17.15■□□□□ 0.34
SPTLC1-204ENST00000469778 TRPC5Q9UL62 973 aaPredicted RBP17.15■□□□□ 0.34
SPTLC1-204ENST00000469778 MARF1Q9Y4F3 1742 aaKnown RBP17.15■□□□□ 0.34
SPTLC1-204ENST00000469778 SOX12O15370 315 aa17.14■□□□□ 0.33
SPTLC1-204ENST00000469778 AMPHP49418 695 aa17.14■□□□□ 0.33
SPTLC1-204ENST00000469778 RTL1A6NKG5 1358 aa17.14■□□□□ 0.33
SPTLC1-204ENST00000469778 CC2D1BQ5T0F9 858 aaKnown RBP17.13■□□□□ 0.33
SPTLC1-204ENST00000469778 MAP3K19Q56UN5 1328 aa17.13■□□□□ 0.33
SPTLC1-204ENST00000469778 BCL9LQ86UU0 1499 aa17.12■□□□□ 0.33
SPTLC1-204ENST00000469778 RALBP1Q15311 655 aa17.12■□□□□ 0.33
SPTLC1-204ENST00000469778 CHRNA2Q15822 529 aa17.12■□□□□ 0.33
SPTLC1-204ENST00000469778 VPS72Q15906 364 aa17.12■□□□□ 0.33
SPTLC1-204ENST00000469778 BLMP54132 1417 aaPredicted RBP17.12■□□□□ 0.33
SPTLC1-204ENST00000469778 NWD2Q9ULI1 1742 aa17.11■□□□□ 0.33
SPTLC1-204ENST00000469778 ANKRD26Q9UPS8 1709 aa17.11■□□□□ 0.33
SPTLC1-204ENST00000469778 QTRT2Q9H974 415 aaKnown RBP17.11■□□□□ 0.33
SPTLC1-204ENST00000469778 POLKQ9UBT6 870 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms