RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 TONSLQ96HA7 1378 aa31.19■■■□□ 2.58
LIME1-203ENST00000465591 PLEKHG3A1L390 1219 aa31.19■■■□□ 2.58
LIME1-203ENST00000465591 SRPK2P78362 688 aaKnown RBP31.19■■■□□ 2.58
LIME1-203ENST00000465591 PAK3O75914 559 aaPredicted RBP31.18■■■□□ 2.58
LIME1-203ENST00000465591 UNC5CLQ8IV45 518 aa31.16■■■□□ 2.58
LIME1-203ENST00000465591 PPIP5K1Q6PFW1 1433 aa31.15■■■□□ 2.58
LIME1-203ENST00000465591 NWD2Q9ULI1 1742 aa31.15■■■□□ 2.58
LIME1-203ENST00000465591 FAM83GA6ND36 823 aa31.13■■■□□ 2.57
LIME1-203ENST00000465591 UPF1Q92900 1129 aaKnown RBP eCLIP31.13■■■□□ 2.57
LIME1-203ENST00000465591 RALGAPBQ86X10 1494 aa31.13■■■□□ 2.57
LIME1-203ENST00000465591 GLI3P10071 1580 aa31.13■■■□□ 2.57
LIME1-203ENST00000465591 GJD4Q96KN9 370 aaPredicted RBP31.12■■■□□ 2.57
LIME1-203ENST00000465591 PHRF1Q9P1Y6 1649 aaKnown RBP31.09■■■□□ 2.57
LIME1-203ENST00000465591 NRAPQ86VF7 1730 aa31.09■■■□□ 2.57
LIME1-203ENST00000465591 EVC2Q86UK5 1308 aa31.08■■■□□ 2.57
LIME1-203ENST00000465591 NUTM2GQ5VZR2 741 aa31.08■■■□□ 2.57
LIME1-203ENST00000465591 CARD11Q9BXL7 1154 aa31.07■■■□□ 2.56
LIME1-203ENST00000465591 CABP1Q9NZU7 370 aa31.07■■■□□ 2.56
LIME1-203ENST00000465591 COL14A1Q05707 1796 aaKnown RBP31.07■■■□□ 2.56
LIME1-203ENST00000465591 VPS72Q15906 364 aa31.03■■■□□ 2.56
LIME1-203ENST00000465591 USP6P35125 1406 aa31■■■□□ 2.55
LIME1-203ENST00000465591 BTG4Q9NY30 223 aa31■■■□□ 2.55
LIME1-203ENST00000465591 BRWD3Q6RI45 1802 aa30.99■■■□□ 2.55
LIME1-203ENST00000465591 ABTB2Q8N961 1025 aa30.99■■■□□ 2.55
LIME1-203ENST00000465591 KIAA0232Q92628 1395 aa30.99■■■□□ 2.55
LIME1-203ENST00000465591 SBNO2Q9Y2G9 1366 aa30.99■■■□□ 2.55
LIME1-203ENST00000465591 NRKQ7Z2Y5 1582 aa30.99■■■□□ 2.55
LIME1-203ENST00000465591 PRDM11Q9NQV5 511 aa30.97■■■□□ 2.55
LIME1-203ENST00000465591 AKAP12Q02952 1782 aa30.97■■■□□ 2.55
LIME1-203ENST00000465591 SSH2Q76I76 1423 aa30.96■■■□□ 2.55
LIME1-203ENST00000465591 USP19O94966 1318 aa30.96■■■□□ 2.55
LIME1-203ENST00000465591 ATAD2Q6PL18 1390 aa30.95■■■□□ 2.55
LIME1-203ENST00000465591 ZC3H6P61129 1189 aaKnown RBP30.95■■■□□ 2.55
LIME1-203ENST00000465591 CHRNA2Q15822 529 aa30.95■■■□□ 2.55
LIME1-203ENST00000465591 CCDC9Q9Y3X0 531 aaKnown RBP30.95■■■□□ 2.55
LIME1-203ENST00000465591 PCGF6Q9BYE7 350 aa30.94■■■□□ 2.54
LIME1-203ENST00000465591 BRD4O60885 1362 aaPredicted RBP30.93■■■□□ 2.54
LIME1-203ENST00000465591 PIK3C2AO00443 1686 aa30.93■■■□□ 2.54
LIME1-203ENST00000465591 SEPT12Q8IYM1 358 aa30.9■■■□□ 2.54
LIME1-203ENST00000465591 EP400Q96L91 3159 aa30.9■■■□□ 2.54
LIME1-203ENST00000465591 ONECUT3O60422 494 aaPredicted RBP30.89■■■□□ 2.54
LIME1-203ENST00000465591 NLRP13Q86W25 1043 aa30.89■■■□□ 2.54
LIME1-203ENST00000465591 CPSF1Q10570 1443 aaKnown RBP30.89■■■□□ 2.53
LIME1-203ENST00000465591 GCP02774 474 aa30.86■■■□□ 2.53
LIME1-203ENST00000465591 LMO7Q8WWI1 1683 aa30.86■■■□□ 2.53
LIME1-203ENST00000465591 MON2Q7Z3U7 1717 aa30.86■■■□□ 2.53
LIME1-203ENST00000465591 SLIT3O75094 1523 aa30.85■■■□□ 2.53
LIME1-203ENST00000465591 CPDO75976 1380 aa30.85■■■□□ 2.53
LIME1-203ENST00000465591 SPATA31A5Q5VU36 1347 aa30.85■■■□□ 2.53
LIME1-203ENST00000465591 SPATA31A7Q8IWB4 1347 aa30.85■■■□□ 2.53
LIME1-203ENST00000465591 CAMTA1Q9Y6Y1 1673 aa30.84■■■□□ 2.53
LIME1-203ENST00000465591 TTC21BQ7Z4L5 1316 aa30.84■■■□□ 2.53
LIME1-203ENST00000465591 NLRP6P59044 892 aa30.84■■■□□ 2.53
LIME1-203ENST00000465591 TESK2Q96S53 571 aa30.84■■■□□ 2.53
LIME1-203ENST00000465591 CD163L1Q9NR16 1453 aa30.83■■■□□ 2.53
LIME1-203ENST00000465591 ST20-MTHFSA0A0A6YYL1 179 aa30.83■■■□□ 2.53
LIME1-203ENST00000465591 FAM98CQ17RN3 349 aaKnown RBP30.83■■■□□ 2.53
LIME1-203ENST00000465591 ZNF692Q9BU19 519 aaPredicted RBP30.83■■■□□ 2.53
LIME1-203ENST00000465591 STRN4Q9NRL3 753 aa30.81■■■□□ 2.52
LIME1-203ENST00000465591 KTN1Q86UP2 1357 aaKnown RBP30.8■■■□□ 2.52
LIME1-203ENST00000465591 CLSPNQ9HAW4 1339 aa30.78■■■□□ 2.52
LIME1-203ENST00000465591 THSD7AQ9UPZ6 1657 aa30.78■■■□□ 2.52
LIME1-203ENST00000465591 SLC12A5Q9H2X9 1139 aa30.78■■■□□ 2.52
LIME1-203ENST00000465591 SPATA31A1Q5TZJ5 1347 aa30.77■■■□□ 2.52
LIME1-203ENST00000465591 A0A0G2JS52 829 aa30.76■■■□□ 2.51
LIME1-203ENST00000465591 MYT1Q01538 1121 aa30.76■■■□□ 2.51
LIME1-203ENST00000465591 TMC1Q8TDI8 760 aa30.76■■■□□ 2.51
LIME1-203ENST00000465591 TTC21AQ8NDW8 1320 aa30.75■■■□□ 2.51
LIME1-203ENST00000465591 COL18A1P39060 1754 aa30.75■■■□□ 2.51
LIME1-203ENST00000465591 KRT27Q7Z3Y8 459 aa30.75■■■□□ 2.51
LIME1-203ENST00000465591 USP47Q96K76 1375 aa30.74■■■□□ 2.51
LIME1-203ENST00000465591 LARP1Q6PKG0 1096 aaKnown RBP30.73■■■□□ 2.51
LIME1-203ENST00000465591 PUS7Q96PZ0 661 aaKnown RBP30.73■■■□□ 2.51
LIME1-203ENST00000465591 ZRANB1Q9UGI0 708 aa30.73■■■□□ 2.51
LIME1-203ENST00000465591 ZBTB7CA1YPR0 619 aa30.72■■■□□ 2.51
LIME1-203ENST00000465591 COL5A2P05997 1499 aaPredicted RBP30.71■■■□□ 2.51
LIME1-203ENST00000465591 EVA1CP58658 441 aa30.71■■■□□ 2.51
LIME1-203ENST00000465591 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.71■■■□□ 2.51
LIME1-203ENST00000465591 TIMELESSQ9UNS1 1208 aa30.71■■■□□ 2.51
LIME1-203ENST00000465591 A0A1W2PP64 1363 aa30.69■■■□□ 2.5
LIME1-203ENST00000465591 AATKQ6ZMQ8 1374 aa30.69■■■□□ 2.5
LIME1-203ENST00000465591 USP54Q70EL1 1684 aa30.69■■■□□ 2.5
LIME1-203ENST00000465591 USP35Q9P2H5 1018 aa30.69■■■□□ 2.5
LIME1-203ENST00000465591 NFAT5O94916 1531 aa30.68■■■□□ 2.5
LIME1-203ENST00000465591 SOX12O15370 315 aa30.68■■■□□ 2.5
LIME1-203ENST00000465591 RGPD5Q99666 1765 aa30.68■■■□□ 2.5
LIME1-203ENST00000465591 BLMP54132 1417 aaPredicted RBP30.67■■■□□ 2.5
LIME1-203ENST00000465591 NME9Q86XW9 330 aa30.67■■■□□ 2.5
LIME1-203ENST00000465591 CCDC125Q86Z20 511 aa30.67■■■□□ 2.5
LIME1-203ENST00000465591 FAM182BQ5T319 152 aa30.66■■■□□ 2.5
LIME1-203ENST00000465591 HDGFL2Q7Z4V5 671 aaPredicted RBP30.66■■■□□ 2.5
LIME1-203ENST00000465591 USP31Q70CQ4 1352 aa30.66■■■□□ 2.5
LIME1-203ENST00000465591 ARHGEF25Q86VW2 580 aa30.65■■■□□ 2.5
LIME1-203ENST00000465591 AXIN2Q9Y2T1 843 aa30.65■■■□□ 2.5
LIME1-203ENST00000465591 EDC4Q6P2E9 1401 aaKnown RBP30.64■■■□□ 2.5
LIME1-203ENST00000465591 KCNH5Q8NCM2 988 aa30.63■■■□□ 2.49
LIME1-203ENST00000465591 TERF2IPQ9NYB0 399 aa30.63■■■□□ 2.49
LIME1-203ENST00000465591 BARGINQ6ZT62 677 aa30.62■■■□□ 2.49
LIME1-203ENST00000465591 CCER1Q8TC90 406 aaPredicted RBP30.62■■■□□ 2.49
LIME1-203ENST00000465591 CRB1P82279 1406 aa30.6■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms