RNA–Protein interactions for RNA: ENST00000462322.2

SMKR1-201, Transcript of small lysine rich protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMKR1, Length 1,035 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1-201ENST00000462322 TRPC5Q9UL62 973 aaPredicted RBP34■■■■□ 3.03
SMKR1-201ENST00000462322 CABP1Q9NZU7 370 aa33.98■■■■□ 3.03
SMKR1-201ENST00000462322 ABCA3Q99758 1704 aa33.97■■■■□ 3.03
SMKR1-201ENST00000462322 BCL9LQ86UU0 1499 aa33.96■■■■□ 3.03
SMKR1-201ENST00000462322 SBNO2Q9Y2G9 1366 aa33.95■■■■□ 3.02
SMKR1-201ENST00000462322 CDK12Q9NYV4 1490 aaPredicted RBP33.95■■■■□ 3.02
SMKR1-201ENST00000462322 TIMELESSQ9UNS1 1208 aa33.93■■■■□ 3.02
SMKR1-201ENST00000462322 ATRNO75882 1429 aa33.93■■■■□ 3.02
SMKR1-201ENST00000462322 CCER1Q8TC90 406 aaPredicted RBP33.92■■■■□ 3.02
SMKR1-201ENST00000462322 SLIT2O94813 1529 aa33.92■■■■□ 3.02
SMKR1-201ENST00000462322 NUTM2GQ5VZR2 741 aa33.91■■■■□ 3.02
SMKR1-201ENST00000462322 UNC5CLQ8IV45 518 aa33.9■■■■□ 3.02
SMKR1-201ENST00000462322 ATAD2Q6PL18 1390 aa33.88■■■■□ 3.01
SMKR1-201ENST00000462322 FAM83GA6ND36 823 aa33.88■■■■□ 3.01
SMKR1-201ENST00000462322 ABTB2Q8N961 1025 aa33.88■■■■□ 3.01
SMKR1-201ENST00000462322 RGS12O14924 1447 aa33.86■■■■□ 3.01
SMKR1-201ENST00000462322 BRD4O60885 1362 aaPredicted RBP33.85■■■■□ 3.01
SMKR1-201ENST00000462322 TNKS1BP1Q9C0C2 1729 aaKnown RBP33.84■■■■□ 3.01
SMKR1-201ENST00000462322 USP6P35125 1406 aa33.84■■■■□ 3.01
SMKR1-201ENST00000462322 CRYBG1Q9Y4K1 1723 aa33.84■■■■□ 3.01
SMKR1-201ENST00000462322 ST20-MTHFSA0A0A6YYL1 179 aa33.83■■■■□ 3.01
SMKR1-201ENST00000462322 GJD4Q96KN9 370 aaPredicted RBP33.83■■■■□ 3.01
SMKR1-201ENST00000462322 PLCH1Q4KWH8 1693 aa33.83■■■■□ 3.01
SMKR1-201ENST00000462322 NWD2Q9ULI1 1742 aa33.8■■■■□ 3
SMKR1-201ENST00000462322 ZNF692Q9BU19 519 aaPredicted RBP33.8■■■■□ 3
SMKR1-201ENST00000462322 PRDM11Q9NQV5 511 aa33.8■■■■□ 3
SMKR1-201ENST00000462322 NLRP13Q86W25 1043 aa33.79■■■■□ 3
SMKR1-201ENST00000462322 BTG4Q9NY30 223 aa33.78■■■■□ 3
SMKR1-201ENST00000462322 TESK2Q96S53 571 aa33.77■■■■□ 3
SMKR1-201ENST00000462322 PHRF1Q9P1Y6 1649 aaKnown RBP33.77■■■■□ 3
SMKR1-201ENST00000462322 COL14A1Q05707 1796 aaKnown RBP33.77■■■■□ 3
SMKR1-201ENST00000462322 ZC3H6P61129 1189 aaKnown RBP33.76■■■□□ 2.99
SMKR1-201ENST00000462322 VPS72Q15906 364 aa33.76■■■□□ 2.99
SMKR1-201ENST00000462322 CCDC9Q9Y3X0 531 aaKnown RBP33.76■■■□□ 2.99
SMKR1-201ENST00000462322 KIAA0232Q92628 1395 aa33.75■■■□□ 2.99
SMKR1-201ENST00000462322 USP47Q96K76 1375 aa33.75■■■□□ 2.99
SMKR1-201ENST00000462322 TMC1Q8TDI8 760 aa33.75■■■□□ 2.99
SMKR1-201ENST00000462322 USP19O94966 1318 aa33.75■■■□□ 2.99
SMKR1-201ENST00000462322 SSH2Q76I76 1423 aa33.74■■■□□ 2.99
SMKR1-201ENST00000462322 SLC24A1O60721 1099 aa33.74■■■□□ 2.99
SMKR1-201ENST00000462322 NLRP6P59044 892 aa33.73■■■□□ 2.99
SMKR1-201ENST00000462322 CPSF1Q10570 1443 aaKnown RBP33.72■■■□□ 2.99
SMKR1-201ENST00000462322 PUS7Q96PZ0 661 aaKnown RBP33.72■■■□□ 2.99
SMKR1-201ENST00000462322 AKAP12Q02952 1782 aa33.72■■■□□ 2.99
SMKR1-201ENST00000462322 KTN1Q86UP2 1357 aaKnown RBP33.72■■■□□ 2.99
SMKR1-201ENST00000462322 CHRNA2Q15822 529 aa33.71■■■□□ 2.99
SMKR1-201ENST00000462322 GLI3P10071 1580 aa33.71■■■□□ 2.99
SMKR1-201ENST00000462322 TTC21BQ7Z4L5 1316 aa33.71■■■□□ 2.99
SMKR1-201ENST00000462322 GCP02774 474 aa33.69■■■□□ 2.98
SMKR1-201ENST00000462322 SLC12A5Q9H2X9 1139 aa33.69■■■□□ 2.98
SMKR1-201ENST00000462322 NRKQ7Z2Y5 1582 aa33.68■■■□□ 2.98
SMKR1-201ENST00000462322 NRAPQ86VF7 1730 aa33.67■■■□□ 2.98
SMKR1-201ENST00000462322 UPF1Q92900 1129 aaKnown RBP eCLIP33.67■■■□□ 2.98
SMKR1-201ENST00000462322 HDGFL2Q7Z4V5 671 aaPredicted RBP33.66■■■□□ 2.98
SMKR1-201ENST00000462322 TTC21AQ8NDW8 1320 aa33.66■■■□□ 2.98
SMKR1-201ENST00000462322 PIK3C2AO00443 1686 aa33.65■■■□□ 2.98
SMKR1-201ENST00000462322 CPDO75976 1380 aa33.63■■■□□ 2.97
SMKR1-201ENST00000462322 TMF1P82094 1093 aa33.63■■■□□ 2.97
SMKR1-201ENST00000462322 TERF2IPQ9NYB0 399 aa33.63■■■□□ 2.97
SMKR1-201ENST00000462322 CD163L1Q9NR16 1453 aa33.63■■■□□ 2.97
SMKR1-201ENST00000462322 MON2Q7Z3U7 1717 aa33.62■■■□□ 2.97
SMKR1-201ENST00000462322 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.61■■■□□ 2.97
SMKR1-201ENST00000462322 STRN4Q9NRL3 753 aa33.6■■■□□ 2.97
SMKR1-201ENST00000462322 SEPT12Q8IYM1 358 aa33.59■■■□□ 2.97
SMKR1-201ENST00000462322 NINLQ9Y2I6 1382 aa33.59■■■□□ 2.97
SMKR1-201ENST00000462322 SLIT3O75094 1523 aa33.58■■■□□ 2.97
SMKR1-201ENST00000462322 ZBTB7CA1YPR0 619 aa33.58■■■□□ 2.97
SMKR1-201ENST00000462322 SPATA31A5Q5VU36 1347 aa33.57■■■□□ 2.97
SMKR1-201ENST00000462322 SPATA31A7Q8IWB4 1347 aa33.57■■■□□ 2.97
SMKR1-201ENST00000462322 ONECUT3O60422 494 aaPredicted RBP33.57■■■□□ 2.96
SMKR1-201ENST00000462322 EVA1CP58658 441 aa33.57■■■□□ 2.96
SMKR1-201ENST00000462322 A0A1W2PP64 1363 aa33.56■■■□□ 2.96
SMKR1-201ENST00000462322 A0A0G2JS52 829 aa33.55■■■□□ 2.96
SMKR1-201ENST00000462322 MYT1Q01538 1121 aa33.55■■■□□ 2.96
SMKR1-201ENST00000462322 FAM98CQ17RN3 349 aaKnown RBP33.55■■■□□ 2.96
SMKR1-201ENST00000462322 KCNH5Q8NCM2 988 aa33.54■■■□□ 2.96
SMKR1-201ENST00000462322 EDC4Q6P2E9 1401 aaKnown RBP33.53■■■□□ 2.96
SMKR1-201ENST00000462322 CAMTA1Q9Y6Y1 1673 aa33.53■■■□□ 2.96
SMKR1-201ENST00000462322 SOX12O15370 315 aa33.53■■■□□ 2.96
SMKR1-201ENST00000462322 CDCA8Q53HL2 280 aa33.53■■■□□ 2.96
SMKR1-201ENST00000462322 NME9Q86XW9 330 aa33.52■■■□□ 2.96
SMKR1-201ENST00000462322 ZRANB1Q9UGI0 708 aa33.52■■■□□ 2.96
SMKR1-201ENST00000462322 LMO7Q8WWI1 1683 aa33.52■■■□□ 2.96
SMKR1-201ENST00000462322 SPATA31A1Q5TZJ5 1347 aa33.5■■■□□ 2.95
SMKR1-201ENST00000462322 BRWD3Q6RI45 1802 aa33.49■■■□□ 2.95
SMKR1-201ENST00000462322 AATKQ6ZMQ8 1374 aa33.48■■■□□ 2.95
SMKR1-201ENST00000462322 USP31Q70CQ4 1352 aa33.48■■■□□ 2.95
SMKR1-201ENST00000462322 LARP1Q6PKG0 1096 aaKnown RBP33.47■■■□□ 2.95
SMKR1-201ENST00000462322 ARHGEF25Q86VW2 580 aa33.46■■■□□ 2.95
SMKR1-201ENST00000462322 USP35Q9P2H5 1018 aa33.46■■■□□ 2.95
SMKR1-201ENST00000462322 KRT27Q7Z3Y8 459 aa33.45■■■□□ 2.95
SMKR1-201ENST00000462322 ANKRD36BQ8N2N9 1353 aa33.44■■■□□ 2.94
SMKR1-201ENST00000462322 COL5A2P05997 1499 aaPredicted RBP33.44■■■□□ 2.94
SMKR1-201ENST00000462322 EIF4G2P78344 907 aaKnown RBP eCLIP33.43■■■□□ 2.94
SMKR1-201ENST00000462322 NFAT5O94916 1531 aa33.42■■■□□ 2.94
SMKR1-201ENST00000462322 USP54Q70EL1 1684 aa33.4■■■□□ 2.94
SMKR1-201ENST00000462322 AXIN2Q9Y2T1 843 aa33.4■■■□□ 2.94
SMKR1-201ENST00000462322 EP400Q96L91 3159 aa33.4■■■□□ 2.94
SMKR1-201ENST00000462322 COL18A1P39060 1754 aa33.39■■■□□ 2.94
SMKR1-201ENST00000462322 HSPA5P11021 654 aaKnown RBP33.38■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms