RNA–Protein interactions for RNA: ENST00000461798.5

BRCA1-207, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-207ENST00000461798 KCNA4P22459 653 aa13.24□□□□□ -0.29
BRCA1-207ENST00000461798 NUDT16Q96DE0 195 aaKnown RBP13.24□□□□□ -0.29
BRCA1-207ENST00000461798 GJD4Q96KN9 370 aaPredicted RBP13.24□□□□□ -0.29
BRCA1-207ENST00000461798 RGPD8O14715 1765 aaPredicted RBP13.23□□□□□ -0.29
BRCA1-207ENST00000461798 KIAA1210Q9ULL0 1709 aa13.23□□□□□ -0.29
BRCA1-207ENST00000461798 CABLES1Q8TDN4 633 aa13.23□□□□□ -0.29
BRCA1-207ENST00000461798 CDK19Q9BWU1 502 aa13.23□□□□□ -0.29
BRCA1-207ENST00000461798 NGDNQ8NEJ9 315 aaKnown RBP13.22□□□□□ -0.29
BRCA1-207ENST00000461798 SIN3AQ96ST3 1273 aa13.22□□□□□ -0.29
BRCA1-207ENST00000461798 CCDC61Q9Y6R9 512 aa13.22□□□□□ -0.29
BRCA1-207ENST00000461798 PLEKHG3A1L390 1219 aa13.21□□□□□ -0.29
BRCA1-207ENST00000461798 HAP1P54257 671 aaPredicted RBP13.21□□□□□ -0.29
BRCA1-207ENST00000461798 LMOD2Q6P5Q4 547 aa13.21□□□□□ -0.29
BRCA1-207ENST00000461798 ARHGEF28Q8N1W1 1705 aaKnown RBP13.2□□□□□ -0.3
BRCA1-207ENST00000461798 FAM83GA6ND36 823 aa13.2□□□□□ -0.3
BRCA1-207ENST00000461798 HAX1O00165 279 aa13.2□□□□□ -0.3
BRCA1-207ENST00000461798 VPS72Q15906 364 aa13.2□□□□□ -0.3
BRCA1-207ENST00000461798 ATP7BP35670 1465 aa13.2□□□□□ -0.3
BRCA1-207ENST00000461798 MARF1Q9Y4F3 1742 aaKnown RBP13.19□□□□□ -0.3
BRCA1-207ENST00000461798 CENPJQ9HC77 1338 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-207ENST00000461798 ONECUT3O60422 494 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-207ENST00000461798 POLR3AO14802 1390 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-207ENST00000461798 ATAD2Q6PL18 1390 aa13.19□□□□□ -0.3
BRCA1-207ENST00000461798 NBPF8Q3BBV2 869 aa13.18□□□□□ -0.3
BRCA1-207ENST00000461798 RALGAPBQ86X10 1494 aa13.17□□□□□ -0.3
BRCA1-207ENST00000461798 TRPM3Q9HCF6 1732 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-207ENST00000461798 REM2Q8IYK8 340 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-207ENST00000461798 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.16□□□□□ -0.3
BRCA1-207ENST00000461798 ACEP12821 1306 aa13.16□□□□□ -0.3
BRCA1-207ENST00000461798 NEUROD1Q13562 356 aa13.16□□□□□ -0.3
BRCA1-207ENST00000461798 PAK3O75914 559 aaPredicted RBP13.15□□□□□ -0.3
BRCA1-207ENST00000461798 CCDC125Q86Z20 511 aa13.15□□□□□ -0.3
BRCA1-207ENST00000461798 ALS2Q96Q42 1657 aa13.15□□□□□ -0.31
BRCA1-207ENST00000461798 PLEKHG5O94827 1062 aa13.14□□□□□ -0.31
BRCA1-207ENST00000461798 GLI3P10071 1580 aa13.14□□□□□ -0.31
BRCA1-207ENST00000461798 BRD4O60885 1362 aaPredicted RBP13.13□□□□□ -0.31
BRCA1-207ENST00000461798 SRPK2P78362 688 aaKnown RBP13.13□□□□□ -0.31
BRCA1-207ENST00000461798 CABP2Q9NPB3 220 aa13.13□□□□□ -0.31
BRCA1-207ENST00000461798 BTG4Q9NY30 223 aa13.13□□□□□ -0.31
BRCA1-207ENST00000461798 SEPT12Q8IYM1 358 aa13.12□□□□□ -0.31
BRCA1-207ENST00000461798 ITSN1Q15811 1721 aa13.12□□□□□ -0.31
BRCA1-207ENST00000461798 NWD2Q9ULI1 1742 aa13.12□□□□□ -0.31
BRCA1-207ENST00000461798 ABCA3Q99758 1704 aa13.11□□□□□ -0.31
BRCA1-207ENST00000461798 TRIM26Q12899 539 aaPredicted RBP13.11□□□□□ -0.31
BRCA1-207ENST00000461798 PRDM11Q9NQV5 511 aa13.11□□□□□ -0.31
BRCA1-207ENST00000461798 CABP1Q9NZU7 370 aa13.11□□□□□ -0.31
BRCA1-207ENST00000461798 EVC2Q86UK5 1308 aa13.11□□□□□ -0.31
BRCA1-207ENST00000461798 ROCK2O75116 1388 aaKnown RBP13.1□□□□□ -0.31
BRCA1-207ENST00000461798 TOPAZ1Q8N9V7 1692 aa13.1□□□□□ -0.31
BRCA1-207ENST00000461798 ABTB2Q8N961 1025 aa13.1□□□□□ -0.31
BRCA1-207ENST00000461798 CCDC9Q9Y3X0 531 aaKnown RBP13.1□□□□□ -0.31
BRCA1-207ENST00000461798 PPIP5K1Q6PFW1 1433 aa13.1□□□□□ -0.31
BRCA1-207ENST00000461798 MYCNP04198 464 aaPredicted RBP13.09□□□□□ -0.31
BRCA1-207ENST00000461798 FXR2P51116 673 aaKnown RBP eCLIP13.09□□□□□ -0.31
BRCA1-207ENST00000461798 NLRP13Q86W25 1043 aa13.09□□□□□ -0.31
BRCA1-207ENST00000461798 TRPM1Q7Z4N2 1603 aa13.09□□□□□ -0.31
BRCA1-207ENST00000461798 USP19O94966 1318 aa13.09□□□□□ -0.31
BRCA1-207ENST00000461798 SPATA31A5Q5VU36 1347 aa13.09□□□□□ -0.31
BRCA1-207ENST00000461798 SPATA31A7Q8IWB4 1347 aa13.09□□□□□ -0.31
BRCA1-207ENST00000461798 KIAA0232Q92628 1395 aa13.08□□□□□ -0.31
BRCA1-207ENST00000461798 COL14A1Q05707 1796 aaKnown RBP13.08□□□□□ -0.32
BRCA1-207ENST00000461798 NUTM2GQ5VZR2 741 aa13.08□□□□□ -0.32
BRCA1-207ENST00000461798 PLCH1Q4KWH8 1693 aa13.08□□□□□ -0.32
BRCA1-207ENST00000461798 CPDO75976 1380 aa13.07□□□□□ -0.32
BRCA1-207ENST00000461798 ZC3H6P61129 1189 aaKnown RBP13.07□□□□□ -0.32
BRCA1-207ENST00000461798 KRT27Q7Z3Y8 459 aa13.07□□□□□ -0.32
BRCA1-207ENST00000461798 ZNF692Q9BU19 519 aaPredicted RBP13.07□□□□□ -0.32
BRCA1-207ENST00000461798 CRYBG1Q9Y4K1 1723 aa13.07□□□□□ -0.32
BRCA1-207ENST00000461798 SSH2Q76I76 1423 aa13.06□□□□□ -0.32
BRCA1-207ENST00000461798 PITPNM1O00562 1244 aa13.06□□□□□ -0.32
BRCA1-207ENST00000461798 GCP02774 474 aa13.06□□□□□ -0.32
BRCA1-207ENST00000461798 CHRNA2Q15822 529 aa13.06□□□□□ -0.32
BRCA1-207ENST00000461798 FAM98CQ17RN3 349 aaKnown RBP13.06□□□□□ -0.32
BRCA1-207ENST00000461798 SBNO2Q9Y2G9 1366 aa13.06□□□□□ -0.32
BRCA1-207ENST00000461798 USP6P35125 1406 aa13.05□□□□□ -0.32
BRCA1-207ENST00000461798 BLMP54132 1417 aaPredicted RBP13.05□□□□□ -0.32
BRCA1-207ENST00000461798 NRAPQ86VF7 1730 aa13.05□□□□□ -0.32
BRCA1-207ENST00000461798 EVX2Q03828 476 aa13.05□□□□□ -0.32
BRCA1-207ENST00000461798 SPATA31A1Q5TZJ5 1347 aa13.05□□□□□ -0.32
BRCA1-207ENST00000461798 CARD11Q9BXL7 1154 aa13.04□□□□□ -0.32
BRCA1-207ENST00000461798 QRICH2Q9H0J4 1663 aa13.04□□□□□ -0.32
BRCA1-207ENST00000461798 TONSLQ96HA7 1378 aa13.04□□□□□ -0.32
BRCA1-207ENST00000461798 NLRP6P59044 892 aa13.03□□□□□ -0.32
BRCA1-207ENST00000461798 EVA1CP58658 441 aa13.02□□□□□ -0.33
BRCA1-207ENST00000461798 BARGINQ6ZT62 677 aa13.02□□□□□ -0.33
BRCA1-207ENST00000461798 PUS7Q96PZ0 661 aaKnown RBP13.02□□□□□ -0.33
BRCA1-207ENST00000461798 CPSF1Q10570 1443 aaKnown RBP13.02□□□□□ -0.33
BRCA1-207ENST00000461798 STRN4Q9NRL3 753 aa13.01□□□□□ -0.33
BRCA1-207ENST00000461798 ZRANB1Q9UGI0 708 aa13.01□□□□□ -0.33
BRCA1-207ENST00000461798 TTC21BQ7Z4L5 1316 aa13.01□□□□□ -0.33
BRCA1-207ENST00000461798 PHRF1Q9P1Y6 1649 aaKnown RBP13.01□□□□□ -0.33
BRCA1-207ENST00000461798 BRWD3Q6RI45 1802 aa13□□□□□ -0.33
BRCA1-207ENST00000461798 CAMTA1Q9Y6Y1 1673 aa13□□□□□ -0.33
BRCA1-207ENST00000461798 NRKQ7Z2Y5 1582 aa13□□□□□ -0.33
BRCA1-207ENST00000461798 AATKQ6ZMQ8 1374 aa13□□□□□ -0.33
BRCA1-207ENST00000461798 TTC21AQ8NDW8 1320 aa13□□□□□ -0.33
BRCA1-207ENST00000461798 A0A0G2JS52 829 aa13□□□□□ -0.33
BRCA1-207ENST00000461798 MYT1Q01538 1121 aa13□□□□□ -0.33
BRCA1-207ENST00000461798 SF3B2Q13435 895 aaKnown RBP13□□□□□ -0.33
BRCA1-207ENST00000461798 LARP1Q6PKG0 1096 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms