RNA–Protein interactions for RNA: ENST00000456948.5

CBX3-204, Transcript of chromobox 3, humanhuman

TSL 5

Gene CBX3, Length 1,068 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-204ENST00000456948 ATAD2Q6PL18 1390 aa32.66■■■□□ 2.82
CBX3-204ENST00000456948 RBM6P78332 1123 aaKnown RBP32.65■■■□□ 2.82
CBX3-204ENST00000456948 BRD4O60885 1362 aaPredicted RBP32.64■■■□□ 2.82
CBX3-204ENST00000456948 CABLES1Q8TDN4 633 aa32.64■■■□□ 2.82
CBX3-204ENST00000456948 TRPM3Q9HCF6 1732 aaPredicted RBP32.63■■■□□ 2.81
CBX3-204ENST00000456948 ZNF692Q9BU19 519 aaPredicted RBP32.62■■■□□ 2.81
CBX3-204ENST00000456948 TRPC5Q9UL62 973 aaPredicted RBP32.62■■■□□ 2.81
CBX3-204ENST00000456948 MARF1Q9Y4F3 1742 aaKnown RBP32.61■■■□□ 2.81
CBX3-204ENST00000456948 ABTB2Q8N961 1025 aa32.6■■■□□ 2.81
CBX3-204ENST00000456948 ST20-MTHFSA0A0A6YYL1 179 aa32.59■■■□□ 2.81
CBX3-204ENST00000456948 CDK12Q9NYV4 1490 aaPredicted RBP32.59■■■□□ 2.81
CBX3-204ENST00000456948 ALS2Q96Q42 1657 aa32.58■■■□□ 2.81
CBX3-204ENST00000456948 PUS7Q96PZ0 661 aaKnown RBP32.57■■■□□ 2.8
CBX3-204ENST00000456948 NLRP13Q86W25 1043 aa32.54■■■□□ 2.8
CBX3-204ENST00000456948 UNC5CLQ8IV45 518 aa32.53■■■□□ 2.8
CBX3-204ENST00000456948 USP47Q96K76 1375 aa32.53■■■□□ 2.8
CBX3-204ENST00000456948 RGS12O14924 1447 aa32.52■■■□□ 2.8
CBX3-204ENST00000456948 TMC1Q8TDI8 760 aa32.52■■■□□ 2.8
CBX3-204ENST00000456948 NUTM2GQ5VZR2 741 aa32.5■■■□□ 2.79
CBX3-204ENST00000456948 ATRNO75882 1429 aa32.5■■■□□ 2.79
CBX3-204ENST00000456948 USP6P35125 1406 aa32.5■■■□□ 2.79
CBX3-204ENST00000456948 BCL9LQ86UU0 1499 aa32.49■■■□□ 2.79
CBX3-204ENST00000456948 TMF1P82094 1093 aa32.49■■■□□ 2.79
CBX3-204ENST00000456948 UPF1Q92900 1129 aaKnown RBP eCLIP32.48■■■□□ 2.79
CBX3-204ENST00000456948 TESK2Q96S53 571 aa32.48■■■□□ 2.79
CBX3-204ENST00000456948 FAM83GA6ND36 823 aa32.47■■■□□ 2.79
CBX3-204ENST00000456948 CDCA8Q53HL2 280 aa32.47■■■□□ 2.79
CBX3-204ENST00000456948 HDGFL2Q7Z4V5 671 aaPredicted RBP32.47■■■□□ 2.79
CBX3-204ENST00000456948 PRDM11Q9NQV5 511 aa32.46■■■□□ 2.79
CBX3-204ENST00000456948 TERF2IPQ9NYB0 399 aa32.46■■■□□ 2.79
CBX3-204ENST00000456948 SLIT2O94813 1529 aa32.46■■■□□ 2.79
CBX3-204ENST00000456948 ABCA3Q99758 1704 aa32.46■■■□□ 2.79
CBX3-204ENST00000456948 KTN1Q86UP2 1357 aaKnown RBP32.45■■■□□ 2.78
CBX3-204ENST00000456948 NLRP6P59044 892 aa32.44■■■□□ 2.78
CBX3-204ENST00000456948 GJD4Q96KN9 370 aaPredicted RBP32.43■■■□□ 2.78
CBX3-204ENST00000456948 TTC21AQ8NDW8 1320 aa32.43■■■□□ 2.78
CBX3-204ENST00000456948 NINLQ9Y2I6 1382 aa32.42■■■□□ 2.78
CBX3-204ENST00000456948 CCDC9Q9Y3X0 531 aaKnown RBP32.41■■■□□ 2.78
CBX3-204ENST00000456948 BTG4Q9NY30 223 aa32.4■■■□□ 2.78
CBX3-204ENST00000456948 TTC21BQ7Z4L5 1316 aa32.4■■■□□ 2.78
CBX3-204ENST00000456948 CPSF1Q10570 1443 aaKnown RBP32.4■■■□□ 2.78
CBX3-204ENST00000456948 TNKS1BP1Q9C0C2 1729 aaKnown RBP32.4■■■□□ 2.78
CBX3-204ENST00000456948 ZC3H6P61129 1189 aaKnown RBP32.39■■■□□ 2.78
CBX3-204ENST00000456948 SLC12A5Q9H2X9 1139 aa32.39■■■□□ 2.78
CBX3-204ENST00000456948 NWD2Q9ULI1 1742 aa32.39■■■□□ 2.78
CBX3-204ENST00000456948 VPS72Q15906 364 aa32.38■■■□□ 2.77
CBX3-204ENST00000456948 COL14A1Q05707 1796 aaKnown RBP32.37■■■□□ 2.77
CBX3-204ENST00000456948 SSH2Q76I76 1423 aa32.37■■■□□ 2.77
CBX3-204ENST00000456948 USP19O94966 1318 aa32.37■■■□□ 2.77
CBX3-204ENST00000456948 GCP02774 474 aa32.37■■■□□ 2.77
CBX3-204ENST00000456948 KIAA0232Q92628 1395 aa32.36■■■□□ 2.77
CBX3-204ENST00000456948 AKAP12Q02952 1782 aa32.36■■■□□ 2.77
CBX3-204ENST00000456948 CRYBG1Q9Y4K1 1723 aa32.34■■■□□ 2.77
CBX3-204ENST00000456948 PLCH1Q4KWH8 1693 aa32.34■■■□□ 2.77
CBX3-204ENST00000456948 EIF4G2P78344 907 aaKnown RBP eCLIP32.33■■■□□ 2.77
CBX3-204ENST00000456948 KCNH5Q8NCM2 988 aa32.33■■■□□ 2.77
CBX3-204ENST00000456948 PHRF1Q9P1Y6 1649 aaKnown RBP32.33■■■□□ 2.77
CBX3-204ENST00000456948 SUGP2Q8IX01 1082 aaKnown RBP eCLIP32.31■■■□□ 2.76
CBX3-204ENST00000456948 CPDO75976 1380 aa32.31■■■□□ 2.76
CBX3-204ENST00000456948 EVA1CP58658 441 aa32.3■■■□□ 2.76
CBX3-204ENST00000456948 CHRNA2Q15822 529 aa32.3■■■□□ 2.76
CBX3-204ENST00000456948 GLI3P10071 1580 aa32.27■■■□□ 2.76
CBX3-204ENST00000456948 EDC4Q6P2E9 1401 aaKnown RBP32.26■■■□□ 2.76
CBX3-204ENST00000456948 MON2Q7Z3U7 1717 aa32.26■■■□□ 2.76
CBX3-204ENST00000456948 NRKQ7Z2Y5 1582 aa32.25■■■□□ 2.75
CBX3-204ENST00000456948 A0A1W2PP64 1363 aa32.25■■■□□ 2.75
CBX3-204ENST00000456948 CD163L1Q9NR16 1453 aa32.24■■■□□ 2.75
CBX3-204ENST00000456948 ZBTB7CA1YPR0 619 aa32.24■■■□□ 2.75
CBX3-204ENST00000456948 STRN4Q9NRL3 753 aa32.24■■■□□ 2.75
CBX3-204ENST00000456948 PIK3C2AO00443 1686 aa32.24■■■□□ 2.75
CBX3-204ENST00000456948 A0A0G2JS52 829 aa32.21■■■□□ 2.75
CBX3-204ENST00000456948 MYT1Q01538 1121 aa32.21■■■□□ 2.75
CBX3-204ENST00000456948 SLIT3O75094 1523 aa32.21■■■□□ 2.75
CBX3-204ENST00000456948 ANKRD36BQ8N2N9 1353 aa32.2■■■□□ 2.75
CBX3-204ENST00000456948 USP31Q70CQ4 1352 aa32.19■■■□□ 2.74
CBX3-204ENST00000456948 ONECUT3O60422 494 aaPredicted RBP32.19■■■□□ 2.74
CBX3-204ENST00000456948 SEPT12Q8IYM1 358 aa32.19■■■□□ 2.74
CBX3-204ENST00000456948 NRAPQ86VF7 1730 aa32.19■■■□□ 2.74
CBX3-204ENST00000456948 SPATA31A5Q5VU36 1347 aa32.19■■■□□ 2.74
CBX3-204ENST00000456948 SPATA31A7Q8IWB4 1347 aa32.19■■■□□ 2.74
CBX3-204ENST00000456948 SOX12O15370 315 aa32.18■■■□□ 2.74
CBX3-204ENST00000456948 HSPA5P11021 654 aaKnown RBP32.18■■■□□ 2.74
CBX3-204ENST00000456948 NME9Q86XW9 330 aa32.18■■■□□ 2.74
CBX3-204ENST00000456948 AATKQ6ZMQ8 1374 aa32.17■■■□□ 2.74
CBX3-204ENST00000456948 FAM98CQ17RN3 349 aaKnown RBP32.15■■■□□ 2.74
CBX3-204ENST00000456948 ARHGEF25Q86VW2 580 aa32.14■■■□□ 2.74
CBX3-204ENST00000456948 POLR3GLQ9BT43 218 aa32.14■■■□□ 2.74
CBX3-204ENST00000456948 BRWD3Q6RI45 1802 aa32.14■■■□□ 2.74
CBX3-204ENST00000456948 COG3Q96JB2 828 aa32.13■■■□□ 2.73
CBX3-204ENST00000456948 SPATA31A1Q5TZJ5 1347 aa32.12■■■□□ 2.73
CBX3-204ENST00000456948 ZRANB1Q9UGI0 708 aa32.11■■■□□ 2.73
CBX3-204ENST00000456948 CAMTA1Q9Y6Y1 1673 aa32.11■■■□□ 2.73
CBX3-204ENST00000456948 USP35Q9P2H5 1018 aa32.09■■■□□ 2.73
CBX3-204ENST00000456948 LARP1Q6PKG0 1096 aaKnown RBP32.08■■■□□ 2.73
CBX3-204ENST00000456948 KRT27Q7Z3Y8 459 aa32.08■■■□□ 2.73
CBX3-204ENST00000456948 THRAP3Q9Y2W1 955 aaKnown RBP32.07■■■□□ 2.72
CBX3-204ENST00000456948 EP400Q96L91 3159 aa32.07■■■□□ 2.72
CBX3-204ENST00000456948 LMO7Q8WWI1 1683 aa32.07■■■□□ 2.72
CBX3-204ENST00000456948 CCDC125Q86Z20 511 aa32.06■■■□□ 2.72
CBX3-204ENST00000456948 TCP11L2Q8N4U5 519 aa32.06■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms