RNA–Protein interactions for RNA: ENST00000454428.5

UBE2D4-209, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 3

Gene UBE2D4, Length 288 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-209ENST00000454428 SPATA31A7Q8IWB4 1347 aa25.75■■□□□ 1.71
UBE2D4-209ENST00000454428 R3HDM1Q15032 1099 aaKnown RBP25.75■■□□□ 1.71
UBE2D4-209ENST00000454428 PRR36Q9H6K5 1346 aa25.71■■□□□ 1.71
UBE2D4-209ENST00000454428 ADGRB1O14514 1584 aa25.7■■□□□ 1.71
UBE2D4-209ENST00000454428 EZH2Q15910 746 aaKnown RBP25.69■■□□□ 1.7
UBE2D4-209ENST00000454428 ACIN1Q9UKV3 1341 aaKnown RBP25.68■■□□□ 1.7
UBE2D4-209ENST00000454428 CAMKK2Q96RR4 588 aa25.66■■□□□ 1.7
UBE2D4-209ENST00000454428 HIRIP3Q9BW71 556 aaPredicted RBP25.66■■□□□ 1.7
UBE2D4-209ENST00000454428 POGKQ9P215 609 aa25.66■■□□□ 1.7
UBE2D4-209ENST00000454428 TULP4Q9NRJ4 1543 aa25.66■■□□□ 1.7
UBE2D4-209ENST00000454428 GPRASP1Q5JY77 1395 aa25.65■■□□□ 1.7
UBE2D4-209ENST00000454428 SPATA31A1Q5TZJ5 1347 aa25.63■■□□□ 1.69
UBE2D4-209ENST00000454428 RREB1Q92766 1687 aa25.61■■□□□ 1.69
UBE2D4-209ENST00000454428 TRIM37O94972 964 aa25.61■■□□□ 1.69
UBE2D4-209ENST00000454428 MINK1Q8N4C8 1332 aaPredicted RBP25.61■■□□□ 1.69
UBE2D4-209ENST00000454428 PHRF1Q9P1Y6 1649 aaKnown RBP25.6■■□□□ 1.69
UBE2D4-209ENST00000454428 PRDM11Q9NQV5 511 aa25.6■■□□□ 1.69
UBE2D4-209ENST00000454428 TRAK1Q9UPV9 953 aa25.6■■□□□ 1.69
UBE2D4-209ENST00000454428 KIAA0232Q92628 1395 aa25.58■■□□□ 1.69
UBE2D4-209ENST00000454428 NUP188Q5SRE5 1749 aa25.58■■□□□ 1.69
UBE2D4-209ENST00000454428 WASLO00401 505 aaPredicted RBP25.58■■□□□ 1.69
UBE2D4-209ENST00000454428 EIF3AQ14152 1382 aaKnown RBP25.57■■□□□ 1.68
UBE2D4-209ENST00000454428 FAM196AQ6ZSG2 479 aa25.57■■□□□ 1.68
UBE2D4-209ENST00000454428 CHRNA2Q15822 529 aa25.56■■□□□ 1.68
UBE2D4-209ENST00000454428 PARD3Q8TEW0 1356 aa25.56■■□□□ 1.68
UBE2D4-209ENST00000454428 PAK3O75914 559 aaPredicted RBP25.55■■□□□ 1.68
UBE2D4-209ENST00000454428 NGDNQ8NEJ9 315 aaKnown RBP25.55■■□□□ 1.68
UBE2D4-209ENST00000454428 APBA3O96018 575 aa25.54■■□□□ 1.68
UBE2D4-209ENST00000454428 ATP7BP35670 1465 aa25.53■■□□□ 1.68
UBE2D4-209ENST00000454428 ITSN1Q15811 1721 aa25.52■■□□□ 1.68
UBE2D4-209ENST00000454428 STRN4Q9NRL3 753 aa25.52■■□□□ 1.68
UBE2D4-209ENST00000454428 ARHGEF28Q8N1W1 1705 aaKnown RBP25.49■■□□□ 1.67
UBE2D4-209ENST00000454428 SSH2Q76I76 1423 aa25.49■■□□□ 1.67
UBE2D4-209ENST00000454428 ZC3H6P61129 1189 aaKnown RBP25.49■■□□□ 1.67
UBE2D4-209ENST00000454428 BARGINQ6ZT62 677 aa25.48■■□□□ 1.67
UBE2D4-209ENST00000454428 CAMTA1Q9Y6Y1 1673 aa25.48■■□□□ 1.67
UBE2D4-209ENST00000454428 NRKQ7Z2Y5 1582 aa25.48■■□□□ 1.67
UBE2D4-209ENST00000454428 UTRNP46939 3433 aa25.47■■□□□ 1.67
UBE2D4-209ENST00000454428 YY1P25490 414 aa25.47■■□□□ 1.67
UBE2D4-209ENST00000454428 USP35Q9P2H5 1018 aa25.47■■□□□ 1.67
UBE2D4-209ENST00000454428 LMO7Q8WWI1 1683 aa25.47■■□□□ 1.67
UBE2D4-209ENST00000454428 NUTM2GQ5VZR2 741 aa25.46■■□□□ 1.67
UBE2D4-209ENST00000454428 NUDT16Q96DE0 195 aaKnown RBP25.46■■□□□ 1.67
UBE2D4-209ENST00000454428 TOPAZ1Q8N9V7 1692 aa25.45■■□□□ 1.67
UBE2D4-209ENST00000454428 LARP1Q6PKG0 1096 aaKnown RBP25.43■■□□□ 1.66
UBE2D4-209ENST00000454428 POLR3AO14802 1390 aaPredicted RBP25.43■■□□□ 1.66
UBE2D4-209ENST00000454428 PDE3BQ13370 1112 aa25.42■■□□□ 1.66
UBE2D4-209ENST00000454428 KDM2AQ9Y2K7 1162 aa25.41■■□□□ 1.66
UBE2D4-209ENST00000454428 PARP4Q9UKK3 1724 aaKnown RBP25.4■■□□□ 1.66
UBE2D4-209ENST00000454428 EVA1CP58658 441 aa25.39■■□□□ 1.66
UBE2D4-209ENST00000454428 NBPF8Q3BBV2 869 aa25.39■■□□□ 1.66
UBE2D4-209ENST00000454428 NBPF14Q5TI25 921 aa25.39■■□□□ 1.66
UBE2D4-209ENST00000454428 TCP11L2Q8N4U5 519 aa25.39■■□□□ 1.66
UBE2D4-209ENST00000454428 DCAF11Q8TEB1 546 aa25.39■■□□□ 1.66
UBE2D4-209ENST00000454428 PEAK1Q9H792 1746 aa25.39■■□□□ 1.65
UBE2D4-209ENST00000454428 CPDO75976 1380 aa25.39■■□□□ 1.65
UBE2D4-209ENST00000454428 ACEP12821 1306 aa25.37■■□□□ 1.65
UBE2D4-209ENST00000454428 USP19O94966 1318 aa25.37■■□□□ 1.65
UBE2D4-209ENST00000454428 KCNQ2O43526 872 aa25.36■■□□□ 1.65
UBE2D4-209ENST00000454428 CDK19Q9BWU1 502 aa25.36■■□□□ 1.65
UBE2D4-209ENST00000454428 SPON1Q9HCB6 807 aa25.36■■□□□ 1.65
UBE2D4-209ENST00000454428 SBF2Q86WG5 1849 aa25.35■■□□□ 1.65
UBE2D4-209ENST00000454428 COL5A2P05997 1499 aaPredicted RBP25.34■■□□□ 1.65
UBE2D4-209ENST00000454428 NINLQ9Y2I6 1382 aa25.34■■□□□ 1.65
UBE2D4-209ENST00000454428 RGPD3A6NKT7 1758 aaPredicted RBP25.34■■□□□ 1.65
UBE2D4-209ENST00000454428 RGPD4Q7Z3J3 1758 aa25.34■■□□□ 1.65
UBE2D4-209ENST00000454428 CASZ1Q86V15 1759 aa25.33■■□□□ 1.65
UBE2D4-209ENST00000454428 RAB3GAP2Q9H2M9 1393 aa25.33■■□□□ 1.65
UBE2D4-209ENST00000454428 PLEKHG3A1L390 1219 aa25.33■■□□□ 1.65
UBE2D4-209ENST00000454428 THRAP3Q9Y2W1 955 aaKnown RBP25.33■■□□□ 1.65
UBE2D4-209ENST00000454428 PPP1R1BQ9UD71 204 aaPredicted RBP25.32■■□□□ 1.64
UBE2D4-209ENST00000454428 CCDC61Q9Y6R9 512 aa25.32■■□□□ 1.64
UBE2D4-209ENST00000454428 ABTB2Q8N961 1025 aa25.31■■□□□ 1.64
UBE2D4-209ENST00000454428 LRRC37A3O60309 1634 aa25.3■■□□□ 1.64
UBE2D4-209ENST00000454428 STAC3Q96MF2 364 aa25.29■■□□□ 1.64
UBE2D4-209ENST00000454428 ANO8Q9HCE9 1232 aaPredicted RBP25.29■■□□□ 1.64
UBE2D4-209ENST00000454428 GCP02774 474 aa25.28■■□□□ 1.64
UBE2D4-209ENST00000454428 PTF1AQ7RTS3 328 aa25.27■■□□□ 1.64
UBE2D4-209ENST00000454428 OVOS2A0A0G2JMS6 1433 aa25.27■■□□□ 1.64
UBE2D4-209ENST00000454428 OVOS2A0A0J9YW53 1432 aa25.27■■□□□ 1.64
UBE2D4-209ENST00000454428 CRB1P82279 1406 aa25.27■■□□□ 1.64
UBE2D4-209ENST00000454428 OVOS2Q6IE36 1432 aa25.27■■□□□ 1.64
UBE2D4-209ENST00000454428 PLSCR1O15162 318 aa25.26■■□□□ 1.63
UBE2D4-209ENST00000454428 PDGFDQ9GZP0 370 aaPredicted RBP25.26■■□□□ 1.63
UBE2D4-209ENST00000454428 C11orf95C9JLR9 678 aaPredicted RBP25.23■■□□□ 1.63
UBE2D4-209ENST00000454428 NLRP13Q86W25 1043 aa25.23■■□□□ 1.63
UBE2D4-209ENST00000454428 WNK3Q9BYP7 1800 aa25.23■■□□□ 1.63
UBE2D4-209ENST00000454428 COL18A1P39060 1754 aa25.23■■□□□ 1.63
UBE2D4-209ENST00000454428 MYOM1P52179 1685 aa25.23■■□□□ 1.63
UBE2D4-209ENST00000454428 PROM2Q8N271 834 aa25.22■■□□□ 1.63
UBE2D4-209ENST00000454428 KIAA1210Q9ULL0 1709 aa25.21■■□□□ 1.63
UBE2D4-209ENST00000454428 SLIT3O75094 1523 aa25.21■■□□□ 1.63
UBE2D4-209ENST00000454428 PPIP5K1Q6PFW1 1433 aa25.2■■□□□ 1.63
UBE2D4-209ENST00000454428 AATKQ6ZMQ8 1374 aa25.19■■□□□ 1.62
UBE2D4-209ENST00000454428 PTGER2P43116 358 aa25.19■■□□□ 1.62
UBE2D4-209ENST00000454428 BCL11BQ9C0K0 894 aaPredicted RBP25.19■■□□□ 1.62
UBE2D4-209ENST00000454428 DCAF8L1A6NGE4 600 aa25.18■■□□□ 1.62
UBE2D4-209ENST00000454428 DDB1Q16531 1140 aa25.17■■□□□ 1.62
UBE2D4-209ENST00000454428 BCL9O00512 1426 aa25.16■■□□□ 1.62
UBE2D4-209ENST00000454428 ZBTB7AO95365 584 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms