RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 SLIT2O94813 1529 aa24.3■■□□□ 1.48
PRPF40A-204ENST00000450303 ROCK2O75116 1388 aaKnown RBP24.3■■□□□ 1.48
PRPF40A-204ENST00000450303 ACEP12821 1306 aa24.3■■□□□ 1.48
PRPF40A-204ENST00000450303 GJD4Q96KN9 370 aaPredicted RBP24.29■■□□□ 1.48
PRPF40A-204ENST00000450303 FAM83GA6ND36 823 aa24.28■■□□□ 1.48
PRPF40A-204ENST00000450303 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.27■■□□□ 1.48
PRPF40A-204ENST00000450303 PLEKHG3A1L390 1219 aa24.27■■□□□ 1.48
PRPF40A-204ENST00000450303 PLCH1Q4KWH8 1693 aa24.27■■□□□ 1.48
PRPF40A-204ENST00000450303 NUTM2GQ5VZR2 741 aa24.26■■□□□ 1.47
PRPF40A-204ENST00000450303 POLR3AO14802 1390 aaPredicted RBP24.25■■□□□ 1.47
PRPF40A-204ENST00000450303 TONSLQ96HA7 1378 aa24.25■■□□□ 1.47
PRPF40A-204ENST00000450303 PPIP5K1Q6PFW1 1433 aa24.24■■□□□ 1.47
PRPF40A-204ENST00000450303 CRYBG1Q9Y4K1 1723 aa24.22■■□□□ 1.47
PRPF40A-204ENST00000450303 RALGAPBQ86X10 1494 aa24.22■■□□□ 1.47
PRPF40A-204ENST00000450303 CCDC9Q9Y3X0 531 aaKnown RBP24.22■■□□□ 1.47
PRPF40A-204ENST00000450303 NWD2Q9ULI1 1742 aa24.21■■□□□ 1.47
PRPF40A-204ENST00000450303 GLI3P10071 1580 aa24.21■■□□□ 1.47
PRPF40A-204ENST00000450303 CABP1Q9NZU7 370 aa24.21■■□□□ 1.47
PRPF40A-204ENST00000450303 EVC2Q86UK5 1308 aa24.2■■□□□ 1.46
PRPF40A-204ENST00000450303 BTG4Q9NY30 223 aa24.2■■□□□ 1.46
PRPF40A-204ENST00000450303 VPS72Q15906 364 aa24.19■■□□□ 1.46
PRPF40A-204ENST00000450303 CARD11Q9BXL7 1154 aa24.19■■□□□ 1.46
PRPF40A-204ENST00000450303 ABTB2Q8N961 1025 aa24.18■■□□□ 1.46
PRPF40A-204ENST00000450303 TIMELESSQ9UNS1 1208 aa24.18■■□□□ 1.46
PRPF40A-204ENST00000450303 COL14A1Q05707 1796 aaKnown RBP24.17■■□□□ 1.46
PRPF40A-204ENST00000450303 ZEB1P37275 1124 aaPredicted RBP24.16■■□□□ 1.46
PRPF40A-204ENST00000450303 ZC3H6P61129 1189 aaKnown RBP24.16■■□□□ 1.46
PRPF40A-204ENST00000450303 PRDM11Q9NQV5 511 aa24.16■■□□□ 1.46
PRPF40A-204ENST00000450303 PHRF1Q9P1Y6 1649 aaKnown RBP24.16■■□□□ 1.46
PRPF40A-204ENST00000450303 ATAD2Q6PL18 1390 aa24.16■■□□□ 1.46
PRPF40A-204ENST00000450303 CHRNA2Q15822 529 aa24.15■■□□□ 1.46
PRPF40A-204ENST00000450303 NRAPQ86VF7 1730 aa24.15■■□□□ 1.46
PRPF40A-204ENST00000450303 KIAA0232Q92628 1395 aa24.14■■□□□ 1.45
PRPF40A-204ENST00000450303 BRWD3Q6RI45 1802 aa24.13■■□□□ 1.45
PRPF40A-204ENST00000450303 SEPT12Q8IYM1 358 aa24.12■■□□□ 1.45
PRPF40A-204ENST00000450303 USP6P35125 1406 aa24.1■■□□□ 1.45
PRPF40A-204ENST00000450303 NLRP13Q86W25 1043 aa24.09■■□□□ 1.45
PRPF40A-204ENST00000450303 A0A0G2JS52 829 aa24.08■■□□□ 1.45
PRPF40A-204ENST00000450303 MYT1Q01538 1121 aa24.08■■□□□ 1.45
PRPF40A-204ENST00000450303 ONECUT3O60422 494 aaPredicted RBP24.07■■□□□ 1.44
PRPF40A-204ENST00000450303 FAM98CQ17RN3 349 aaKnown RBP24.07■■□□□ 1.44
PRPF40A-204ENST00000450303 STRN4Q9NRL3 753 aa24.07■■□□□ 1.44
PRPF40A-204ENST00000450303 NLRP6P59044 892 aa24.06■■□□□ 1.44
PRPF40A-204ENST00000450303 NRKQ7Z2Y5 1582 aa24.06■■□□□ 1.44
PRPF40A-204ENST00000450303 USP19O94966 1318 aa24.06■■□□□ 1.44
PRPF40A-204ENST00000450303 SPATA31A5Q5VU36 1347 aa24.05■■□□□ 1.44
PRPF40A-204ENST00000450303 SPATA31A7Q8IWB4 1347 aa24.05■■□□□ 1.44
PRPF40A-204ENST00000450303 BRD4O60885 1362 aaPredicted RBP24.04■■□□□ 1.44
PRPF40A-204ENST00000450303 ZBTB7CA1YPR0 619 aa24.04■■□□□ 1.44
PRPF40A-204ENST00000450303 GCP02774 474 aa24.04■■□□□ 1.44
PRPF40A-204ENST00000450303 AKAP12Q02952 1782 aa24.03■■□□□ 1.44
PRPF40A-204ENST00000450303 ZNF692Q9BU19 519 aaPredicted RBP24.03■■□□□ 1.44
PRPF40A-204ENST00000450303 SBNO2Q9Y2G9 1366 aa24.03■■□□□ 1.44
PRPF40A-204ENST00000450303 SSH2Q76I76 1423 aa24.02■■□□□ 1.44
PRPF40A-204ENST00000450303 EVA1CP58658 441 aa24.02■■□□□ 1.44
PRPF40A-204ENST00000450303 KRT27Q7Z3Y8 459 aa24.01■■□□□ 1.43
PRPF40A-204ENST00000450303 TTC21BQ7Z4L5 1316 aa24.01■■□□□ 1.43
PRPF40A-204ENST00000450303 PIK3C2AO00443 1686 aa24.01■■□□□ 1.43
PRPF40A-204ENST00000450303 TMC1Q8TDI8 760 aa24■■□□□ 1.43
PRPF40A-204ENST00000450303 CAMTA1Q9Y6Y1 1673 aa23.99■■□□□ 1.43
PRPF40A-204ENST00000450303 USP35Q9P2H5 1018 aa23.99■■□□□ 1.43
PRPF40A-204ENST00000450303 CPDO75976 1380 aa23.99■■□□□ 1.43
PRPF40A-204ENST00000450303 KTN1Q86UP2 1357 aaKnown RBP23.99■■□□□ 1.43
PRPF40A-204ENST00000450303 ST20-MTHFSA0A0A6YYL1 179 aa23.98■■□□□ 1.43
PRPF40A-204ENST00000450303 SPATA31A1Q5TZJ5 1347 aa23.98■■□□□ 1.43
PRPF40A-204ENST00000450303 CPSF1Q10570 1443 aaKnown RBP23.97■■□□□ 1.43
PRPF40A-204ENST00000450303 SLC12A5Q9H2X9 1139 aa23.97■■□□□ 1.43
PRPF40A-204ENST00000450303 SOX12O15370 315 aa23.96■■□□□ 1.43
PRPF40A-204ENST00000450303 LARP1Q6PKG0 1096 aaKnown RBP23.96■■□□□ 1.43
PRPF40A-204ENST00000450303 CCDC125Q86Z20 511 aa23.96■■□□□ 1.43
PRPF40A-204ENST00000450303 LMO7Q8WWI1 1683 aa23.95■■□□□ 1.43
PRPF40A-204ENST00000450303 EP400Q96L91 3159 aa23.95■■□□□ 1.43
PRPF40A-204ENST00000450303 SLIT3O75094 1523 aa23.95■■□□□ 1.43
PRPF40A-204ENST00000450303 FAM182BQ5T319 152 aa23.95■■□□□ 1.42
PRPF40A-204ENST00000450303 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.95■■□□□ 1.42
PRPF40A-204ENST00000450303 MON2Q7Z3U7 1717 aa23.94■■□□□ 1.42
PRPF40A-204ENST00000450303 TESK2Q96S53 571 aa23.94■■□□□ 1.42
PRPF40A-204ENST00000450303 ZRANB1Q9UGI0 708 aa23.94■■□□□ 1.42
PRPF40A-204ENST00000450303 TTC21AQ8NDW8 1320 aa23.93■■□□□ 1.42
PRPF40A-204ENST00000450303 CD163L1Q9NR16 1453 aa23.92■■□□□ 1.42
PRPF40A-204ENST00000450303 THSD7AQ9UPZ6 1657 aa23.92■■□□□ 1.42
PRPF40A-204ENST00000450303 BLMP54132 1417 aaPredicted RBP23.92■■□□□ 1.42
PRPF40A-204ENST00000450303 DEFB132Q7Z7B7 95 aa23.91■■□□□ 1.42
PRPF40A-204ENST00000450303 HDGFL2Q7Z4V5 671 aaPredicted RBP23.9■■□□□ 1.42
PRPF40A-204ENST00000450303 SF3B2Q13435 895 aaKnown RBP23.89■■□□□ 1.41
PRPF40A-204ENST00000450303 NME9Q86XW9 330 aa23.89■■□□□ 1.41
PRPF40A-204ENST00000450303 COL5A2P05997 1499 aaPredicted RBP23.88■■□□□ 1.41
PRPF40A-204ENST00000450303 KCNH5Q8NCM2 988 aa23.88■■□□□ 1.41
PRPF40A-204ENST00000450303 AATKQ6ZMQ8 1374 aa23.88■■□□□ 1.41
PRPF40A-204ENST00000450303 COL18A1P39060 1754 aa23.88■■□□□ 1.41
PRPF40A-204ENST00000450303 TCP11L2Q8N4U5 519 aa23.87■■□□□ 1.41
PRPF40A-204ENST00000450303 PUS7Q96PZ0 661 aaKnown RBP23.87■■□□□ 1.41
PRPF40A-204ENST00000450303 AXIN2Q9Y2T1 843 aa23.87■■□□□ 1.41
PRPF40A-204ENST00000450303 USP47Q96K76 1375 aa23.87■■□□□ 1.41
PRPF40A-204ENST00000450303 RGPD5Q99666 1765 aa23.86■■□□□ 1.41
PRPF40A-204ENST00000450303 ARHGEF25Q86VW2 580 aa23.86■■□□□ 1.41
PRPF40A-204ENST00000450303 TERF2IPQ9NYB0 399 aa23.86■■□□□ 1.41
PRPF40A-204ENST00000450303 BARGINQ6ZT62 677 aa23.85■■□□□ 1.41
PRPF40A-204ENST00000450303 A0A1W2PP64 1363 aa23.85■■□□□ 1.41
PRPF40A-204ENST00000450303 USP31Q70CQ4 1352 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms