RNA–Protein interactions for RNA: ENST00000443727.1

LRCH3-208, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 4

Gene LRCH3, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-208ENST00000443727 POLR3AO14802 1390 aaPredicted RBP28.62■■■□□ 2.17
LRCH3-208ENST00000443727 ALS2Q96Q42 1657 aa28.62■■■□□ 2.17
LRCH3-208ENST00000443727 EVC2Q86UK5 1308 aa28.62■■■□□ 2.17
LRCH3-208ENST00000443727 PPIP5K1Q6PFW1 1433 aa28.61■■■□□ 2.17
LRCH3-208ENST00000443727 ABCA3Q99758 1704 aa28.61■■■□□ 2.17
LRCH3-208ENST00000443727 FAM83GA6ND36 823 aa28.61■■■□□ 2.17
LRCH3-208ENST00000443727 TOPAZ1Q8N9V7 1692 aa28.61■■■□□ 2.17
LRCH3-208ENST00000443727 CCDC9Q9Y3X0 531 aaKnown RBP28.6■■■□□ 2.17
LRCH3-208ENST00000443727 NUTM2GQ5VZR2 741 aa28.58■■■□□ 2.17
LRCH3-208ENST00000443727 CARD11Q9BXL7 1154 aa28.58■■■□□ 2.17
LRCH3-208ENST00000443727 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.57■■■□□ 2.16
LRCH3-208ENST00000443727 VPS72Q15906 364 aa28.56■■■□□ 2.16
LRCH3-208ENST00000443727 RALGAPBQ86X10 1494 aa28.56■■■□□ 2.16
LRCH3-208ENST00000443727 CABP1Q9NZU7 370 aa28.56■■■□□ 2.16
LRCH3-208ENST00000443727 ATAD2Q6PL18 1390 aa28.55■■■□□ 2.16
LRCH3-208ENST00000443727 ABTB2Q8N961 1025 aa28.55■■■□□ 2.16
LRCH3-208ENST00000443727 PRDM11Q9NQV5 511 aa28.55■■■□□ 2.16
LRCH3-208ENST00000443727 BTG4Q9NY30 223 aa28.54■■■□□ 2.16
LRCH3-208ENST00000443727 PLCH1Q4KWH8 1693 aa28.54■■■□□ 2.16
LRCH3-208ENST00000443727 NWD2Q9ULI1 1742 aa28.52■■■□□ 2.16
LRCH3-208ENST00000443727 GLI3P10071 1580 aa28.49■■■□□ 2.15
LRCH3-208ENST00000443727 COL14A1Q05707 1796 aaKnown RBP28.48■■■□□ 2.15
LRCH3-208ENST00000443727 ZC3H6P61129 1189 aaKnown RBP28.48■■■□□ 2.15
LRCH3-208ENST00000443727 KIAA0232Q92628 1395 aa28.47■■■□□ 2.15
LRCH3-208ENST00000443727 NLRP13Q86W25 1043 aa28.46■■■□□ 2.15
LRCH3-208ENST00000443727 BRD4O60885 1362 aaPredicted RBP28.46■■■□□ 2.15
LRCH3-208ENST00000443727 A0A0G2JS52 829 aa28.45■■■□□ 2.14
LRCH3-208ENST00000443727 MYT1Q01538 1121 aa28.45■■■□□ 2.14
LRCH3-208ENST00000443727 CHRNA2Q15822 529 aa28.45■■■□□ 2.14
LRCH3-208ENST00000443727 SEPT12Q8IYM1 358 aa28.45■■■□□ 2.14
LRCH3-208ENST00000443727 CRYBG1Q9Y4K1 1723 aa28.45■■■□□ 2.14
LRCH3-208ENST00000443727 USP6P35125 1406 aa28.43■■■□□ 2.14
LRCH3-208ENST00000443727 PCGF6Q9BYE7 350 aa28.42■■■□□ 2.14
LRCH3-208ENST00000443727 SBNO2Q9Y2G9 1366 aa28.41■■■□□ 2.14
LRCH3-208ENST00000443727 PHRF1Q9P1Y6 1649 aaKnown RBP28.41■■■□□ 2.14
LRCH3-208ENST00000443727 NLRP6P59044 892 aa28.4■■■□□ 2.14
LRCH3-208ENST00000443727 ZNF692Q9BU19 519 aaPredicted RBP28.4■■■□□ 2.14
LRCH3-208ENST00000443727 USP19O94966 1318 aa28.4■■■□□ 2.14
LRCH3-208ENST00000443727 FAM98CQ17RN3 349 aaKnown RBP28.39■■■□□ 2.14
LRCH3-208ENST00000443727 NRAPQ86VF7 1730 aa28.39■■■□□ 2.14
LRCH3-208ENST00000443727 STRN4Q9NRL3 753 aa28.39■■■□□ 2.14
LRCH3-208ENST00000443727 ONECUT3O60422 494 aaPredicted RBP28.38■■■□□ 2.13
LRCH3-208ENST00000443727 GCP02774 474 aa28.38■■■□□ 2.13
LRCH3-208ENST00000443727 EVA1CP58658 441 aa28.37■■■□□ 2.13
LRCH3-208ENST00000443727 SPATA31A5Q5VU36 1347 aa28.36■■■□□ 2.13
LRCH3-208ENST00000443727 SPATA31A7Q8IWB4 1347 aa28.36■■■□□ 2.13
LRCH3-208ENST00000443727 TMC1Q8TDI8 760 aa28.35■■■□□ 2.13
LRCH3-208ENST00000443727 NRKQ7Z2Y5 1582 aa28.35■■■□□ 2.13
LRCH3-208ENST00000443727 ZBTB7CA1YPR0 619 aa28.34■■■□□ 2.13
LRCH3-208ENST00000443727 KRT27Q7Z3Y8 459 aa28.34■■■□□ 2.13
LRCH3-208ENST00000443727 CCDC125Q86Z20 511 aa28.34■■■□□ 2.13
LRCH3-208ENST00000443727 CPDO75976 1380 aa28.34■■■□□ 2.13
LRCH3-208ENST00000443727 KTN1Q86UP2 1357 aaKnown RBP28.33■■■□□ 2.13
LRCH3-208ENST00000443727 TTC21BQ7Z4L5 1316 aa28.32■■■□□ 2.12
LRCH3-208ENST00000443727 SSH2Q76I76 1423 aa28.32■■■□□ 2.12
LRCH3-208ENST00000443727 TTC21AQ8NDW8 1320 aa28.3■■■□□ 2.12
LRCH3-208ENST00000443727 ST20-MTHFSA0A0A6YYL1 179 aa28.3■■■□□ 2.12
LRCH3-208ENST00000443727 SPATA31A1Q5TZJ5 1347 aa28.29■■■□□ 2.12
LRCH3-208ENST00000443727 BRWD3Q6RI45 1802 aa28.29■■■□□ 2.12
LRCH3-208ENST00000443727 CPSF1Q10570 1443 aaKnown RBP28.28■■■□□ 2.12
LRCH3-208ENST00000443727 USP35Q9P2H5 1018 aa28.28■■■□□ 2.12
LRCH3-208ENST00000443727 CLSPNQ9HAW4 1339 aa28.27■■■□□ 2.12
LRCH3-208ENST00000443727 SLC24A1O60721 1099 aa28.27■■■□□ 2.12
LRCH3-208ENST00000443727 HDGFL2Q7Z4V5 671 aaPredicted RBP28.27■■■□□ 2.12
LRCH3-208ENST00000443727 EP400Q96L91 3159 aa28.26■■■□□ 2.11
LRCH3-208ENST00000443727 SF3B2Q13435 895 aaKnown RBP28.26■■■□□ 2.11
LRCH3-208ENST00000443727 AKAP12Q02952 1782 aa28.26■■■□□ 2.11
LRCH3-208ENST00000443727 PIK3C2AO00443 1686 aa28.26■■■□□ 2.11
LRCH3-208ENST00000443727 SOX12O15370 315 aa28.25■■■□□ 2.11
LRCH3-208ENST00000443727 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.25■■■□□ 2.11
LRCH3-208ENST00000443727 SLC12A5Q9H2X9 1139 aa28.25■■■□□ 2.11
LRCH3-208ENST00000443727 TIMELESSQ9UNS1 1208 aa28.25■■■□□ 2.11
LRCH3-208ENST00000443727 CAMTA1Q9Y6Y1 1673 aa28.25■■■□□ 2.11
LRCH3-208ENST00000443727 LARP1Q6PKG0 1096 aaKnown RBP28.24■■■□□ 2.11
LRCH3-208ENST00000443727 KCNH5Q8NCM2 988 aa28.24■■■□□ 2.11
LRCH3-208ENST00000443727 PUS7Q96PZ0 661 aaKnown RBP28.24■■■□□ 2.11
LRCH3-208ENST00000443727 TERF2IPQ9NYB0 399 aa28.24■■■□□ 2.11
LRCH3-208ENST00000443727 BLMP54132 1417 aaPredicted RBP28.24■■■□□ 2.11
LRCH3-208ENST00000443727 SLIT3O75094 1523 aa28.23■■■□□ 2.11
LRCH3-208ENST00000443727 TESK2Q96S53 571 aa28.23■■■□□ 2.11
LRCH3-208ENST00000443727 AATKQ6ZMQ8 1374 aa28.21■■■□□ 2.11
LRCH3-208ENST00000443727 USP47Q96K76 1375 aa28.2■■■□□ 2.1
LRCH3-208ENST00000443727 LMO7Q8WWI1 1683 aa28.19■■■□□ 2.1
LRCH3-208ENST00000443727 TCP11L2Q8N4U5 519 aa28.19■■■□□ 2.1
LRCH3-208ENST00000443727 CCER1Q8TC90 406 aaPredicted RBP28.18■■■□□ 2.1
LRCH3-208ENST00000443727 COL5A2P05997 1499 aaPredicted RBP28.17■■■□□ 2.1
LRCH3-208ENST00000443727 CD163L1Q9NR16 1453 aa28.17■■■□□ 2.1
LRCH3-208ENST00000443727 FAM182BQ5T319 152 aa28.17■■■□□ 2.1
LRCH3-208ENST00000443727 BARGINQ6ZT62 677 aa28.17■■■□□ 2.1
LRCH3-208ENST00000443727 MON2Q7Z3U7 1717 aa28.17■■■□□ 2.1
LRCH3-208ENST00000443727 THSD7AQ9UPZ6 1657 aa28.16■■■□□ 2.1
LRCH3-208ENST00000443727 TMF1P82094 1093 aa28.16■■■□□ 2.1
LRCH3-208ENST00000443727 NME9Q86XW9 330 aa28.16■■■□□ 2.1
LRCH3-208ENST00000443727 ARHGEF25Q86VW2 580 aa28.15■■■□□ 2.1
LRCH3-208ENST00000443727 ZRANB1Q9UGI0 708 aa28.15■■■□□ 2.1
LRCH3-208ENST00000443727 A0A1W2PP64 1363 aa28.14■■■□□ 2.1
LRCH3-208ENST00000443727 NINLQ9Y2I6 1382 aa28.14■■■□□ 2.1
LRCH3-208ENST00000443727 THRAP3Q9Y2W1 955 aaKnown RBP28.14■■■□□ 2.1
LRCH3-208ENST00000443727 EDC4Q6P2E9 1401 aaKnown RBP28.14■■■□□ 2.1
LRCH3-208ENST00000443727 PDE3BQ13370 1112 aa28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 157.3 ms