RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 POTEAQ6S8J7 498 aa32.18■■■□□ 2.74
SMARCB1-205ENST00000417137 HDGFL2Q7Z4V5 671 aaPredicted RBP32.18■■■□□ 2.74
SMARCB1-205ENST00000417137 TERF2IPQ9NYB0 399 aa32.18■■■□□ 2.74
SMARCB1-205ENST00000417137 HAP1P54257 671 aaPredicted RBP32.15■■■□□ 2.74
SMARCB1-205ENST00000417137 USP6P35125 1406 aa32.15■■■□□ 2.74
SMARCB1-205ENST00000417137 COL22A1Q8NFW1 1626 aaPredicted RBP32.14■■■□□ 2.74
SMARCB1-205ENST00000417137 CPSF1Q10570 1443 aaKnown RBP32.13■■■□□ 2.73
SMARCB1-205ENST00000417137 KTN1Q86UP2 1357 aaKnown RBP32.13■■■□□ 2.73
SMARCB1-205ENST00000417137 ABTB2Q8N961 1025 aa32.13■■■□□ 2.73
SMARCB1-205ENST00000417137 TRPM3Q9HCF6 1732 aaPredicted RBP32.13■■■□□ 2.73
SMARCB1-205ENST00000417137 LRP6O75581 1613 aa32.11■■■□□ 2.73
SMARCB1-205ENST00000417137 ADAMTS2O95450 1211 aa32.11■■■□□ 2.73
SMARCB1-205ENST00000417137 PLEKHG5O94827 1062 aa32.1■■■□□ 2.73
SMARCB1-205ENST00000417137 ZEB1P37275 1124 aaPredicted RBP32.09■■■□□ 2.73
SMARCB1-205ENST00000417137 NLRP13Q86W25 1043 aa32.08■■■□□ 2.73
SMARCB1-205ENST00000417137 CABLES1Q8TDN4 633 aa32.08■■■□□ 2.73
SMARCB1-205ENST00000417137 TTC21BQ7Z4L5 1316 aa32.07■■■□□ 2.72
SMARCB1-205ENST00000417137 TTC21AQ8NDW8 1320 aa32.07■■■□□ 2.72
SMARCB1-205ENST00000417137 POLR3GLQ9BT43 218 aa32.06■■■□□ 2.72
SMARCB1-205ENST00000417137 SSH2Q76I76 1423 aa32.06■■■□□ 2.72
SMARCB1-205ENST00000417137 ALS2Q96Q42 1657 aa32.05■■■□□ 2.72
SMARCB1-205ENST00000417137 NUTM2GQ5VZR2 741 aa32.05■■■□□ 2.72
SMARCB1-205ENST00000417137 C8orf37Q96NL8 207 aa32.05■■■□□ 2.72
SMARCB1-205ENST00000417137 NGLY1Q96IV0 654 aa32.04■■■□□ 2.72
SMARCB1-205ENST00000417137 CD163L1Q9NR16 1453 aa32.03■■■□□ 2.72
SMARCB1-205ENST00000417137 NLRP6P59044 892 aa32.03■■■□□ 2.72
SMARCB1-205ENST00000417137 A0A1W2PP64 1363 aa32.03■■■□□ 2.72
SMARCB1-205ENST00000417137 ANKRD36BQ8N2N9 1353 aa32.02■■■□□ 2.72
SMARCB1-205ENST00000417137 AKAP12Q02952 1782 aa32■■■□□ 2.71
SMARCB1-205ENST00000417137 SUGP2Q8IX01 1082 aaKnown RBP eCLIP32■■■□□ 2.717e-7■■□□□ 13.6
SMARCB1-205ENST00000417137 EDC4Q6P2E9 1401 aaKnown RBP32■■■□□ 2.71
SMARCB1-205ENST00000417137 ZNF772Q68DY9 489 aaPredicted RBP31.99■■■□□ 2.71
SMARCB1-205ENST00000417137 AFF2P51816 1311 aa31.97■■■□□ 2.71
SMARCB1-205ENST00000417137 C11orf95C9JLR9 678 aaPredicted RBP31.95■■■□□ 2.71
SMARCB1-205ENST00000417137 USP19O94966 1318 aa31.95■■■□□ 2.7
SMARCB1-205ENST00000417137 FNBP4Q8N3X1 1017 aaPredicted RBP31.94■■■□□ 2.7
SMARCB1-205ENST00000417137 MON2Q7Z3U7 1717 aa31.92■■■□□ 2.7
SMARCB1-205ENST00000417137 GCP02774 474 aa31.92■■■□□ 2.7
SMARCB1-205ENST00000417137 NME9Q86XW9 330 aa31.9■■■□□ 2.7
SMARCB1-205ENST00000417137 USP21Q9UK80 565 aa31.9■■■□□ 2.7
SMARCB1-205ENST00000417137 FAM83GA6ND36 823 aa31.89■■■□□ 2.7
SMARCB1-205ENST00000417137 KCNH5Q8NCM2 988 aa31.89■■■□□ 2.7
SMARCB1-205ENST00000417137 PRDM11Q9NQV5 511 aa31.89■■■□□ 2.7
SMARCB1-205ENST00000417137 KIF7Q2M1P5 1343 aa31.89■■■□□ 2.7
SMARCB1-205ENST00000417137 ZC3H6P61129 1189 aaKnown RBP31.88■■■□□ 2.69
SMARCB1-205ENST00000417137 USP31Q70CQ4 1352 aa31.88■■■□□ 2.69
SMARCB1-205ENST00000417137 NRKQ7Z2Y5 1582 aa31.88■■■□□ 2.69
SMARCB1-205ENST00000417137 ABCA3Q99758 1704 aa31.85■■■□□ 2.69
SMARCB1-205ENST00000417137 PIK3C2AO00443 1686 aa31.85■■■□□ 2.69
SMARCB1-205ENST00000417137 CARD14Q9BXL6 1004 aa31.84■■■□□ 2.69
SMARCB1-205ENST00000417137 QTRT2Q9H974 415 aaKnown RBP31.84■■■□□ 2.69
SMARCB1-205ENST00000417137 MARF1Q9Y4F3 1742 aaKnown RBP31.83■■■□□ 2.69
SMARCB1-205ENST00000417137 KIAA0232Q92628 1395 aa31.83■■■□□ 2.69
SMARCB1-205ENST00000417137 COG3Q96JB2 828 aa31.83■■■□□ 2.69
SMARCB1-205ENST00000417137 PANK3Q9H999 370 aa31.83■■■□□ 2.69
SMARCB1-205ENST00000417137 ZRANB1Q9UGI0 708 aa31.83■■■□□ 2.69
SMARCB1-205ENST00000417137 UNC5CLQ8IV45 518 aa31.82■■■□□ 2.68
SMARCB1-205ENST00000417137 TRPC5Q9UL62 973 aaPredicted RBP31.82■■■□□ 2.68
SMARCB1-205ENST00000417137 MYOM1P52179 1685 aa31.82■■■□□ 2.68
SMARCB1-205ENST00000417137 CPDO75976 1380 aa31.81■■■□□ 2.68
SMARCB1-205ENST00000417137 CRYBG1Q9Y4K1 1723 aa31.81■■■□□ 2.68
SMARCB1-205ENST00000417137 SLIT2O94813 1529 aa31.8■■■□□ 2.68
SMARCB1-205ENST00000417137 PHRF1Q9P1Y6 1649 aaKnown RBP31.8■■■□□ 2.68
SMARCB1-205ENST00000417137 FYB1O15117 783 aa31.8■■■□□ 2.68
SMARCB1-205ENST00000417137 SLIT3O75094 1523 aa31.8■■■□□ 2.68
SMARCB1-205ENST00000417137 NSD3Q9BZ95 1437 aa31.79■■■□□ 2.68
SMARCB1-205ENST00000417137 BTG4Q9NY30 223 aa31.79■■■□□ 2.68
SMARCB1-205ENST00000417137 CCDC7Q96M83 1385 aa31.79■■■□□ 2.68
SMARCB1-205ENST00000417137 SOX12O15370 315 aa31.78■■■□□ 2.68
SMARCB1-205ENST00000417137 CHRNA2Q15822 529 aa31.78■■■□□ 2.68
SMARCB1-205ENST00000417137 BCL9LQ86UU0 1499 aa31.78■■■□□ 2.68
SMARCB1-205ENST00000417137 CGNL1Q0VF96 1302 aa31.77■■■□□ 2.68
SMARCB1-205ENST00000417137 RXRBP28702 533 aa31.77■■■□□ 2.68
SMARCB1-205ENST00000417137 WASHC2AQ641Q2 1341 aa31.76■■■□□ 2.68
SMARCB1-205ENST00000417137 ZBTB7CA1YPR0 619 aa31.75■■■□□ 2.67
SMARCB1-205ENST00000417137 GGNBP2Q9H3C7 697 aa31.75■■■□□ 2.67
SMARCB1-205ENST00000417137 COL14A1Q05707 1796 aaKnown RBP31.74■■■□□ 2.67
SMARCB1-205ENST00000417137 OVOS2A0A0J9YW53 1432 aa31.74■■■□□ 2.67
SMARCB1-205ENST00000417137 OVOS2Q6IE36 1432 aa31.74■■■□□ 2.67
SMARCB1-205ENST00000417137 RBM6P78332 1123 aaKnown RBP31.73■■■□□ 2.67
SMARCB1-205ENST00000417137 ARHGEF25Q86VW2 580 aa31.73■■■□□ 2.67
SMARCB1-205ENST00000417137 EVA1CP58658 441 aa31.71■■■□□ 2.67
SMARCB1-205ENST00000417137 KNSTRNQ9Y448 316 aa31.71■■■□□ 2.67
SMARCB1-205ENST00000417137 AATKQ6ZMQ8 1374 aa31.7■■■□□ 2.67
SMARCB1-205ENST00000417137 ATRNO75882 1429 aa31.7■■■□□ 2.67
SMARCB1-205ENST00000417137 VPS72Q15906 364 aa31.7■■■□□ 2.67
SMARCB1-205ENST00000417137 UPF1Q92900 1129 aaKnown RBP eCLIP31.7■■■□□ 2.67
SMARCB1-205ENST00000417137 CCDC9Q9Y3X0 531 aaKnown RBP31.69■■■□□ 2.66
SMARCB1-205ENST00000417137 USP54Q70EL1 1684 aa31.69■■■□□ 2.66
SMARCB1-205ENST00000417137 GJD4Q96KN9 370 aaPredicted RBP31.68■■■□□ 2.66
SMARCB1-205ENST00000417137 NWD2Q9ULI1 1742 aa31.68■■■□□ 2.66
SMARCB1-205ENST00000417137 CDK12Q9NYV4 1490 aaPredicted RBP31.67■■■□□ 2.66
SMARCB1-205ENST00000417137 STRN4Q9NRL3 753 aa31.66■■■□□ 2.66
SMARCB1-205ENST00000417137 PLCH1Q4KWH8 1693 aa31.66■■■□□ 2.66
SMARCB1-205ENST00000417137 NFAT5O94916 1531 aa31.65■■■□□ 2.66
SMARCB1-205ENST00000417137 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.63■■■□□ 2.65
SMARCB1-205ENST00000417137 NSD2O96028 1365 aa31.61■■■□□ 2.65
SMARCB1-205ENST00000417137 CAMTA1Q9Y6Y1 1673 aa31.6■■■□□ 2.65
SMARCB1-205ENST00000417137 AXIN2Q9Y2T1 843 aa31.59■■■□□ 2.65
SMARCB1-205ENST00000417137 KIF20BQ96Q89 1820 aa31.58■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 6.1 ms