RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 PPIP5K1Q6PFW1 1433 aa27.26■■□□□ 1.95
SF3A1-202ENST00000411423 PAK3O75914 559 aaPredicted RBP27.25■■□□□ 1.95
SF3A1-202ENST00000411423 TRPC5Q9UL62 973 aaPredicted RBP27.25■■□□□ 1.95
SF3A1-202ENST00000411423 PCGF6Q9BYE7 350 aa27.23■■□□□ 1.95
SF3A1-202ENST00000411423 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.23■■□□□ 1.95
SF3A1-202ENST00000411423 PLCH1Q4KWH8 1693 aa27.23■■□□□ 1.95
SF3A1-202ENST00000411423 HAP1P54257 671 aaPredicted RBP27.22■■□□□ 1.95
SF3A1-202ENST00000411423 CARD11Q9BXL7 1154 aa27.22■■□□□ 1.95
SF3A1-202ENST00000411423 FAM83GA6ND36 823 aa27.21■■□□□ 1.95
SF3A1-202ENST00000411423 UNC5CLQ8IV45 518 aa27.2■■□□□ 1.94
SF3A1-202ENST00000411423 CABP1Q9NZU7 370 aa27.19■■□□□ 1.94
SF3A1-202ENST00000411423 EVC2Q86UK5 1308 aa27.18■■□□□ 1.94
SF3A1-202ENST00000411423 NUTM2GQ5VZR2 741 aa27.18■■□□□ 1.94
SF3A1-202ENST00000411423 GLI3P10071 1580 aa27.18■■□□□ 1.94
SF3A1-202ENST00000411423 PHRF1Q9P1Y6 1649 aaKnown RBP27.17■■□□□ 1.94
SF3A1-202ENST00000411423 NWD2Q9ULI1 1742 aa27.16■■□□□ 1.94
SF3A1-202ENST00000411423 GJD4Q96KN9 370 aaPredicted RBP27.15■■□□□ 1.94
SF3A1-202ENST00000411423 NRAPQ86VF7 1730 aa27.14■■□□□ 1.94
SF3A1-202ENST00000411423 UPF1Q92900 1129 aaKnown RBP eCLIP27.14■■□□□ 1.94
SF3A1-202ENST00000411423 SBNO2Q9Y2G9 1366 aa27.13■■□□□ 1.93
SF3A1-202ENST00000411423 USP6P35125 1406 aa27.12■■□□□ 1.93
SF3A1-202ENST00000411423 SSH2Q76I76 1423 aa27.11■■□□□ 1.93
SF3A1-202ENST00000411423 COL14A1Q05707 1796 aaKnown RBP27.11■■□□□ 1.93
SF3A1-202ENST00000411423 NRKQ7Z2Y5 1582 aa27.09■■□□□ 1.93
SF3A1-202ENST00000411423 ABTB2Q8N961 1025 aa27.09■■□□□ 1.93
SF3A1-202ENST00000411423 VPS72Q15906 364 aa27.08■■□□□ 1.93
SF3A1-202ENST00000411423 BTG4Q9NY30 223 aa27.08■■□□□ 1.93
SF3A1-202ENST00000411423 USP19O94966 1318 aa27.08■■□□□ 1.93
SF3A1-202ENST00000411423 KIAA0232Q92628 1395 aa27.08■■□□□ 1.93
SF3A1-202ENST00000411423 AKAP12Q02952 1782 aa27.07■■□□□ 1.92
SF3A1-202ENST00000411423 ZC3H6P61129 1189 aaKnown RBP27.05■■□□□ 1.92
SF3A1-202ENST00000411423 CHRNA2Q15822 529 aa27.05■■□□□ 1.92
SF3A1-202ENST00000411423 ATAD2Q6PL18 1390 aa27.05■■□□□ 1.92
SF3A1-202ENST00000411423 PIK3C2AO00443 1686 aa27.05■■□□□ 1.92
SF3A1-202ENST00000411423 TESK2Q96S53 571 aa27.04■■□□□ 1.92
SF3A1-202ENST00000411423 CPSF1Q10570 1443 aaKnown RBP27.04■■□□□ 1.92
SF3A1-202ENST00000411423 BRD4O60885 1362 aaPredicted RBP27.03■■□□□ 1.92
SF3A1-202ENST00000411423 PRDM11Q9NQV5 511 aa27.03■■□□□ 1.92
SF3A1-202ENST00000411423 CD163L1Q9NR16 1453 aa27.02■■□□□ 1.92
SF3A1-202ENST00000411423 ST20-MTHFSA0A0A6YYL1 179 aa27.02■■□□□ 1.92
SF3A1-202ENST00000411423 CLSPNQ9HAW4 1339 aa27.01■■□□□ 1.91
SF3A1-202ENST00000411423 CCDC9Q9Y3X0 531 aaKnown RBP27■■□□□ 1.91
SF3A1-202ENST00000411423 EP400Q96L91 3159 aa27■■□□□ 1.91
SF3A1-202ENST00000411423 BRWD3Q6RI45 1802 aa27■■□□□ 1.91
SF3A1-202ENST00000411423 TTC21BQ7Z4L5 1316 aa26.99■■□□□ 1.91
SF3A1-202ENST00000411423 NLRP13Q86W25 1043 aa26.99■■□□□ 1.91
SF3A1-202ENST00000411423 SLIT3O75094 1523 aa26.99■■□□□ 1.91
SF3A1-202ENST00000411423 GCP02774 474 aa26.98■■□□□ 1.91
SF3A1-202ENST00000411423 MON2Q7Z3U7 1717 aa26.98■■□□□ 1.91
SF3A1-202ENST00000411423 LMO7Q8WWI1 1683 aa26.98■■□□□ 1.91
SF3A1-202ENST00000411423 ONECUT3O60422 494 aaPredicted RBP26.97■■□□□ 1.91
SF3A1-202ENST00000411423 CPDO75976 1380 aa26.97■■□□□ 1.91
SF3A1-202ENST00000411423 CAMTA1Q9Y6Y1 1673 aa26.96■■□□□ 1.91
SF3A1-202ENST00000411423 NLRP6P59044 892 aa26.96■■□□□ 1.91
SF3A1-202ENST00000411423 SEPT12Q8IYM1 358 aa26.96■■□□□ 1.91
SF3A1-202ENST00000411423 ZNF692Q9BU19 519 aaPredicted RBP26.96■■□□□ 1.91
SF3A1-202ENST00000411423 SLC12A5Q9H2X9 1139 aa26.96■■□□□ 1.91
SF3A1-202ENST00000411423 KTN1Q86UP2 1357 aaKnown RBP26.95■■□□□ 1.9
SF3A1-202ENST00000411423 USP47Q96K76 1375 aa26.95■■□□□ 1.9
SF3A1-202ENST00000411423 SPATA31A5Q5VU36 1347 aa26.94■■□□□ 1.9
SF3A1-202ENST00000411423 SPATA31A7Q8IWB4 1347 aa26.94■■□□□ 1.9
SF3A1-202ENST00000411423 TIMELESSQ9UNS1 1208 aa26.93■■□□□ 1.9
SF3A1-202ENST00000411423 FAM98CQ17RN3 349 aaKnown RBP26.92■■□□□ 1.9
SF3A1-202ENST00000411423 TMC1Q8TDI8 760 aa26.92■■□□□ 1.9
SF3A1-202ENST00000411423 STRN4Q9NRL3 753 aa26.92■■□□□ 1.9
SF3A1-202ENST00000411423 ZRANB1Q9UGI0 708 aa26.92■■□□□ 1.9
SF3A1-202ENST00000411423 TTC21AQ8NDW8 1320 aa26.9■■□□□ 1.9
SF3A1-202ENST00000411423 CCER1Q8TC90 406 aaPredicted RBP26.89■■□□□ 1.9
SF3A1-202ENST00000411423 PUS7Q96PZ0 661 aaKnown RBP26.89■■□□□ 1.9
SF3A1-202ENST00000411423 SPATA31A1Q5TZJ5 1347 aa26.89■■□□□ 1.89
SF3A1-202ENST00000411423 A0A1W2PP64 1363 aa26.88■■□□□ 1.89
SF3A1-202ENST00000411423 THSD7AQ9UPZ6 1657 aa26.88■■□□□ 1.89
SF3A1-202ENST00000411423 COL18A1P39060 1754 aa26.87■■□□□ 1.89
SF3A1-202ENST00000411423 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.87■■□□□ 1.89
SF3A1-202ENST00000411423 LARP1Q6PKG0 1096 aaKnown RBP26.86■■□□□ 1.89
SF3A1-202ENST00000411423 NFAT5O94916 1531 aa26.85■■□□□ 1.89
SF3A1-202ENST00000411423 ZBTB7CA1YPR0 619 aa26.85■■□□□ 1.89
SF3A1-202ENST00000411423 NME9Q86XW9 330 aa26.85■■□□□ 1.89
SF3A1-202ENST00000411423 COL5A2P05997 1499 aaPredicted RBP26.85■■□□□ 1.89
SF3A1-202ENST00000411423 USP54Q70EL1 1684 aa26.83■■□□□ 1.89
SF3A1-202ENST00000411423 SOX12O15370 315 aa26.83■■□□□ 1.89
SF3A1-202ENST00000411423 AATKQ6ZMQ8 1374 aa26.83■■□□□ 1.88
SF3A1-202ENST00000411423 USP31Q70CQ4 1352 aa26.83■■□□□ 1.88
SF3A1-202ENST00000411423 A0A0G2JS52 829 aa26.82■■□□□ 1.88
SF3A1-202ENST00000411423 MYT1Q01538 1121 aa26.82■■□□□ 1.88
SF3A1-202ENST00000411423 KRT27Q7Z3Y8 459 aa26.82■■□□□ 1.88
SF3A1-202ENST00000411423 HDGFL2Q7Z4V5 671 aaPredicted RBP26.82■■□□□ 1.88
SF3A1-202ENST00000411423 AXIN2Q9Y2T1 843 aa26.82■■□□□ 1.88
SF3A1-202ENST00000411423 EDC4Q6P2E9 1401 aaKnown RBP26.82■■□□□ 1.88
SF3A1-202ENST00000411423 EVA1CP58658 441 aa26.81■■□□□ 1.88
SF3A1-202ENST00000411423 ARHGEF25Q86VW2 580 aa26.81■■□□□ 1.88
SF3A1-202ENST00000411423 USP35Q9P2H5 1018 aa26.81■■□□□ 1.88
SF3A1-202ENST00000411423 FAM182BQ5T319 152 aa26.79■■□□□ 1.88
SF3A1-202ENST00000411423 TMF1P82094 1093 aa26.78■■□□□ 1.88
SF3A1-202ENST00000411423 TERF2IPQ9NYB0 399 aa26.78■■□□□ 1.88
SF3A1-202ENST00000411423 RGPD5Q99666 1765 aa26.77■■□□□ 1.88
SF3A1-202ENST00000411423 NINLQ9Y2I6 1382 aa26.77■■□□□ 1.88
SF3A1-202ENST00000411423 KCNH5Q8NCM2 988 aa26.77■■□□□ 1.88
SF3A1-202ENST00000411423 OVOS2A0A0J9YW53 1432 aa26.75■■□□□ 1.87
SF3A1-202ENST00000411423 OVOS2Q6IE36 1432 aa26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms