RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 CPSF1Q10570 1443 aaKnown RBP27.75■■■□□ 2.03
PDLIM2-207ENST00000409417 ALS2Q96Q42 1657 aa27.74■■■□□ 2.03
PDLIM2-207ENST00000409417 ADAMTS2O95450 1211 aa27.74■■■□□ 2.03
PDLIM2-207ENST00000409417 NINLQ9Y2I6 1382 aa27.73■■■□□ 2.03
PDLIM2-207ENST00000409417 CABLES1Q8TDN4 633 aa27.72■■■□□ 2.03
PDLIM2-207ENST00000409417 SSH2Q76I76 1423 aa27.71■■■□□ 2.03
PDLIM2-207ENST00000409417 TERF2IPQ9NYB0 399 aa27.7■■■□□ 2.03
PDLIM2-207ENST00000409417 RGS17Q9UGC6 210 aaPredicted RBP27.7■■■□□ 2.03
PDLIM2-207ENST00000409417 ABTB2Q8N961 1025 aa27.7■■■□□ 2.02
PDLIM2-207ENST00000409417 C8orf37Q96NL8 207 aa27.7■■■□□ 2.02
PDLIM2-207ENST00000409417 KTN1Q86UP2 1357 aaKnown RBP27.69■■■□□ 2.02
PDLIM2-207ENST00000409417 CD163L1Q9NR16 1453 aa27.69■■■□□ 2.02
PDLIM2-207ENST00000409417 PLEKHG5O94827 1062 aa27.69■■■□□ 2.02
PDLIM2-207ENST00000409417 HAP1P54257 671 aaPredicted RBP27.69■■■□□ 2.02
PDLIM2-207ENST00000409417 HDGFL2Q7Z4V5 671 aaPredicted RBP27.69■■■□□ 2.02
PDLIM2-207ENST00000409417 NUTM2GQ5VZR2 741 aa27.66■■■□□ 2.02
PDLIM2-207ENST00000409417 NGLY1Q96IV0 654 aa27.66■■■□□ 2.02
PDLIM2-207ENST00000409417 TTC21BQ7Z4L5 1316 aa27.66■■■□□ 2.02
PDLIM2-207ENST00000409417 AKAP12Q02952 1782 aa27.65■■■□□ 2.02
PDLIM2-207ENST00000409417 A0A1W2PP64 1363 aa27.65■■■□□ 2.02
PDLIM2-207ENST00000409417 ZNF772Q68DY9 489 aaPredicted RBP27.64■■■□□ 2.01
PDLIM2-207ENST00000409417 NLRP13Q86W25 1043 aa27.64■■■□□ 2.01
PDLIM2-207ENST00000409417 AFF2P51816 1311 aa27.63■■■□□ 2.01
PDLIM2-207ENST00000409417 TTC21AQ8NDW8 1320 aa27.63■■■□□ 2.01
PDLIM2-207ENST00000409417 FNBP4Q8N3X1 1017 aaPredicted RBP27.61■■■□□ 2.01
PDLIM2-207ENST00000409417 NLRP6P59044 892 aa27.6■■■□□ 2.01
PDLIM2-207ENST00000409417 USP19O94966 1318 aa27.6■■■□□ 2.01
PDLIM2-207ENST00000409417 ANKRD36BQ8N2N9 1353 aa27.6■■■□□ 2.01
PDLIM2-207ENST00000409417 EDC4Q6P2E9 1401 aaKnown RBP27.6■■■□□ 2.01
PDLIM2-207ENST00000409417 MON2Q7Z3U7 1717 aa27.59■■■□□ 2.01
PDLIM2-207ENST00000409417 ABCA3Q99758 1704 aa27.59■■■□□ 2.01
PDLIM2-207ENST00000409417 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.58■■■□□ 2.01
PDLIM2-207ENST00000409417 NRKQ7Z2Y5 1582 aa27.58■■■□□ 2.01
PDLIM2-207ENST00000409417 POTEAQ6S8J7 498 aa27.57■■■□□ 2
PDLIM2-207ENST00000409417 MARF1Q9Y4F3 1742 aaKnown RBP27.56■■■□□ 2
PDLIM2-207ENST00000409417 CRYBG1Q9Y4K1 1723 aa27.56■■■□□ 2
PDLIM2-207ENST00000409417 FAM83GA6ND36 823 aa27.55■■■□□ 2
PDLIM2-207ENST00000409417 C11orf95C9JLR9 678 aaPredicted RBP27.55■■■□□ 2
PDLIM2-207ENST00000409417 POLR3GLQ9BT43 218 aa27.55■■■□□ 2
PDLIM2-207ENST00000409417 USP21Q9UK80 565 aa27.55■■■□□ 2
PDLIM2-207ENST00000409417 PIK3C2AO00443 1686 aa27.54■■■□□ 2
PDLIM2-207ENST00000409417 GCP02774 474 aa27.54■■■□□ 2
PDLIM2-207ENST00000409417 ILDR2Q71H61 639 aa27.52■■■□□ 2
PDLIM2-207ENST00000409417 NME9Q86XW9 330 aa27.52■■■□□ 2
PDLIM2-207ENST00000409417 SLIT2O94813 1529 aa27.52■■■□□ 2
PDLIM2-207ENST00000409417 PRDM11Q9NQV5 511 aa27.51■■■□□ 2
PDLIM2-207ENST00000409417 BCL9LQ86UU0 1499 aa27.51■■□□□ 1.99
PDLIM2-207ENST00000409417 USP31Q70CQ4 1352 aa27.51■■□□□ 1.99
PDLIM2-207ENST00000409417 KIAA0232Q92628 1395 aa27.51■■□□□ 1.99
PDLIM2-207ENST00000409417 ZC3H6P61129 1189 aaKnown RBP27.51■■□□□ 1.99
PDLIM2-207ENST00000409417 QTRT2Q9H974 415 aaKnown RBP27.51■■□□□ 1.99
PDLIM2-207ENST00000409417 PHRF1Q9P1Y6 1649 aaKnown RBP27.5■■□□□ 1.99
PDLIM2-207ENST00000409417 MYOM1P52179 1685 aa27.49■■□□□ 1.99
PDLIM2-207ENST00000409417 CPDO75976 1380 aa27.48■■□□□ 1.99
PDLIM2-207ENST00000409417 UNC5CLQ8IV45 518 aa27.48■■□□□ 1.99
PDLIM2-207ENST00000409417 ZRANB1Q9UGI0 708 aa27.48■■□□□ 1.99
PDLIM2-207ENST00000409417 SLIT3O75094 1523 aa27.48■■□□□ 1.99
PDLIM2-207ENST00000409417 KCNH5Q8NCM2 988 aa27.47■■□□□ 1.99
PDLIM2-207ENST00000409417 TRPC5Q9UL62 973 aaPredicted RBP27.47■■□□□ 1.99
PDLIM2-207ENST00000409417 CARD14Q9BXL6 1004 aa27.46■■□□□ 1.99
PDLIM2-207ENST00000409417 KIF7Q2M1P5 1343 aa27.46■■□□□ 1.99
PDLIM2-207ENST00000409417 RXRBP28702 533 aa27.44■■□□□ 1.98
PDLIM2-207ENST00000409417 BTG4Q9NY30 223 aa27.44■■□□□ 1.98
PDLIM2-207ENST00000409417 COL14A1Q05707 1796 aaKnown RBP27.44■■□□□ 1.98
PDLIM2-207ENST00000409417 CHRNA2Q15822 529 aa27.44■■□□□ 1.98
PDLIM2-207ENST00000409417 ATRNO75882 1429 aa27.43■■□□□ 1.98
PDLIM2-207ENST00000409417 ZEB1P37275 1124 aaPredicted RBP27.43■■□□□ 1.98
PDLIM2-207ENST00000409417 FYB1O15117 783 aa27.42■■□□□ 1.98
PDLIM2-207ENST00000409417 RBM6P78332 1123 aaKnown RBP27.42■■□□□ 1.98
PDLIM2-207ENST00000409417 OVOS2A0A0J9YW53 1432 aa27.41■■□□□ 1.98
PDLIM2-207ENST00000409417 OVOS2Q6IE36 1432 aa27.41■■□□□ 1.98
PDLIM2-207ENST00000409417 NWD2Q9ULI1 1742 aa27.41■■□□□ 1.98
PDLIM2-207ENST00000409417 PLCH1Q4KWH8 1693 aa27.4■■□□□ 1.98
PDLIM2-207ENST00000409417 USP54Q70EL1 1684 aa27.4■■□□□ 1.98
PDLIM2-207ENST00000409417 NSD3Q9BZ95 1437 aa27.4■■□□□ 1.98
PDLIM2-207ENST00000409417 SOX12O15370 315 aa27.4■■□□□ 1.98
PDLIM2-207ENST00000409417 COG3Q96JB2 828 aa27.4■■□□□ 1.98
PDLIM2-207ENST00000409417 PANK3Q9H999 370 aa27.4■■□□□ 1.98
PDLIM2-207ENST00000409417 VPS72Q15906 364 aa27.38■■□□□ 1.97
PDLIM2-207ENST00000409417 ARHGEF25Q86VW2 580 aa27.38■■□□□ 1.97
PDLIM2-207ENST00000409417 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.38■■□□□ 1.97
PDLIM2-207ENST00000409417 NFAT5O94916 1531 aa27.38■■□□□ 1.97
PDLIM2-207ENST00000409417 AATKQ6ZMQ8 1374 aa27.37■■□□□ 1.97
PDLIM2-207ENST00000409417 GJD4Q96KN9 370 aaPredicted RBP27.37■■□□□ 1.97
PDLIM2-207ENST00000409417 GGNBP2Q9H3C7 697 aa27.37■■□□□ 1.97
PDLIM2-207ENST00000409417 CCDC7Q96M83 1385 aa27.36■■□□□ 1.97
PDLIM2-207ENST00000409417 CGNL1Q0VF96 1302 aa27.36■■□□□ 1.97
PDLIM2-207ENST00000409417 WASHC2AQ641Q2 1341 aa27.36■■□□□ 1.97
PDLIM2-207ENST00000409417 ZBTB7CA1YPR0 619 aa27.35■■□□□ 1.97
PDLIM2-207ENST00000409417 CAMTA1Q9Y6Y1 1673 aa27.33■■□□□ 1.96
PDLIM2-207ENST00000409417 CDK12Q9NYV4 1490 aaPredicted RBP27.33■■□□□ 1.96
PDLIM2-207ENST00000409417 CCDC9Q9Y3X0 531 aaKnown RBP27.32■■□□□ 1.96
PDLIM2-207ENST00000409417 NRAPQ86VF7 1730 aa27.31■■□□□ 1.96
PDLIM2-207ENST00000409417 LMO7Q8WWI1 1683 aa27.31■■□□□ 1.96
PDLIM2-207ENST00000409417 EVA1CP58658 441 aa27.31■■□□□ 1.96
PDLIM2-207ENST00000409417 STRN4Q9NRL3 753 aa27.31■■□□□ 1.96
PDLIM2-207ENST00000409417 AXIN2Q9Y2T1 843 aa27.29■■□□□ 1.96
PDLIM2-207ENST00000409417 SPATA31A5Q5VU36 1347 aa27.27■■□□□ 1.96
PDLIM2-207ENST00000409417 SPATA31A7Q8IWB4 1347 aa27.27■■□□□ 1.96
PDLIM2-207ENST00000409417 KNSTRNQ9Y448 316 aa27.27■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms