RNA–Protein interactions for RNA: ENST00000409416.5

COL6A2-204, Transcript of collagen type VI alpha 2 chain, humanhuman

TSL 5 BASIC

Gene COL6A2, Length 3,430 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2-204ENST00000409416 MCM10Q7L590 875 aa16.87■□□□□ 0.29
COL6A2-204ENST00000409416 PHACTR3Q96KR7 559 aa16.87■□□□□ 0.29
COL6A2-204ENST00000409416 POLR3AO14802 1390 aaPredicted RBP16.87■□□□□ 0.29
COL6A2-204ENST00000409416 NGEFQ8N5V2 710 aa16.86■□□□□ 0.29
COL6A2-204ENST00000409416 COG3Q96JB2 828 aa16.86■□□□□ 0.29
COL6A2-204ENST00000409416 SULT6B1Q6IMI4 303 aa16.86■□□□□ 0.29
COL6A2-204ENST00000409416 NCLP19338 710 aaKnown RBP16.86■□□□□ 0.29
COL6A2-204ENST00000409416 AEBP1Q8IUX7 1158 aa16.86■□□□□ 0.29
COL6A2-204ENST00000409416 WDR63Q8IWG1 891 aa16.85■□□□□ 0.29
COL6A2-204ENST00000409416 TSPYL6Q8N831 410 aa16.84■□□□□ 0.29
COL6A2-204ENST00000409416 MVPQ14764 893 aaKnown RBP16.84■□□□□ 0.29
COL6A2-204ENST00000409416 ATAD2Q6PL18 1390 aa16.83■□□□□ 0.29
COL6A2-204ENST00000409416 AMPHP49418 695 aa16.83■□□□□ 0.28
COL6A2-204ENST00000409416 USHBP1Q8N6Y0 703 aa16.83■□□□□ 0.28
COL6A2-204ENST00000409416 ABCA6Q8N139 1617 aa16.83■□□□□ 0.28
COL6A2-204ENST00000409416 TRIM27P14373 513 aa16.83■□□□□ 0.28
COL6A2-204ENST00000409416 CEP152O94986 1710 aa16.83■□□□□ 0.28
COL6A2-204ENST00000409416 USP19O94966 1318 aa16.82■□□□□ 0.28
COL6A2-204ENST00000409416 TET3O43151 1660 aa16.81■□□□□ 0.28
COL6A2-204ENST00000409416 MYOM1P52179 1685 aa16.81■□□□□ 0.28
COL6A2-204ENST00000409416 YEATS2Q9ULM3 1422 aa16.81■□□□□ 0.28
COL6A2-204ENST00000409416 SHROOM2Q13796 1616 aa16.81■□□□□ 0.28
COL6A2-204ENST00000409416 EIF2S2P20042 333 aaKnown RBP16.81■□□□□ 0.28
COL6A2-204ENST00000409416 CCDC9Q9Y3X0 531 aaKnown RBP16.8■□□□□ 0.28
COL6A2-204ENST00000409416 MAP3K4Q9Y6R4 1608 aa16.8■□□□□ 0.28
COL6A2-204ENST00000409416 TBC1D2Q9BYX2 928 aa16.8■□□□□ 0.28
COL6A2-204ENST00000409416 NPATQ14207 1427 aa16.79■□□□□ 0.28
COL6A2-204ENST00000409416 DTNBO60941 627 aa16.79■□□□□ 0.28
COL6A2-204ENST00000409416 VSIG10Q8N0Z9 540 aa16.79■□□□□ 0.28
COL6A2-204ENST00000409416 HSP90AB1P08238 724 aaKnown RBP16.79■□□□□ 0.28
COL6A2-204ENST00000409416 NUDT16Q96DE0 195 aaKnown RBP16.79■□□□□ 0.28
COL6A2-204ENST00000409416 A0A1W2PP64 1363 aa16.78■□□□□ 0.28
COL6A2-204ENST00000409416 TSHZ3Q63HK5 1081 aa16.78■□□□□ 0.28
COL6A2-204ENST00000409416 C22orf23Q9BZE7 217 aa16.78■□□□□ 0.28
COL6A2-204ENST00000409416 FOXO3O43524 673 aa16.78■□□□□ 0.28
COL6A2-204ENST00000409416 NINLQ9Y2I6 1382 aa16.78■□□□□ 0.28
COL6A2-204ENST00000409416 F6X3S4 739 aa16.77■□□□□ 0.28
COL6A2-204ENST00000409416 SMARCA5O60264 1052 aaPredicted RBP16.77■□□□□ 0.28
COL6A2-204ENST00000409416 RTF1Q92541 710 aaKnown RBP16.77■□□□□ 0.28
COL6A2-204ENST00000409416 PODXL2Q9NZ53 605 aa16.77■□□□□ 0.28
COL6A2-204ENST00000409416 HSP90AB2PQ58FF8 381 aa16.77■□□□□ 0.27
COL6A2-204ENST00000409416 KIF1BO60333 1816 aa16.76■□□□□ 0.27
COL6A2-204ENST00000409416 ATF7IPQ6VMQ6 1270 aa16.76■□□□□ 0.27
COL6A2-204ENST00000409416 UHRF1BP1LA0JNW5 1464 aa16.76■□□□□ 0.27
COL6A2-204ENST00000409416 CLASP1Q7Z460 1538 aa16.76■□□□□ 0.27
COL6A2-204ENST00000409416 TBC1D32Q96NH3 1257 aa16.76■□□□□ 0.27
COL6A2-204ENST00000409416 MYOM2P54296 1465 aa16.75■□□□□ 0.27
COL6A2-204ENST00000409416 NLRP6P59044 892 aa16.75■□□□□ 0.27
COL6A2-204ENST00000409416 GLIPR1L2Q4G1C9 344 aa16.75■□□□□ 0.27
COL6A2-204ENST00000409416 DDX19BQ9UMR2 479 aa16.75■□□□□ 0.27
COL6A2-204ENST00000409416 IPO8O15397 1037 aaKnown RBP16.75■□□□□ 0.27
COL6A2-204ENST00000409416 TWISTNBQ3B726 338 aaPredicted RBP16.74■□□□□ 0.27
COL6A2-204ENST00000409416 HSCBQ8IWL3 235 aa16.74■□□□□ 0.27
COL6A2-204ENST00000409416 SLC52A1Q9NWF4 448 aa16.74■□□□□ 0.27
COL6A2-204ENST00000409416 POLKQ9UBT6 870 aa16.73■□□□□ 0.27
COL6A2-204ENST00000409416 ANKRD36BQ8N2N9 1353 aa16.73■□□□□ 0.27
COL6A2-204ENST00000409416 EFCAB6Q5THR3 1501 aa16.72■□□□□ 0.27
COL6A2-204ENST00000409416 TRIM35Q9UPQ4 493 aa16.72■□□□□ 0.27
COL6A2-204ENST00000409416 MROH2AA6NES4 1674 aa16.72■□□□□ 0.27
COL6A2-204ENST00000409416 C8orf58Q8NAV2 365 aa16.72■□□□□ 0.27
COL6A2-204ENST00000409416 ZNF330Q9Y3S2 320 aaPredicted RBP16.71■□□□□ 0.27
COL6A2-204ENST00000409416 ANXA1P04083 346 aa16.71■□□□□ 0.27
COL6A2-204ENST00000409416 C16orf71Q8IYS4 520 aaPredicted RBP16.71■□□□□ 0.27
COL6A2-204ENST00000409416 ZNF518AQ6AHZ1 1483 aa16.71■□□□□ 0.27
COL6A2-204ENST00000409416 PPRC1Q5VV67 1664 aaKnown RBP16.71■□□□□ 0.27
COL6A2-204ENST00000409416 SBNO2Q9Y2G9 1366 aa16.7■□□□□ 0.26
COL6A2-204ENST00000409416 RPGRIP1LQ68CZ1 1315 aa16.7■□□□□ 0.26
COL6A2-204ENST00000409416 RBM42Q9BTD8 480 aaKnown RBP16.7■□□□□ 0.26
COL6A2-204ENST00000409416 CCDC27Q2M243 656 aa16.7■□□□□ 0.26
COL6A2-204ENST00000409416 MAP4K4O95819 1239 aaPredicted RBP16.7■□□□□ 0.26
COL6A2-204ENST00000409416 INO80Q9ULG1 1556 aaPredicted RBP16.69■□□□□ 0.26
COL6A2-204ENST00000409416 TRIM6-TRIM34B2RNG4 842 aa16.69■□□□□ 0.26
COL6A2-204ENST00000409416 SLC4A2P04920 1241 aa16.68■□□□□ 0.26
COL6A2-204ENST00000409416 RILPL2Q969X0 211 aa16.68■□□□□ 0.26
COL6A2-204ENST00000409416 MBIPQ9NS73 344 aa16.68■□□□□ 0.26
COL6A2-204ENST00000409416 PHF23Q9BUL5 403 aaPredicted RBP16.68■□□□□ 0.26
COL6A2-204ENST00000409416 TSPYL4Q9UJ04 414 aa16.68■□□□□ 0.26
COL6A2-204ENST00000409416 EID1Q9Y6B2 187 aa16.67■□□□□ 0.26
COL6A2-204ENST00000409416 DEPDC5O75140 1603 aa16.67■□□□□ 0.26
COL6A2-204ENST00000409416 FKBP5Q13451 457 aaPredicted RBP16.67■□□□□ 0.26
COL6A2-204ENST00000409416 AAMPQ13685 434 aa16.67■□□□□ 0.26
COL6A2-204ENST00000409416 QRICH2Q9H0J4 1663 aa16.66■□□□□ 0.26
COL6A2-204ENST00000409416 OS9Q13438 667 aaPredicted RBP16.66■□□□□ 0.26
COL6A2-204ENST00000409416 ABTB2Q8N961 1025 aa16.66■□□□□ 0.26
COL6A2-204ENST00000409416 WASLO00401 505 aaPredicted RBP16.66■□□□□ 0.26
COL6A2-204ENST00000409416 CCDC61Q9Y6R9 512 aa16.66■□□□□ 0.26
COL6A2-204ENST00000409416 MROH1Q8NDA8 1641 aa16.65■□□□□ 0.26
COL6A2-204ENST00000409416 PLEKHF1Q96S99 279 aa16.65■□□□□ 0.26
COL6A2-204ENST00000409416 EXOC6BQ9Y2D4 811 aa16.65■□□□□ 0.26
COL6A2-204ENST00000409416 KIF16BQ96L93 1317 aa16.65■□□□□ 0.26
COL6A2-204ENST00000409416 GOLGA6L3A6NEY3 463 aa16.65■□□□□ 0.26
COL6A2-204ENST00000409416 PNNQ9H307 717 aaKnown RBP16.65■□□□□ 0.26
COL6A2-204ENST00000409416 A0A0U1RQG5 324 aaPredicted RBP16.64■□□□□ 0.25
COL6A2-204ENST00000409416 TSPOAP1O95153 1857 aa16.64■□□□□ 0.25
COL6A2-204ENST00000409416 MCM4P33991 863 aa16.64■□□□□ 0.25
COL6A2-204ENST00000409416 OTUD7AQ8TE49 926 aaPredicted RBP16.64■□□□□ 0.25
COL6A2-204ENST00000409416 LARP6Q9BRS8 491 aaKnown RBP16.64■□□□□ 0.25
COL6A2-204ENST00000409416 CHMP5Q9NZZ3 219 aa16.64■□□□□ 0.25
COL6A2-204ENST00000409416 VWDEQ8N2E2 1590 aa16.63■□□□□ 0.25
COL6A2-204ENST00000409416 AIMP1Q12904 312 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms