RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 IFT57Q9NWB7 429 aa10.02□□□□□ -0.81
SPTLC3-201ENST00000399002 HMGB2P26583 209 aaKnown RBP10.02□□□□□ -0.81
SPTLC3-201ENST00000399002 FILIP1LQ4L180 1135 aa10.02□□□□□ -0.81
SPTLC3-201ENST00000399002 CCDC43Q96MW1 224 aaKnown RBP10.02□□□□□ -0.81
SPTLC3-201ENST00000399002 NFKBIBQ15653 356 aa10.01□□□□□ -0.81
SPTLC3-201ENST00000399002 ZNF692Q9BU19 519 aaPredicted RBP10.01□□□□□ -0.81
SPTLC3-201ENST00000399002 PRXQ9BXM0 1461 aa10.01□□□□□ -0.81
SPTLC3-201ENST00000399002 SLC4A3P48751 1232 aa10.01□□□□□ -0.81
SPTLC3-201ENST00000399002 KIF6Q6ZMV9 814 aa10.01□□□□□ -0.81
SPTLC3-201ENST00000399002 CIZ1Q9ULV3 898 aaPredicted RBP10.01□□□□□ -0.81
SPTLC3-201ENST00000399002 GNAI2P04899 355 aa10.01□□□□□ -0.81
SPTLC3-201ENST00000399002 TXLNAP40222 546 aa10.01□□□□□ -0.81
SPTLC3-201ENST00000399002 CLASRPQ8N2M8 674 aaKnown RBP10.01□□□□□ -0.81
SPTLC3-201ENST00000399002 JMYQ8N9B5 988 aa10.01□□□□□ -0.81
SPTLC3-201ENST00000399002 RBM33Q96EV2 1170 aaKnown RBP10□□□□□ -0.81
SPTLC3-201ENST00000399002 ATAD2Q6PL18 1390 aa10□□□□□ -0.81
SPTLC3-201ENST00000399002 EPS15P42566 896 aa10□□□□□ -0.81
SPTLC3-201ENST00000399002 IL27Q8NEV9 243 aa10□□□□□ -0.81
SPTLC3-201ENST00000399002 DDX24Q9GZR7 859 aaKnown RBP eCLIP10□□□□□ -0.81
SPTLC3-201ENST00000399002 ZSCAN25Q6NSZ9 544 aa10□□□□□ -0.81
SPTLC3-201ENST00000399002 ATF3P18847 181 aa10□□□□□ -0.81
SPTLC3-201ENST00000399002 FSD1Q9BTV5 496 aa10□□□□□ -0.81
SPTLC3-201ENST00000399002 ANKRD30BQ9BXX2 1392 aa9.99□□□□□ -0.81
SPTLC3-201ENST00000399002 CCDC66A2RUB6 948 aa9.99□□□□□ -0.81
SPTLC3-201ENST00000399002 LNPKQ9C0E8 428 aa9.99□□□□□ -0.81
SPTLC3-201ENST00000399002 MAGEC2Q9UBF1 373 aaPredicted RBP9.99□□□□□ -0.81
SPTLC3-201ENST00000399002 CBFA2T2O43439 604 aa9.99□□□□□ -0.81
SPTLC3-201ENST00000399002 KIF14Q15058 1648 aa9.99□□□□□ -0.81
SPTLC3-201ENST00000399002 KINO60870 393 aaKnown RBP9.99□□□□□ -0.81
SPTLC3-201ENST00000399002 AEBP2Q6ZN18 517 aaPredicted RBP9.99□□□□□ -0.81
SPTLC3-201ENST00000399002 ZSCAN31Q96LW9 406 aaPredicted RBP9.99□□□□□ -0.81
SPTLC3-201ENST00000399002 CC2D2AQ9P2K1 1620 aa9.99□□□□□ -0.81
SPTLC3-201ENST00000399002 TRAK2O60296 914 aa9.99□□□□□ -0.81
SPTLC3-201ENST00000399002 AMER1Q5JTC6 1135 aaPredicted RBP9.99□□□□□ -0.81
SPTLC3-201ENST00000399002 WDR33Q9C0J8 1336 aaKnown RBP9.98□□□□□ -0.81
SPTLC3-201ENST00000399002 PLEKHH1Q9ULM0 1364 aa9.98□□□□□ -0.81
SPTLC3-201ENST00000399002 NCBP3Q53F19 620 aaKnown RBP9.98□□□□□ -0.81
SPTLC3-201ENST00000399002 WASHC4Q2M389 1173 aa9.98□□□□□ -0.81
SPTLC3-201ENST00000399002 LUC7LQ9NQ29 371 aaKnown RBP9.98□□□□□ -0.81
SPTLC3-201ENST00000399002 GNL3LQ9NVN8 582 aaKnown RBP9.98□□□□□ -0.81
SPTLC3-201ENST00000399002 RRP12Q5JTH9 1297 aaKnown RBP9.97□□□□□ -0.81
SPTLC3-201ENST00000399002 PANK1Q8TE04 598 aa9.97□□□□□ -0.81
SPTLC3-201ENST00000399002 ADAMTS8Q9UP79 889 aa9.97□□□□□ -0.81
SPTLC3-201ENST00000399002 CAGE1Q8TC20 777 aa9.97□□□□□ -0.81
SPTLC3-201ENST00000399002 PRG4Q92954 1404 aaPredicted RBP9.97□□□□□ -0.81
SPTLC3-201ENST00000399002 NUTM2FA1L443 756 aa9.97□□□□□ -0.81
SPTLC3-201ENST00000399002 PDZRN3Q9UPQ7 1066 aa9.97□□□□□ -0.81
SPTLC3-201ENST00000399002 TWISTNBQ3B726 338 aaPredicted RBP9.97□□□□□ -0.81
SPTLC3-201ENST00000399002 CCDC158Q5M9N0 1113 aa9.97□□□□□ -0.81
SPTLC3-201ENST00000399002 NAP1L1P55209 391 aaKnown RBP9.96□□□□□ -0.81
SPTLC3-201ENST00000399002 TCP11L2Q8N4U5 519 aa9.96□□□□□ -0.81
SPTLC3-201ENST00000399002 CDKL5O76039 1030 aa9.96□□□□□ -0.81
SPTLC3-201ENST00000399002 CCDC192P0DO97 292 aa9.96□□□□□ -0.81
SPTLC3-201ENST00000399002 ODF2Q5BJF6 829 aa9.96□□□□□ -0.81
SPTLC3-201ENST00000399002 CT47A1Q5JQC4 288 aaPredicted RBP9.96□□□□□ -0.81
SPTLC3-201ENST00000399002 TOPBP1Q92547 1522 aa9.96□□□□□ -0.81
SPTLC3-201ENST00000399002 K7ELQ4 463 aaPredicted RBP9.96□□□□□ -0.81
SPTLC3-201ENST00000399002 CABP2Q9NPB3 220 aa9.96□□□□□ -0.81
SPTLC3-201ENST00000399002 FAM135AQ9P2D6 1515 aa9.96□□□□□ -0.82
SPTLC3-201ENST00000399002 PTPN23Q9H3S7 1636 aa9.96□□□□□ -0.82
SPTLC3-201ENST00000399002 TTC39AQ5SRH9 613 aa9.96□□□□□ -0.82
SPTLC3-201ENST00000399002 IQCEQ6IPM2 695 aa9.96□□□□□ -0.82
SPTLC3-201ENST00000399002 LRRCC1Q9C099 1032 aa9.96□□□□□ -0.82
SPTLC3-201ENST00000399002 CYP46A1Q9Y6A2 500 aa9.96□□□□□ -0.82
SPTLC3-201ENST00000399002 FOXD4L6Q3SYB3 417 aaPredicted RBP9.96□□□□□ -0.82
SPTLC3-201ENST00000399002 FOXD4L3Q6VB84 417 aaPredicted RBP9.96□□□□□ -0.82
SPTLC3-201ENST00000399002 ABCC11Q96J66 1382 aa9.96□□□□□ -0.82
SPTLC3-201ENST00000399002 ERLIN2O94905 339 aa9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 MTHFSP49914 203 aa9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 NEUROD6Q96NK8 337 aa9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 SDF4Q9BRK5 362 aa9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 SLC52A1Q9NWF4 448 aa9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 FAM13BQ9NYF5 915 aa9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 HMOX1P09601 288 aa9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 CALRP27797 417 aaKnown RBP9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 KRT32Q14532 448 aa9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 MVPQ14764 893 aaKnown RBP9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 IQGAP2Q13576 1575 aa9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 PDE4CQ08493 712 aa9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 STIM1Q13586 685 aa9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 CDK5RAP3Q96JB5 506 aa9.95□□□□□ -0.82
SPTLC3-201ENST00000399002 POGZQ7Z3K3 1410 aa9.94□□□□□ -0.82
SPTLC3-201ENST00000399002 GGNBP2Q9H3C7 697 aa9.94□□□□□ -0.82
SPTLC3-201ENST00000399002 NOB1Q9ULX3 412 aaKnown RBP9.94□□□□□ -0.82
SPTLC3-201ENST00000399002 MEX3CQ5U5Q3 659 aaKnown RBP9.94□□□□□ -0.82
SPTLC3-201ENST00000399002 WASF1Q92558 559 aa9.94□□□□□ -0.82
SPTLC3-201ENST00000399002 TRIM5Q9C035 493 aa9.94□□□□□ -0.82
SPTLC3-201ENST00000399002 ZNHIT6Q9NWK9 470 aaKnown RBP9.94□□□□□ -0.82
SPTLC3-201ENST00000399002 NACAP1Q9BZK3 213 aa9.94□□□□□ -0.82
SPTLC3-201ENST00000399002 PDILTQ8N807 584 aa9.94□□□□□ -0.82
SPTLC3-201ENST00000399002 RTEL1-TNFRSF6BF6WH68 1400 aa9.93□□□□□ -0.82
SPTLC3-201ENST00000399002 HSP90AB2PQ58FF8 381 aa9.93□□□□□ -0.82
SPTLC3-201ENST00000399002 NOL7Q9UMY1 257 aaKnown RBP9.93□□□□□ -0.82
SPTLC3-201ENST00000399002 SPG7Q9UQ90 795 aa9.93□□□□□ -0.82
SPTLC3-201ENST00000399002 OFD1O75665 1012 aa9.93□□□□□ -0.82
SPTLC3-201ENST00000399002 SMC2O95347 1197 aa9.93□□□□□ -0.82
SPTLC3-201ENST00000399002 DHX29Q7Z478 1369 aaKnown RBP9.93□□□□□ -0.82
SPTLC3-201ENST00000399002 SURF6O75683 361 aaKnown RBP9.93□□□□□ -0.82
SPTLC3-201ENST00000399002 TATP17735 454 aaPredicted RBP9.93□□□□□ -0.82
SPTLC3-201ENST00000399002 EXOSC9Q06265 439 aaKnown RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 168.6 ms